Wall clock time and date at job start Tue Mar 31 2020 19:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99827 * 2 1 4 4 C 1.53004 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.35040 * 124.88512 * 125.00401 * 5 4 3 7 7 C 1.35364 * 107.23119 * 180.02562 * 6 5 4 8 8 C 1.41501 * 105.50091 * 359.97438 * 7 6 5 9 9 C 1.47715 * 126.51683 * 179.97438 * 8 7 6 10 10 O 1.21565 * 120.00218 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99842 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.53000 * 109.47023 * 274.99565 * 12 11 9 15 15 C 1.53002 * 109.47233 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 12 17 17 C 1.53005 * 109.47452 * 300.00239 * 16 15 14 18 18 C 1.52997 * 109.47007 * 154.99772 * 12 11 9 19 19 H 1.09002 * 109.47153 * 60.00089 * 18 12 11 20 20 N 1.46500 * 109.47473 * 299.99846 * 18 12 11 21 21 C 1.36942 * 120.00130 * 154.99556 * 20 18 12 22 22 H 1.08000 * 119.99641 * 0.02562 * 21 20 18 23 23 C 1.38804 * 119.99697 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00654 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99901 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46815 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46998 * 120.00219 * 25 23 21 28 28 H 1.48492 * 109.47251 * 240.00552 * 25 23 21 29 29 N 1.28471 * 124.88611 * 305.32982 * 5 4 3 30 30 H 1.08999 * 109.47080 * 299.99675 * 1 2 3 31 31 H 1.09001 * 109.47232 * 60.00290 * 1 2 3 32 32 H 1.09000 * 109.46666 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46982 * 60.00423 * 3 2 1 34 34 H 1.09004 * 109.47355 * 300.00362 * 3 2 1 35 35 H 1.08998 * 109.46842 * 60.00239 * 4 3 2 36 36 H 1.08995 * 109.47080 * 300.00193 * 4 3 2 37 37 H 1.08000 * 126.38196 * 0.05130 * 6 5 4 38 38 H 1.07996 * 127.25186 * 179.97438 * 7 6 5 39 39 H 0.97004 * 119.99983 * 359.97438 * 11 9 8 40 40 H 1.08992 * 109.47399 * 300.00063 * 14 12 11 41 41 H 1.09004 * 109.46724 * 60.00549 * 14 12 11 42 42 H 1.08993 * 109.47662 * 180.02562 * 15 14 12 43 43 H 1.09002 * 109.47075 * 300.00932 * 15 14 12 44 44 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 45 45 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 46 46 H 1.09000 * 109.47360 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.46935 * 300.00125 * 17 16 15 48 48 H 0.97000 * 119.99491 * 335.00093 * 20 18 12 49 49 H 0.96993 * 120.00293 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0262 2.9697 0.9073 7 6 5.3350 4.2443 0.5720 8 6 4.5722 4.5262 -0.5859 9 6 4.5565 5.7959 -1.3406 10 8 5.2476 6.7276 -0.9771 11 7 3.7751 5.9218 -2.4315 12 6 3.7591 7.1813 -3.1796 13 1 4.7546 7.6252 -3.1651 14 6 2.7614 8.1451 -2.5343 15 6 2.7451 9.4608 -3.3152 16 6 2.3293 9.1896 -4.7624 17 6 3.3270 8.2257 -5.4078 18 6 3.3429 6.9097 -4.6266 19 1 2.3475 6.4658 -4.6412 20 7 4.2983 5.9868 -5.2446 21 6 3.9098 5.2035 -6.2986 22 1 2.8993 5.2665 -6.6745 23 6 4.8152 4.3295 -6.8844 24 7 6.0468 4.2531 -6.4265 25 14 4.2856 3.2616 -8.3227 26 1 2.8618 3.5350 -8.6443 27 1 5.1281 3.5712 -9.5057 28 1 4.4459 1.8301 -7.9618 29 7 3.8730 3.4427 -0.8591 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8909 36 1 3.8575 0.6437 0.8890 37 1 5.4220 2.4134 1.7441 38 1 6.0195 4.9065 1.0811 39 1 3.2233 5.1785 -2.7213 40 1 1.7660 7.7013 -2.5489 41 1 3.0580 8.3387 -1.5034 42 1 2.0347 10.1476 -2.8554 43 1 3.7407 9.9044 -3.3004 44 1 1.3338 8.7459 -4.7774 45 1 2.3181 10.1268 -5.3190 46 1 3.0310 8.0329 -6.4390 47 1 4.3225 8.6694 -5.3929 48 1 5.2059 5.9305 -4.9070 49 1 6.6793 3.6421 -6.8356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085269311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:39 Heat of formation + Delta-G solvation = -24.217114 kcal Electronic energy + Delta-G solvation = -29670.834534 eV Core-core repulsion = 25633.737851 eV Total energy + Delta-G solvation = -4037.096683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.65460 -40.92285 -39.15532 -38.94659 -35.82399 -35.18083 -34.89062 -33.00654 -31.81505 -30.95841 -30.21288 -29.25128 -27.34124 -25.76773 -25.38775 -23.75666 -22.79257 -22.41346 -22.32337 -21.20642 -20.53231 -19.27304 -18.78841 -17.97323 -17.43120 -17.29310 -17.03674 -16.75893 -16.59623 -15.99035 -15.77947 -15.55719 -15.26196 -15.18563 -14.73968 -14.70725 -14.61442 -14.33908 -14.14299 -13.93560 -13.61108 -13.49791 -13.02346 -12.92950 -12.86392 -12.63854 -12.34565 -12.22682 -12.17972 -12.02897 -12.02196 -11.86009 -11.67464 -11.43480 -11.27780 -11.05888 -10.84531 -10.78737 -10.31995 -10.10134 -9.88532 -9.00093 -7.91898 -5.20927 0.53801 1.19722 1.34164 1.45518 1.46163 1.55929 2.20886 2.43761 2.55537 2.78666 3.39780 3.42372 3.67592 3.76046 3.80940 3.83457 3.98109 4.09967 4.16608 4.21697 4.27085 4.31530 4.43727 4.44061 4.47703 4.49949 4.59153 4.60564 4.65777 4.69774 4.75196 4.78058 4.82444 4.96209 5.00878 5.15719 5.25119 5.29863 5.30867 5.34464 5.46819 5.52219 5.55859 5.67811 5.84075 6.00853 6.27713 6.49534 6.90433 7.21303 7.34059 8.08021 8.32421 9.31650 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007284 B = 0.003916 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3843.002396 B = 7147.933891 C = 9036.654685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.056 3.944 4 C 0.120 3.880 5 N -0.279 5.279 6 C 0.009 3.991 7 C -0.202 4.202 8 C -0.041 4.041 9 C 0.598 3.402 10 O -0.575 6.575 11 N -0.692 5.692 12 C 0.146 3.854 13 H 0.057 0.943 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.127 4.127 18 C 0.173 3.827 19 H 0.054 0.946 20 N -0.732 5.732 21 C -0.229 4.229 22 H 0.079 0.921 23 C -0.075 4.075 24 N -0.970 5.970 25 Si 0.968 3.032 26 H -0.263 1.263 27 H -0.297 1.297 28 H -0.298 1.298 29 N -0.279 5.279 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.153 0.847 37 H 0.235 0.765 38 H 0.168 0.832 39 H 0.407 0.593 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.042 0.958 48 H 0.368 0.632 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 -3.235 18.165 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.022 4.022 4 C 0.001 3.999 5 N -0.068 5.068 6 C -0.133 4.133 7 C -0.230 4.230 8 C -0.200 4.200 9 C 0.383 3.617 10 O -0.454 6.454 11 N -0.340 5.340 12 C 0.041 3.959 13 H 0.075 0.925 14 C -0.154 4.154 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.168 4.168 18 C 0.064 3.936 19 H 0.072 0.928 20 N -0.371 5.371 21 C -0.361 4.361 22 H 0.097 0.903 23 C -0.267 4.267 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.187 1.187 27 H -0.225 1.225 28 H -0.225 1.225 29 N -0.116 5.116 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.171 0.829 37 H 0.251 0.749 38 H 0.185 0.815 39 H 0.242 0.758 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.199 0.801 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.005 -3.390 17.505 21.495 hybrid contribution 0.855 -0.496 -0.699 1.211 sum -11.150 -3.886 16.805 20.539 Atomic orbital electron populations 1.22976 0.78709 1.04318 1.00908 1.87747 1.21984 1.26710 1.95674 1.22538 0.92483 0.85482 1.01710 1.21964 0.92777 0.77251 1.07926 1.45647 1.31017 1.11631 1.18553 1.23545 0.96108 0.95436 0.98232 1.22022 1.05171 0.97767 0.98022 1.21963 1.03523 0.93903 1.00626 1.17238 0.78925 0.85353 0.80147 1.90706 1.44088 1.40858 1.69741 1.45796 1.44532 1.16849 1.26848 1.21270 0.99702 0.83911 0.90994 0.92511 1.21815 0.98818 0.95672 0.99053 1.21477 1.02093 0.96006 0.95131 1.21521 0.98633 0.99051 0.95546 1.22089 0.99188 0.96028 0.99454 1.20678 0.93096 0.90485 0.89333 0.92765 1.42591 1.11159 1.45783 1.37564 1.19622 0.96233 1.13575 1.06690 0.90297 1.25499 0.96013 1.02359 1.02837 1.69858 1.05136 1.41890 1.45274 0.85143 0.77850 0.78094 0.79115 1.18709 1.22456 1.22519 1.73499 1.23588 0.98020 1.16473 0.92630 0.93891 0.87638 0.91611 0.93327 0.88436 0.82934 0.74915 0.81488 0.75792 0.90583 0.92312 0.89242 0.92559 0.91067 0.90569 0.93047 0.93867 0.80129 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.16 10.70 -148.98 -1.59 -8.75 16 3 C 0.06 0.97 6.04 71.98 0.43 1.41 16 4 C 0.12 1.94 6.77 86.38 0.58 2.52 16 5 N -0.28 -6.43 3.41 -347.96 -1.19 -7.61 16 6 C 0.01 0.17 11.40 83.54 0.95 1.13 16 7 C -0.20 -5.53 10.81 22.41 0.24 -5.29 16 8 C -0.04 -1.42 7.13 42.46 0.30 -1.12 16 9 C 0.60 23.86 7.79 86.75 0.68 24.54 16 10 O -0.58 -25.50 16.59 -3.92 -0.07 -25.56 16 11 N -0.69 -26.50 4.91 -445.53 -2.19 -28.69 16 12 C 0.15 5.41 1.98 44.99 0.09 5.50 16 13 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 14 C -0.11 -3.32 5.49 30.60 0.17 -3.16 16 15 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 16 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 17 C -0.13 -4.48 5.50 30.61 0.17 -4.31 16 18 C 0.17 6.87 2.30 45.01 0.10 6.97 16 19 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 20 N -0.73 -37.43 4.95 -322.87 -1.60 -39.03 16 21 C -0.23 -12.68 9.93 84.03 0.83 -11.85 16 22 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 23 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 24 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 25 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 26 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 N -0.28 -8.89 11.35 -48.17 -0.55 -9.44 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.07 8.08 -2.38 -0.02 1.05 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.15 1.20 8.04 -2.39 -0.02 1.18 16 37 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.17 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.41 15.67 8.33 -92.71 -0.77 14.90 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.37 21.19 7.80 -92.71 -0.72 20.47 16 49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -76.90 405.34 1.22 -75.67 By element: Atomic # 1 Polarization: 47.12 SS G_CDS: -0.54 Total: 46.58 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 6.63 Total: 8.90 kcal Atomic # 7 Polarization: -140.45 SS G_CDS: -5.24 Total: -145.69 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.66 Total: -34.31 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -76.90 1.22 -75.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085269311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.457 kcal (2) G-P(sol) polarization free energy of solvation -76.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds