Wall clock time and date at job start Tue Mar 31 2020 19:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46936 * 2 1 4 4 C 1.50697 * 109.47286 * 119.99507 * 2 1 3 5 5 N 1.31078 * 126.66337 * 300.17792 * 4 2 1 6 6 N 1.28842 * 107.99180 * 180.23975 * 5 4 2 7 7 N 1.28737 * 109.39431 * 359.74805 * 6 5 4 8 8 N 1.29022 * 108.81260 * 0.02562 * 7 6 5 9 9 C 1.46497 * 126.43484 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47160 * 90.02708 * 9 8 7 11 11 O 1.21289 * 119.99544 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00257 * 179.97438 * 10 9 8 13 13 C 1.46510 * 119.99925 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46680 * 35.00162 * 13 12 10 15 15 C 1.52997 * 109.47071 * 274.99865 * 13 12 10 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46626 * 60.00378 * 16 15 13 18 18 C 1.52997 * 109.47127 * 299.99539 * 17 16 15 19 19 C 1.52996 * 109.46858 * 155.00046 * 13 12 10 20 20 H 1.08996 * 109.47452 * 59.99781 * 19 13 12 21 21 N 1.46507 * 109.47258 * 299.99700 * 19 13 12 22 22 C 1.36933 * 120.00173 * 154.99816 * 21 19 13 23 23 H 1.08000 * 119.99754 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00419 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00242 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99772 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47130 * 90.00256 * 26 24 22 28 28 H 1.48504 * 109.47331 * 209.99790 * 26 24 22 29 29 H 1.48500 * 109.47241 * 330.00358 * 26 24 22 30 30 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47473 * 300.00137 * 1 2 3 32 32 H 1.08999 * 109.47079 * 60.00353 * 1 2 3 33 33 H 1.08999 * 109.47473 * 239.99863 * 2 1 3 34 34 H 1.08997 * 109.46739 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46948 * 299.99727 * 3 2 1 36 36 H 1.08999 * 109.47152 * 59.99666 * 3 2 1 37 37 H 1.08993 * 109.47748 * 330.02485 * 9 8 7 38 38 H 1.09000 * 109.47263 * 210.01975 * 9 8 7 39 39 H 0.96994 * 120.00306 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47153 * 60.00215 * 15 13 12 41 41 H 1.08993 * 109.47194 * 300.00503 * 15 13 12 42 42 H 1.08993 * 109.47839 * 300.00447 * 16 15 13 43 43 H 1.09000 * 109.47160 * 180.02562 * 16 15 13 44 44 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 45 45 H 1.09001 * 109.46998 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 47 47 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 48 48 H 0.96998 * 120.00008 * 335.00854 * 21 19 13 49 49 H 0.97006 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4766 6 7 2.4015 -1.2266 3.2351 7 7 3.0153 -2.0914 2.5052 8 7 2.8095 -1.8087 1.2633 9 6 3.3289 -2.5421 0.1064 10 6 2.3500 -3.6182 -0.2870 11 8 1.3201 -3.7589 0.3380 12 7 2.6190 -4.4242 -1.3331 13 6 1.6675 -5.4707 -1.7152 14 1 0.6507 -5.1175 -1.5435 15 6 1.9215 -6.7229 -0.8734 16 6 0.9275 -7.8155 -1.2720 17 6 1.1067 -8.1521 -2.7538 18 6 0.8526 -6.9000 -3.5955 19 6 1.8472 -5.8071 -3.1968 20 1 2.8640 -6.1602 -3.3686 21 7 1.6040 -4.6081 -4.0029 22 6 2.1729 -4.4896 -5.2427 23 1 2.8006 -5.2802 -5.6266 24 6 1.9429 -3.3534 -6.0062 25 7 2.4894 -3.2397 -7.1982 26 14 0.8578 -1.9857 -5.3420 27 1 1.6919 -1.0114 -4.5934 28 1 0.1840 -1.2956 -6.4712 29 1 -0.1652 -2.5627 -4.4331 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 4.2851 -2.9973 0.3641 38 1 3.4671 -1.8542 -0.7278 39 1 3.4424 -4.3114 -1.8331 40 1 1.7935 -6.4832 0.1822 41 1 2.9383 -7.0759 -1.0451 42 1 -0.0892 -7.4623 -1.1000 43 1 1.1081 -8.7075 -0.6720 44 1 2.1234 -8.5054 -2.9257 45 1 0.3988 -8.9309 -3.0376 46 1 0.9799 -7.1398 -4.6511 47 1 -0.1640 -6.5467 -3.4234 48 1 1.0400 -3.8982 -3.6582 49 1 2.3289 -2.4455 -7.7316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085356990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:12 Heat of formation + Delta-G solvation = 74.663967 kcal Electronic energy + Delta-G solvation = -30663.615798 eV Core-core repulsion = 26663.099671 eV Total energy + Delta-G solvation = -4000.516127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.26748 -40.24473 -38.28974 -36.33753 -35.46244 -34.36101 -34.19388 -31.61379 -31.50991 -30.26051 -29.00521 -27.91531 -27.43876 -24.53932 -23.78574 -23.59971 -22.37213 -21.17298 -20.97491 -20.52987 -19.85045 -18.28528 -17.92443 -17.50978 -16.36752 -16.17401 -15.86668 -15.48514 -15.09327 -14.76114 -14.50875 -14.18621 -13.84187 -13.67283 -13.49644 -13.48362 -13.34144 -12.98673 -12.78165 -12.50589 -12.42384 -12.40560 -12.22254 -11.88282 -11.57948 -11.53982 -11.43123 -11.41252 -11.17405 -11.10387 -11.04123 -11.01653 -10.78207 -10.51302 -10.28905 -10.18114 -10.02679 -9.84715 -9.76178 -9.13880 -9.03940 -7.47250 -5.94300 -3.31465 1.09496 1.67940 2.19993 2.27065 2.96555 3.18216 3.25574 3.31468 3.70852 3.97165 4.28459 4.32270 4.41519 4.49495 4.72469 4.73848 4.83257 4.88206 4.99447 5.07400 5.25331 5.31297 5.31793 5.41465 5.42566 5.50697 5.51520 5.58412 5.59322 5.61652 5.67469 5.70086 5.76009 5.90958 5.92829 5.98194 6.04169 6.06015 6.16174 6.23161 6.27659 6.30559 6.50512 6.66524 6.80368 7.32787 7.79851 7.95467 8.24014 8.55064 9.01233 9.73672 9.92738 11.23512 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.004592 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.730923 B = 6095.880499 C = 8321.643883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.015 4.015 3 C -0.143 4.143 4 C 0.206 3.794 5 N -0.302 5.302 6 N -0.076 5.076 7 N -0.088 5.088 8 N -0.292 5.292 9 C 0.089 3.911 10 C 0.500 3.500 11 O -0.527 6.527 12 N -0.699 5.699 13 C 0.139 3.861 14 H 0.086 0.914 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.133 4.133 19 C 0.178 3.822 20 H 0.063 0.937 21 N -0.747 5.747 22 C -0.247 4.247 23 H 0.092 0.908 24 C 0.010 3.990 25 N -0.929 5.929 26 Si 0.879 3.121 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.409 0.591 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.361 0.639 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 0.303 11.953 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.201 4.201 4 C -0.072 4.072 5 N -0.150 5.150 6 N -0.070 5.070 7 N -0.073 5.073 8 N -0.092 5.092 9 C -0.037 4.037 10 C 0.282 3.718 11 O -0.403 6.403 12 N -0.350 5.350 13 C 0.034 3.966 14 H 0.104 0.896 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.174 4.174 19 C 0.068 3.932 20 H 0.080 0.920 21 N -0.389 5.389 22 C -0.377 4.377 23 H 0.109 0.891 24 C -0.187 4.187 25 N -0.577 5.577 26 Si 0.709 3.291 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.194 0.806 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.103 0.015 13.602 13.646 hybrid contribution -0.357 0.905 -1.017 1.407 sum 0.746 0.921 12.585 12.640 Atomic orbital electron populations 1.21826 0.91700 1.03321 1.03372 1.19839 0.98000 0.96177 0.89654 1.21847 1.01230 0.93348 1.03693 1.26083 0.94415 0.88740 0.97932 1.74940 1.19845 1.21908 0.98322 1.78571 1.06886 0.99064 1.22492 1.78850 1.20388 1.20816 0.87254 1.47838 1.34585 1.20009 1.06812 1.22056 0.99297 0.95991 0.86402 1.20200 0.87286 0.82703 0.81562 1.90802 1.26100 1.70739 1.52628 1.45857 1.24762 1.33583 1.30794 1.21466 0.93315 0.86301 0.95532 0.89640 1.21861 0.99997 0.94845 0.99598 1.21481 0.99328 0.97790 0.96657 1.21585 1.01530 0.98193 0.94515 1.22191 1.00165 0.94710 1.00335 1.20461 0.97992 0.88057 0.86644 0.91955 1.42797 1.59730 1.18198 1.18179 1.19029 1.24037 1.03519 0.91104 0.89070 1.24649 0.99840 0.98007 0.96158 1.69690 1.47899 1.29264 1.10799 0.86650 0.81072 0.83134 0.78254 1.21080 1.21644 1.20365 0.91867 0.91080 0.90788 0.88929 0.92341 0.90654 0.90984 0.83900 0.84106 0.75536 0.91844 0.91573 0.92007 0.92084 0.92072 0.92386 0.90928 0.92538 0.80633 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.17 37.15 0.34 -1.24 16 2 C -0.01 -0.16 3.26 -91.77 -0.30 -0.46 16 3 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 4 C 0.21 2.76 6.64 -155.43 -1.03 1.72 16 5 N -0.30 -4.70 12.36 32.70 0.40 -4.30 16 6 N -0.08 -1.28 13.43 60.35 0.81 -0.47 16 7 N -0.09 -1.35 13.29 60.35 0.80 -0.55 16 8 N -0.29 -3.82 2.83 -59.45 -0.17 -3.98 16 9 C 0.09 0.84 6.57 -5.19 -0.03 0.81 16 10 C 0.50 6.38 7.86 -10.99 -0.09 6.29 16 11 O -0.53 -8.92 16.09 5.55 0.09 -8.83 16 12 N -0.70 -8.42 4.91 -53.80 -0.26 -8.69 16 13 C 0.14 1.90 1.98 -67.93 -0.13 1.77 16 14 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 15 C -0.12 -1.48 5.49 -26.73 -0.15 -1.63 16 16 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 17 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 18 C -0.13 -2.01 5.50 -26.71 -0.15 -2.16 16 19 C 0.18 2.82 2.30 -67.90 -0.16 2.66 16 20 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 21 N -0.75 -14.94 4.76 -53.40 -0.25 -15.20 16 22 C -0.25 -6.09 10.41 -15.06 -0.16 -6.25 16 23 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 24 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 25 N -0.93 -26.91 13.97 55.49 0.78 -26.13 16 26 Si 0.88 20.03 27.74 -169.99 -4.71 15.31 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.91 6.84 -51.93 -0.36 0.55 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.14 0.94 7.12 -51.93 -0.37 0.57 16 39 H 0.41 4.22 8.60 -40.82 -0.35 3.87 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.36 7.40 5.66 -40.82 -0.23 7.17 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -33.11 398.20 -6.50 -39.60 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.05 Total: 9.48 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.92 Total: -2.25 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 2.11 Total: -59.32 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.71 Total: 15.31 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.11 -6.50 -39.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085356990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.268 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds