Wall clock time and date at job start Tue Mar 31 2020 19:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46936 * 2 1 4 4 C 1.50697 * 109.47286 * 119.99507 * 2 1 3 5 5 N 1.31078 * 126.66337 * 300.17792 * 4 2 1 6 6 N 1.28842 * 107.99180 * 180.23975 * 5 4 2 7 7 N 1.28737 * 109.39431 * 359.74805 * 6 5 4 8 8 N 1.29022 * 108.81260 * 0.02562 * 7 6 5 9 9 C 1.46497 * 126.43484 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47160 * 90.02708 * 9 8 7 11 11 O 1.21289 * 119.99544 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00257 * 179.97438 * 10 9 8 13 13 C 1.46510 * 119.99925 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46680 * 35.00162 * 13 12 10 15 15 C 1.52997 * 109.47071 * 274.99865 * 13 12 10 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46626 * 60.00378 * 16 15 13 18 18 C 1.52997 * 109.47127 * 299.99539 * 17 16 15 19 19 C 1.52996 * 109.46858 * 155.00046 * 13 12 10 20 20 H 1.08996 * 109.47452 * 59.99781 * 19 13 12 21 21 N 1.46507 * 109.47258 * 299.99700 * 19 13 12 22 22 C 1.36933 * 120.00173 * 154.99816 * 21 19 13 23 23 H 1.08000 * 119.99754 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00419 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00242 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99772 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47130 * 90.00256 * 26 24 22 28 28 H 1.48504 * 109.47331 * 209.99790 * 26 24 22 29 29 H 1.48500 * 109.47241 * 330.00358 * 26 24 22 30 30 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47473 * 300.00137 * 1 2 3 32 32 H 1.08999 * 109.47079 * 60.00353 * 1 2 3 33 33 H 1.08999 * 109.47473 * 239.99863 * 2 1 3 34 34 H 1.08997 * 109.46739 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46948 * 299.99727 * 3 2 1 36 36 H 1.08999 * 109.47152 * 59.99666 * 3 2 1 37 37 H 1.08993 * 109.47748 * 330.02485 * 9 8 7 38 38 H 1.09000 * 109.47263 * 210.01975 * 9 8 7 39 39 H 0.96994 * 120.00306 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47153 * 60.00215 * 15 13 12 41 41 H 1.08993 * 109.47194 * 300.00503 * 15 13 12 42 42 H 1.08993 * 109.47839 * 300.00447 * 16 15 13 43 43 H 1.09000 * 109.47160 * 180.02562 * 16 15 13 44 44 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 45 45 H 1.09001 * 109.46998 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 47 47 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 48 48 H 0.96998 * 120.00008 * 335.00854 * 21 19 13 49 49 H 0.97006 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4766 6 7 2.4015 -1.2266 3.2351 7 7 3.0153 -2.0914 2.5052 8 7 2.8095 -1.8087 1.2633 9 6 3.3289 -2.5421 0.1064 10 6 2.3500 -3.6182 -0.2870 11 8 1.3201 -3.7589 0.3380 12 7 2.6190 -4.4242 -1.3331 13 6 1.6675 -5.4707 -1.7152 14 1 0.6507 -5.1175 -1.5435 15 6 1.9215 -6.7229 -0.8734 16 6 0.9275 -7.8155 -1.2720 17 6 1.1067 -8.1521 -2.7538 18 6 0.8526 -6.9000 -3.5955 19 6 1.8472 -5.8071 -3.1968 20 1 2.8640 -6.1602 -3.3686 21 7 1.6040 -4.6081 -4.0029 22 6 2.1729 -4.4896 -5.2427 23 1 2.8006 -5.2802 -5.6266 24 6 1.9429 -3.3534 -6.0062 25 7 2.4894 -3.2397 -7.1982 26 14 0.8578 -1.9857 -5.3420 27 1 1.6919 -1.0114 -4.5934 28 1 0.1840 -1.2956 -6.4712 29 1 -0.1652 -2.5627 -4.4331 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 4.2851 -2.9973 0.3641 38 1 3.4671 -1.8542 -0.7278 39 1 3.4424 -4.3114 -1.8331 40 1 1.7935 -6.4832 0.1822 41 1 2.9383 -7.0759 -1.0451 42 1 -0.0892 -7.4623 -1.1000 43 1 1.1081 -8.7075 -0.6720 44 1 2.1234 -8.5054 -2.9257 45 1 0.3988 -8.9309 -3.0376 46 1 0.9799 -7.1398 -4.6511 47 1 -0.1640 -6.5467 -3.4234 48 1 1.0400 -3.8982 -3.6582 49 1 2.3289 -2.4455 -7.7316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085356990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:11 Heat of formation + Delta-G solvation = 51.533016 kcal Electronic energy + Delta-G solvation = -30664.618832 eV Core-core repulsion = 26663.099671 eV Total energy + Delta-G solvation = -4001.519160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.33313 -41.32951 -39.45389 -37.22080 -36.48037 -35.91928 -35.33379 -33.31736 -32.61848 -31.29232 -30.25164 -29.09450 -28.19356 -25.53296 -25.35679 -24.77088 -23.44396 -22.50274 -21.95283 -21.53924 -20.97686 -19.80417 -18.90743 -18.81361 -17.45777 -17.25566 -16.84462 -16.71662 -16.36948 -15.94761 -15.63280 -15.21782 -15.08602 -14.83282 -14.69724 -14.51828 -14.44132 -14.27730 -13.95345 -13.73063 -13.62807 -13.24491 -13.16434 -13.07679 -12.87193 -12.75079 -12.53261 -12.38304 -12.37937 -12.34083 -12.19324 -12.09812 -11.96353 -11.81669 -11.73093 -11.51749 -11.29774 -11.14499 -11.01766 -10.83149 -10.15054 -9.28942 -7.96934 -5.30487 0.05260 0.77465 1.08861 1.29837 1.37965 1.44576 1.50303 1.99692 2.51669 2.80854 3.10022 3.33321 3.36629 3.47885 3.54070 3.73732 3.85332 3.93777 3.98723 4.06719 4.14045 4.16760 4.22114 4.31900 4.38572 4.43694 4.55108 4.59307 4.64344 4.70106 4.75098 4.82571 4.88267 4.90401 4.96791 5.06013 5.07620 5.19057 5.19918 5.25358 5.27128 5.27371 5.40521 5.47680 5.59426 5.83471 6.25757 6.34804 6.99177 7.11482 7.44605 7.86329 8.04911 9.24107 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.004592 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.730923 B = 6095.880499 C = 8321.643883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.324 5.324 6 N -0.105 5.105 7 N -0.098 5.098 8 N -0.289 5.289 9 C 0.084 3.916 10 C 0.502 3.498 11 O -0.572 6.572 12 N -0.693 5.693 13 C 0.148 3.852 14 H 0.063 0.937 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.131 4.131 19 C 0.178 3.822 20 H 0.067 0.933 21 N -0.746 5.746 22 C -0.219 4.219 23 H 0.063 0.937 24 C -0.055 4.055 25 N -0.982 5.982 26 Si 0.940 3.060 27 H -0.260 1.260 28 H -0.307 1.307 29 H -0.267 1.267 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.420 0.580 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.361 0.639 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 0.341 12.773 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 C -0.197 4.197 4 C -0.069 4.069 5 N -0.173 5.173 6 N -0.099 5.099 7 N -0.084 5.084 8 N -0.090 5.090 9 C -0.040 4.040 10 C 0.286 3.714 11 O -0.451 6.451 12 N -0.344 5.344 13 C 0.043 3.957 14 H 0.081 0.919 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.172 4.172 19 C 0.070 3.930 20 H 0.085 0.915 21 N -0.388 5.388 22 C -0.350 4.350 23 H 0.081 0.919 24 C -0.247 4.247 25 N -0.632 5.632 26 Si 0.768 3.232 27 H -0.185 1.185 28 H -0.235 1.235 29 H -0.193 1.193 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.197 0.803 38 H 0.194 0.806 39 H 0.257 0.743 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.194 0.806 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.760 0.016 14.466 14.572 hybrid contribution -0.558 0.749 -1.316 1.614 sum 1.202 0.765 13.149 13.226 Atomic orbital electron populations 1.21819 0.92099 1.01971 1.04183 1.20073 0.97635 0.97297 0.88846 1.21844 1.01718 0.91908 1.04218 1.26577 0.93609 0.88631 0.98083 1.74865 1.20516 1.22451 0.99420 1.78536 1.07945 0.99877 1.23493 1.78756 1.20595 1.20770 0.88299 1.48048 1.34177 1.19921 1.06830 1.22487 0.99289 0.95789 0.86419 1.20650 0.87063 0.82839 0.80816 1.90798 1.28219 1.72025 1.54060 1.45775 1.24717 1.33103 1.30755 1.21221 0.92727 0.87649 0.94101 0.91863 1.21803 1.01167 0.93981 0.98555 1.21476 0.98738 0.98424 0.96322 1.21514 1.02527 0.96626 0.94254 1.22095 0.99368 0.96124 0.99575 1.20627 0.98297 0.86685 0.87440 0.91524 1.42771 1.59309 1.19704 1.17062 1.18953 1.21951 1.01870 0.92193 0.91885 1.25327 1.02040 1.00836 0.96516 1.69866 1.50611 1.30060 1.12695 0.85647 0.79633 0.80577 0.77317 1.18465 1.23500 1.19282 0.94194 0.91498 0.88816 0.87434 0.91552 0.88860 0.91740 0.80320 0.80567 0.74259 0.92576 0.89870 0.92772 0.89875 0.91028 0.91142 0.93333 0.93426 0.80614 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.17 71.98 0.66 -2.23 16 2 C -0.02 -0.32 3.26 -11.54 -0.04 -0.36 16 3 C -0.14 -2.04 9.18 71.98 0.66 -1.38 16 4 C 0.21 5.26 6.64 138.13 0.92 6.18 16 5 N -0.32 -9.94 12.36 -50.45 -0.62 -10.57 16 6 N -0.10 -3.49 13.43 37.01 0.50 -2.99 16 7 N -0.10 -2.93 13.29 37.02 0.49 -2.44 16 8 N -0.29 -6.99 2.83 -341.99 -0.97 -7.95 16 9 C 0.08 1.32 6.57 85.63 0.56 1.89 16 10 C 0.50 11.64 7.86 87.66 0.69 12.33 16 11 O -0.57 -18.76 16.09 -3.06 -0.05 -18.81 16 12 N -0.69 -14.94 4.91 -442.52 -2.17 -17.11 16 13 C 0.15 3.81 1.98 44.99 0.09 3.90 16 14 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 15 C -0.12 -2.48 5.49 30.59 0.17 -2.32 16 16 C -0.11 -2.23 5.92 30.60 0.18 -2.05 16 17 C -0.11 -2.39 5.92 30.60 0.18 -2.21 16 18 C -0.13 -3.83 5.50 30.61 0.17 -3.66 16 19 C 0.18 5.36 2.30 45.00 0.10 5.46 16 20 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 21 N -0.75 -28.94 4.76 -322.87 -1.54 -30.47 16 22 C -0.22 -10.73 10.41 84.03 0.87 -9.86 16 23 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 24 C -0.06 -2.92 5.50 84.86 0.47 -2.46 16 25 N -0.98 -57.81 13.97 21.65 0.30 -57.51 16 26 Si 0.94 40.63 27.74 68.60 1.90 42.53 16 27 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 28 H -0.31 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.27 -10.93 6.52 99.48 0.65 -10.28 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 1.71 6.84 -2.39 -0.02 1.69 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.18 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.18 1.54 7.12 -2.39 -0.02 1.52 16 39 H 0.42 7.34 8.60 -92.71 -0.80 6.54 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.36 14.14 5.66 -92.71 -0.52 13.61 16 49 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -74.47 398.20 3.11 -71.35 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.42 Total: 30.73 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.69 Total: 3.24 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -4.01 Total: -129.04 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.90 Total: 42.53 kcal Total: -74.47 3.11 -71.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085356990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.887 kcal (2) G-P(sol) polarization free energy of solvation -74.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds