Wall clock time and date at job start Tue Mar 31 2020 19:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99964 * 2 1 4 4 C 1.52996 * 109.46970 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47139 * 180.02562 * 4 3 2 6 6 C 1.34251 * 125.75180 * 125.00203 * 5 4 3 7 7 C 1.38054 * 107.41642 * 180.02562 * 6 5 4 8 8 C 1.47425 * 126.41317 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00314 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99744 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00132 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47152 * 34.99769 * 11 10 8 13 13 C 1.52999 * 109.47381 * 274.99545 * 11 10 8 14 14 C 1.52997 * 109.47592 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47165 * 60.00300 * 14 13 11 16 16 C 1.53002 * 109.46972 * 300.00293 * 15 14 13 17 17 C 1.52997 * 109.47415 * 59.99860 * 16 15 14 18 18 H 1.09000 * 109.47140 * 59.99976 * 17 16 15 19 19 N 1.46500 * 109.47204 * 180.02562 * 17 16 15 20 20 C 1.36931 * 120.00263 * 275.00118 * 19 17 16 21 21 H 1.08001 * 119.99686 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00367 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99821 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47524 * 59.99906 * 24 22 20 26 26 H 1.48507 * 109.46754 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47057 * 299.99476 * 24 22 20 28 28 C 1.41294 * 107.16688 * 0.22716 * 7 6 5 29 29 N 1.30454 * 108.02225 * 359.61506 * 28 7 6 30 30 H 1.08997 * 109.46614 * 299.99545 * 1 2 3 31 31 H 1.08993 * 109.47105 * 59.99818 * 1 2 3 32 32 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46742 * 60.00321 * 3 2 1 34 34 H 1.09001 * 109.47110 * 300.00040 * 3 2 1 35 35 H 1.09002 * 109.46973 * 60.00062 * 4 3 2 36 36 H 1.09001 * 109.47513 * 300.00486 * 4 3 2 37 37 H 1.07995 * 126.29809 * 0.04034 * 6 5 4 38 38 H 0.97006 * 119.99905 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47160 * 300.00219 * 13 11 10 40 40 H 1.09002 * 109.46719 * 59.99939 * 13 11 10 41 41 H 1.09000 * 109.47140 * 300.00346 * 14 13 11 42 42 H 1.09001 * 109.47375 * 180.02562 * 14 13 11 43 43 H 1.08992 * 109.47534 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.47134 * 59.99508 * 15 14 13 45 45 H 1.09000 * 109.46986 * 299.99742 * 16 15 14 46 46 H 1.09001 * 109.47601 * 180.02562 * 16 15 14 47 47 H 0.97001 * 119.99882 * 94.99976 * 19 17 16 48 48 H 0.96997 * 120.00234 * 180.02562 * 23 22 20 49 49 H 1.08002 * 125.98453 * 179.73895 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0210 2.9851 0.8942 7 6 5.3262 4.2839 0.5393 8 6 6.2609 5.1852 1.2374 9 8 6.8493 4.8010 2.2298 10 7 6.4625 6.4355 0.7762 11 6 7.3916 7.3310 1.4694 12 1 8.2262 6.7526 1.8658 13 6 6.6639 8.0302 2.6194 14 6 7.6345 8.9651 3.3439 15 6 8.1619 10.0132 2.3620 16 6 8.8896 9.3140 1.2119 17 6 7.9190 8.3792 0.4875 18 1 7.0848 8.9580 0.0910 19 7 8.6161 7.7093 -0.6133 20 6 8.7248 8.3261 -1.8310 21 1 8.2964 9.3062 -1.9801 22 6 9.3848 7.6911 -2.8742 23 7 9.9065 6.4965 -2.6927 24 14 9.5325 8.5322 -4.5355 25 1 10.2626 9.8156 -4.3775 26 1 10.2770 7.6519 -5.4716 27 1 8.1760 8.7979 -5.0782 28 6 4.5704 4.5893 -0.6148 29 7 3.8688 3.5352 -0.9285 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8891 36 1 3.8568 0.6438 0.8908 37 1 5.4240 2.4409 1.7355 38 1 5.9928 6.7421 -0.0153 39 1 5.8294 8.6086 2.2230 40 1 6.2886 7.2836 3.3192 41 1 8.4688 8.3863 3.7403 42 1 7.1162 9.4629 4.1634 43 1 8.8537 10.6789 2.8779 44 1 7.3276 10.5919 1.9655 45 1 9.7239 8.7353 1.6083 46 1 9.2658 10.0607 0.5125 47 1 9.0006 6.8289 -0.4795 48 1 10.3680 6.0529 -3.4215 49 1 4.5747 5.5300 -1.1455 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085408003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:43 Heat of formation + Delta-G solvation = -28.508884 kcal Electronic energy + Delta-G solvation = -29156.553850 eV Core-core repulsion = 25119.271062 eV Total energy + Delta-G solvation = -4037.282788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.42103 -40.71328 -39.07591 -38.85474 -35.77047 -35.19249 -34.74020 -32.94980 -31.58097 -30.91786 -30.00620 -29.05800 -27.23726 -25.61719 -24.73410 -24.21157 -22.82385 -22.40439 -21.68310 -21.15612 -20.57263 -19.23165 -18.80035 -17.69329 -17.36007 -17.15700 -16.76330 -16.55024 -16.38051 -15.95313 -15.69966 -15.52251 -15.32992 -15.04384 -14.90792 -14.68372 -14.56981 -14.27593 -14.00512 -13.80517 -13.53044 -13.45238 -13.05963 -12.88623 -12.75327 -12.72610 -12.35937 -12.23963 -12.12534 -12.03484 -12.02643 -11.94343 -11.58315 -11.38792 -11.06206 -10.94736 -10.79170 -10.69575 -10.63514 -9.99225 -9.60624 -8.94968 -7.87471 -5.15795 0.51337 1.14396 1.19365 1.49834 1.51799 1.57563 2.39240 2.56197 2.59790 2.72655 3.45340 3.50122 3.74617 3.79168 3.84658 3.85110 3.90753 4.12534 4.17980 4.20403 4.29856 4.32201 4.38350 4.44917 4.48798 4.49305 4.54632 4.61812 4.63810 4.67238 4.74874 4.77722 4.82109 5.00753 5.07794 5.24019 5.29291 5.34632 5.35403 5.37588 5.52574 5.57221 5.63341 5.76955 5.77653 6.01807 6.32061 6.45639 6.74971 7.38974 7.40183 8.14023 8.37926 9.35392 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.002909 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.884488 B = 9622.876477 C =11766.501657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.059 3.941 4 C 0.129 3.871 5 N -0.357 5.357 6 C 0.138 3.862 7 C -0.310 4.310 8 C 0.593 3.407 9 O -0.594 6.594 10 N -0.701 5.701 11 C 0.151 3.849 12 H 0.053 0.947 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.172 3.828 18 H 0.059 0.941 19 N -0.731 5.731 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.075 4.075 23 N -0.970 5.970 24 Si 0.966 3.034 25 H -0.281 1.281 26 H -0.304 1.304 27 H -0.275 1.275 28 C 0.088 3.912 29 N -0.318 5.318 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.211 0.789 38 H 0.406 0.594 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.049 0.951 47 H 0.368 0.632 48 H 0.246 0.754 49 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.442 -5.922 10.774 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.019 4.019 4 C 0.009 3.991 5 N -0.137 5.137 6 C -0.014 4.014 7 C -0.325 4.325 8 C 0.382 3.618 9 O -0.477 6.477 10 N -0.349 5.349 11 C 0.045 3.955 12 H 0.071 0.929 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.148 4.148 16 C -0.169 4.169 17 C 0.063 3.937 18 H 0.077 0.923 19 N -0.370 5.370 20 C -0.360 4.360 21 H 0.097 0.903 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.796 3.204 25 H -0.207 1.207 26 H -0.231 1.231 27 H -0.202 1.202 28 C -0.099 4.099 29 N -0.138 5.138 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.154 0.846 37 H 0.228 0.772 38 H 0.241 0.759 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.200 0.800 48 H 0.055 0.945 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -18.892 -6.879 10.466 22.666 hybrid contribution 1.020 0.568 -1.079 1.590 sum -17.872 -6.311 9.387 21.151 Atomic orbital electron populations 1.22974 0.78673 1.04301 1.00938 1.87755 1.22029 1.26892 1.95680 1.22521 0.92386 0.85301 1.01671 1.21754 0.92733 0.77404 1.07228 1.48493 1.32708 1.12482 1.19987 1.23301 0.90018 0.93702 0.94339 1.20292 1.10785 0.97226 1.04170 1.17467 0.80302 0.81250 0.82762 1.90696 1.52047 1.76509 1.28460 1.45642 1.45171 1.12757 1.31286 1.21136 0.91352 0.90280 0.92718 0.92917 1.21804 0.98861 0.98474 0.96173 1.21476 0.98579 0.96675 0.98102 1.21512 1.00218 0.97588 0.95437 1.22091 0.98693 0.98619 0.97482 1.20679 0.93871 0.91985 0.87137 0.92309 1.42575 1.66318 1.19689 1.08378 1.19534 1.27783 0.99969 0.88678 0.90267 1.25468 1.02077 0.97532 1.01629 1.69836 1.43774 1.15890 1.32561 0.85314 0.77661 0.77166 0.80220 1.20734 1.23076 1.20151 1.24354 0.92803 0.98397 0.94374 1.77112 1.25448 0.97173 1.14036 0.93000 0.93426 0.87702 0.92284 0.92620 0.88097 0.84611 0.77193 0.75898 0.90350 0.92394 0.92835 0.89512 0.90948 0.90949 0.94125 0.93230 0.80048 0.94475 0.78067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.44 10.70 -148.98 -1.59 -8.03 16 3 C 0.06 0.92 6.11 71.98 0.44 1.36 16 4 C 0.13 2.00 6.86 86.38 0.59 2.59 16 5 N -0.36 -8.05 3.65 -346.30 -1.26 -9.31 16 6 C 0.14 3.36 11.25 84.28 0.95 4.31 16 7 C -0.31 -9.24 6.13 -20.15 -0.12 -9.37 16 8 C 0.59 20.86 7.78 86.66 0.67 21.53 16 9 O -0.59 -24.18 16.56 -4.04 -0.07 -24.25 16 10 N -0.70 -23.41 4.90 -445.81 -2.19 -25.60 16 11 C 0.15 5.14 1.97 44.99 0.09 5.23 16 12 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 13 C -0.11 -3.06 5.49 30.59 0.17 -2.89 16 14 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 15 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 16 C -0.13 -4.35 5.50 30.59 0.17 -4.18 16 17 C 0.17 6.39 2.29 44.99 0.10 6.49 16 18 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 19 N -0.73 -35.39 4.95 -322.94 -1.60 -36.99 16 20 C -0.23 -12.06 9.93 84.04 0.83 -11.22 16 21 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 23 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 24 Si 0.97 45.69 29.55 68.60 2.03 47.71 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 C 0.09 2.45 11.50 85.65 0.99 3.44 16 29 N -0.32 -8.69 12.33 -56.27 -0.69 -9.38 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.14 1.36 8.06 -2.39 -0.02 1.34 16 37 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.41 12.67 7.56 -92.70 -0.70 11.97 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 48 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 49 H 0.20 4.84 7.50 -2.91 -0.02 4.82 16 Total: -1.00 -72.60 404.97 1.39 -71.21 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -0.47 Total: 43.73 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.96 Total: 10.14 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -5.46 Total: -140.51 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.66 Total: -32.28 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.60 1.39 -71.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085408003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.696 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds