Wall clock time and date at job start Tue Mar 31 2020 19:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99964 * 2 1 4 4 C 1.52996 * 109.46970 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47139 * 180.02562 * 4 3 2 6 6 C 1.34251 * 125.75180 * 125.00203 * 5 4 3 7 7 C 1.38054 * 107.41642 * 180.02562 * 6 5 4 8 8 C 1.47425 * 126.41317 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00314 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99744 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00132 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47152 * 34.99769 * 11 10 8 13 13 C 1.52999 * 109.47381 * 274.99545 * 11 10 8 14 14 C 1.52997 * 109.47592 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47165 * 60.00300 * 14 13 11 16 16 C 1.53002 * 109.46972 * 300.00293 * 15 14 13 17 17 C 1.52997 * 109.47415 * 59.99860 * 16 15 14 18 18 H 1.09000 * 109.47140 * 59.99976 * 17 16 15 19 19 N 1.46500 * 109.47204 * 180.02562 * 17 16 15 20 20 C 1.36931 * 120.00263 * 275.00118 * 19 17 16 21 21 H 1.08001 * 119.99686 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00367 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99821 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47524 * 59.99906 * 24 22 20 26 26 H 1.48507 * 109.46754 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47057 * 299.99476 * 24 22 20 28 28 C 1.41294 * 107.16688 * 0.22716 * 7 6 5 29 29 N 1.30454 * 108.02225 * 359.61506 * 28 7 6 30 30 H 1.08997 * 109.46614 * 299.99545 * 1 2 3 31 31 H 1.08993 * 109.47105 * 59.99818 * 1 2 3 32 32 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46742 * 60.00321 * 3 2 1 34 34 H 1.09001 * 109.47110 * 300.00040 * 3 2 1 35 35 H 1.09002 * 109.46973 * 60.00062 * 4 3 2 36 36 H 1.09001 * 109.47513 * 300.00486 * 4 3 2 37 37 H 1.07995 * 126.29809 * 0.04034 * 6 5 4 38 38 H 0.97006 * 119.99905 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47160 * 300.00219 * 13 11 10 40 40 H 1.09002 * 109.46719 * 59.99939 * 13 11 10 41 41 H 1.09000 * 109.47140 * 300.00346 * 14 13 11 42 42 H 1.09001 * 109.47375 * 180.02562 * 14 13 11 43 43 H 1.08992 * 109.47534 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.47134 * 59.99508 * 15 14 13 45 45 H 1.09000 * 109.46986 * 299.99742 * 16 15 14 46 46 H 1.09001 * 109.47601 * 180.02562 * 16 15 14 47 47 H 0.97001 * 119.99882 * 94.99976 * 19 17 16 48 48 H 0.96997 * 120.00234 * 180.02562 * 23 22 20 49 49 H 1.08002 * 125.98453 * 179.73895 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0210 2.9851 0.8942 7 6 5.3262 4.2839 0.5393 8 6 6.2609 5.1852 1.2374 9 8 6.8493 4.8010 2.2298 10 7 6.4625 6.4355 0.7762 11 6 7.3916 7.3310 1.4694 12 1 8.2262 6.7526 1.8658 13 6 6.6639 8.0302 2.6194 14 6 7.6345 8.9651 3.3439 15 6 8.1619 10.0132 2.3620 16 6 8.8896 9.3140 1.2119 17 6 7.9190 8.3792 0.4875 18 1 7.0848 8.9580 0.0910 19 7 8.6161 7.7093 -0.6133 20 6 8.7248 8.3261 -1.8310 21 1 8.2964 9.3062 -1.9801 22 6 9.3848 7.6911 -2.8742 23 7 9.9065 6.4965 -2.6927 24 14 9.5325 8.5322 -4.5355 25 1 10.2626 9.8156 -4.3775 26 1 10.2770 7.6519 -5.4716 27 1 8.1760 8.7979 -5.0782 28 6 4.5704 4.5893 -0.6148 29 7 3.8688 3.5352 -0.9285 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8891 36 1 3.8568 0.6438 0.8908 37 1 5.4240 2.4409 1.7355 38 1 5.9928 6.7421 -0.0153 39 1 5.8294 8.6086 2.2230 40 1 6.2886 7.2836 3.3192 41 1 8.4688 8.3863 3.7403 42 1 7.1162 9.4629 4.1634 43 1 8.8537 10.6789 2.8779 44 1 7.3276 10.5919 1.9655 45 1 9.7239 8.7353 1.6083 46 1 9.2658 10.0607 0.5125 47 1 9.0006 6.8289 -0.4795 48 1 10.3680 6.0529 -3.4215 49 1 4.5747 5.5300 -1.1455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085408003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:44 Heat of formation + Delta-G solvation = -5.499196 kcal Electronic energy + Delta-G solvation = -29155.556075 eV Core-core repulsion = 25119.271062 eV Total energy + Delta-G solvation = -4036.285014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.37714 -39.36381 -38.37509 -37.53692 -34.16370 -33.97782 -33.53520 -31.10552 -30.49796 -29.89337 -28.80261 -27.57319 -26.62588 -23.92105 -23.66394 -23.10824 -21.52217 -21.03721 -20.69643 -19.84663 -19.32090 -17.91494 -17.16190 -16.77912 -16.63142 -15.85117 -15.76078 -15.53385 -14.97542 -14.85878 -14.45319 -14.15910 -14.09820 -13.72925 -13.67991 -13.56001 -13.27241 -12.94544 -12.73906 -12.58846 -12.41618 -12.09420 -12.01506 -12.00776 -11.77574 -11.06159 -10.99924 -10.88617 -10.78068 -10.70421 -10.50689 -10.29079 -10.17927 -10.16256 -9.70890 -9.64079 -9.59579 -9.43571 -8.88401 -8.74272 -8.38401 -6.95149 -5.74693 -3.04259 1.56227 2.06460 2.28565 3.36817 3.43602 3.48551 3.49792 3.67874 3.83813 4.27601 4.47940 4.58231 4.73269 4.75354 4.84606 4.90300 4.91973 5.12059 5.17646 5.19094 5.22422 5.26316 5.27754 5.37342 5.50355 5.56229 5.58043 5.76060 5.81233 5.89944 5.95801 6.01331 6.03224 6.16303 6.38221 6.41554 6.50226 6.54424 6.56566 6.58220 6.63368 6.74719 6.91431 6.98272 7.16112 7.50630 7.69728 8.07389 8.42435 8.74112 9.54104 10.11283 10.46485 11.47093 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.002909 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.884488 B = 9622.876477 C =11766.501657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.136 3.864 5 N -0.366 5.366 6 C 0.126 3.874 7 C -0.281 4.281 8 C 0.595 3.405 9 O -0.561 6.561 10 N -0.702 5.702 11 C 0.143 3.857 12 H 0.084 0.916 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.173 3.827 18 H 0.050 0.950 19 N -0.721 5.721 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.091 3.909 29 N -0.300 5.300 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.187 0.813 38 H 0.401 0.599 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 -6.733 9.890 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.014 3.986 5 N -0.146 5.146 6 C -0.024 4.024 7 C -0.295 4.295 8 C 0.383 3.617 9 O -0.441 6.441 10 N -0.350 5.350 11 C 0.038 3.962 12 H 0.102 0.898 13 C -0.163 4.163 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.174 4.174 17 C 0.062 3.938 18 H 0.068 0.932 19 N -0.362 5.362 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.576 5.576 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.097 4.097 29 N -0.120 5.120 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.204 0.796 38 H 0.236 0.764 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -17.017 -7.738 9.573 21.003 hybrid contribution 0.525 0.874 -0.864 1.337 sum -16.493 -6.864 8.709 19.874 Atomic orbital electron populations 1.22777 0.80007 1.03060 1.00383 1.87780 1.20531 1.27003 1.95611 1.22661 0.92594 0.85259 1.02110 1.21442 0.92557 0.78935 1.05653 1.48261 1.33388 1.11971 1.21006 1.22936 0.90910 0.94357 0.94231 1.20358 1.09747 0.96338 1.03089 1.17144 0.80406 0.81081 0.83103 1.90727 1.50534 1.75936 1.26925 1.45647 1.45501 1.12713 1.31177 1.21268 0.91655 0.91001 0.92277 0.89798 1.21873 0.98440 0.98435 0.97521 1.21471 0.98928 0.97129 0.97652 1.21578 0.99807 0.97523 0.96834 1.22221 0.99256 0.99445 0.96477 1.20464 0.93841 0.91502 0.87959 0.93206 1.42406 1.65985 1.20192 1.07585 1.19142 1.29893 1.00080 0.88024 0.91296 1.24727 1.01060 0.96741 0.98157 1.69660 1.41797 1.14112 1.32065 0.86325 0.77524 0.78373 0.84258 1.21375 1.21835 1.21316 1.24165 0.93101 0.97807 0.94605 1.77150 1.25016 0.96696 1.13112 0.93835 0.93686 0.89209 0.92608 0.91398 0.88380 0.87420 0.79559 0.76420 0.92089 0.91923 0.91984 0.92487 0.92766 0.92415 0.92468 0.91664 0.78088 0.93504 0.79100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.40 10.70 -35.23 -0.38 -3.78 16 3 C 0.05 0.43 6.11 37.16 0.23 0.66 16 4 C 0.14 1.17 6.86 -4.04 -0.03 1.14 16 5 N -0.37 -4.34 3.65 -60.81 -0.22 -4.56 16 6 C 0.13 1.59 11.25 -16.56 -0.19 1.41 16 7 C -0.28 -4.20 6.13 -105.06 -0.64 -4.84 16 8 C 0.60 10.31 7.78 -12.52 -0.10 10.22 16 9 O -0.56 -11.20 16.56 5.27 0.09 -11.11 16 10 N -0.70 -11.62 4.90 -54.88 -0.27 -11.89 16 11 C 0.14 2.44 1.97 -67.93 -0.13 2.31 16 12 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 13 C -0.12 -1.76 5.49 -26.73 -0.15 -1.91 16 14 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 15 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 16 C -0.13 -2.30 5.50 -26.73 -0.15 -2.45 16 17 C 0.17 3.24 2.29 -67.93 -0.16 3.08 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 N -0.72 -17.17 4.95 -53.42 -0.26 -17.43 16 20 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 24 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.09 1.27 11.50 -16.98 -0.20 1.08 16 29 N -0.30 -4.19 12.33 30.86 0.38 -3.80 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.68 8.06 -51.93 -0.42 0.26 16 37 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.40 6.24 7.56 -40.82 -0.31 5.94 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.39 10.20 7.80 -40.82 -0.32 9.88 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.19 2.29 7.50 -52.49 -0.39 1.90 16 LS Contribution 404.97 15.07 6.10 6.10 Total: -1.00 -33.14 404.97 -7.96 -41.09 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -8.14 Total: 13.66 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.96 Total: 1.70 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.35 Total: -64.68 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.29 Total: -14.89 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.14 -7.96 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085408003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.595 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds