Wall clock time and date at job start Tue Mar 31 2020 20:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46830 * 240.00312 * 2 1 3 5 5 N 1.46497 * 109.47444 * 120.00371 * 2 1 3 6 6 N 1.28724 * 125.31576 * 0.02562 * 5 2 1 7 7 N 1.28983 * 108.98458 * 179.97438 * 6 5 2 8 8 C 1.34185 * 107.25725 * 359.97438 * 7 6 5 9 9 C 1.47999 * 126.70237 * 180.02562 * 8 7 6 10 10 O 1.21537 * 120.00000 * 179.97438 * 9 8 7 11 11 N 1.34770 * 119.99893 * 359.97438 * 9 8 7 12 12 C 1.46509 * 120.00221 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47294 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.43213 * 307.54170 * 13 12 11 15 15 C 1.54889 * 110.48785 * 70.22657 * 13 12 11 16 16 C 1.54879 * 102.74848 * 156.62062 * 15 13 12 17 17 C 1.54263 * 104.19719 * 322.05435 * 16 15 13 18 18 H 1.09008 * 110.07578 * 142.91825 * 17 16 15 19 19 N 1.46496 * 110.03676 * 264.32439 * 17 16 15 20 20 C 1.36936 * 120.00650 * 272.16945 * 19 17 16 21 21 H 1.08002 * 119.99203 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00306 * 180.02562 * 20 19 17 23 23 N 1.31614 * 120.00101 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99791 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47398 * 59.99888 * 24 22 20 26 26 H 1.48502 * 109.46892 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47039 * 299.99525 * 24 22 20 28 28 C 1.53878 * 106.59819 * 23.61404 * 17 16 15 29 29 N 1.28864 * 125.32194 * 179.97438 * 5 2 1 30 30 H 1.09002 * 109.47015 * 299.99869 * 1 2 3 31 31 H 1.08999 * 109.47300 * 59.99597 * 1 2 3 32 32 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47062 * 180.02562 * 3 2 1 34 34 H 1.08991 * 109.47515 * 300.00076 * 3 2 1 35 35 H 1.09001 * 109.47074 * 60.00723 * 3 2 1 36 36 H 1.08998 * 109.47529 * 299.99843 * 4 2 1 37 37 H 1.09005 * 109.47320 * 60.00360 * 4 2 1 38 38 H 1.09003 * 109.47140 * 179.97438 * 4 2 1 39 39 H 0.96998 * 120.00324 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.46960 * 300.00127 * 12 11 9 41 41 H 1.09003 * 109.46672 * 59.99823 * 12 11 9 42 42 H 1.09002 * 110.75599 * 274.93581 * 15 13 12 43 43 H 1.09003 * 110.75542 * 38.30258 * 15 13 12 44 44 H 1.09009 * 110.48454 * 203.38052 * 16 15 13 45 45 H 1.09000 * 110.60132 * 80.79195 * 16 15 13 46 46 H 0.97007 * 119.99561 * 92.16350 * 19 17 16 47 47 H 0.97002 * 120.00353 * 180.02562 * 23 22 20 48 48 H 1.08994 * 110.02930 * 240.71092 * 28 17 16 49 49 H 1.09005 * 110.03088 * 119.27818 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2762 -1.2170 2.1066 7 7 2.0308 -1.7404 3.0123 8 6 3.3030 -1.5272 2.6425 9 6 4.5190 -1.9500 3.3725 10 8 5.6182 -1.6913 2.9232 11 7 4.4074 -2.6217 4.5355 12 6 5.6111 -3.0407 5.2580 13 6 5.2080 -3.7781 6.5364 14 1 4.5084 -3.1773 7.1177 15 6 4.5897 -5.1566 6.1952 16 6 4.8138 -5.9637 7.4979 17 6 6.2040 -5.5103 7.9894 18 1 6.2137 -5.4467 9.0776 19 7 7.2294 -6.4516 7.5330 20 6 7.5345 -7.5517 8.2892 21 1 7.0192 -7.7251 9.2225 22 6 8.5065 -8.4434 7.8569 23 7 9.1347 -8.2318 6.7199 24 14 8.9220 -9.9444 8.8883 25 1 7.7090 -10.7860 9.0488 26 1 9.9840 -10.7315 8.2115 27 1 9.4029 -9.5094 10.2241 28 6 6.4546 -4.1205 7.3781 29 7 3.2581 -0.8670 1.5006 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 3.5301 -2.8279 4.8943 40 1 6.2015 -3.7043 4.6261 41 1 6.2036 -2.1631 5.5166 42 1 3.5257 -5.0599 5.9789 43 1 5.1144 -5.6190 5.3591 44 1 4.8135 -7.0335 7.2887 45 1 4.0499 -5.7201 8.2363 46 1 7.6924 -6.2957 6.6949 47 1 9.8137 -8.8551 6.4176 48 1 7.3391 -4.1466 6.7418 49 1 6.5849 -3.3825 8.1696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086701295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:30 Heat of formation + Delta-G solvation = 89.836494 kcal Electronic energy + Delta-G solvation = -28559.445757 eV Core-core repulsion = 24559.587560 eV Total energy + Delta-G solvation = -3999.858197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.74328 -39.83074 -38.22615 -37.97994 -35.04879 -33.84965 -33.32650 -32.73471 -30.67363 -29.05637 -28.27579 -28.21324 -27.43171 -25.74988 -24.83180 -23.75734 -23.09227 -21.33412 -20.88757 -19.94054 -19.17323 -18.17815 -17.72904 -17.14891 -17.04437 -16.27661 -15.53451 -15.14249 -14.90484 -14.82368 -14.61260 -14.39421 -14.21512 -13.67177 -13.56584 -13.40340 -13.18916 -13.13903 -13.02810 -12.61417 -12.55130 -12.50678 -12.24507 -12.14441 -11.80727 -11.38845 -11.37346 -11.31827 -11.15936 -10.84261 -10.70828 -10.68297 -10.55971 -10.47999 -10.41752 -10.21109 -10.15502 -9.89168 -9.58106 -9.18474 -8.83610 -6.89212 -5.71978 -3.00120 0.72572 1.19972 1.29926 2.63515 2.93498 3.46797 3.51274 3.52276 3.54132 3.77892 3.84925 3.96204 4.28083 4.62853 4.74796 4.77377 4.78654 4.86411 4.94327 4.97008 4.98538 4.99547 4.99823 5.13832 5.24275 5.35759 5.43130 5.53872 5.57628 5.60472 5.74590 5.74888 5.76706 5.95176 6.02676 6.09577 6.16008 6.23249 6.32771 6.39439 6.51891 6.70426 6.80573 6.95978 7.14724 7.22887 7.74839 7.81959 7.96913 8.47364 9.57801 10.17789 10.51667 11.50566 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.001809 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.172796 B =15477.356404 C =15637.033348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.125 5.125 6 N -0.055 5.055 7 N -0.257 5.257 8 C 0.128 3.872 9 C 0.613 3.387 10 O -0.508 6.508 11 N -0.700 5.700 12 C 0.127 3.873 13 C -0.104 4.104 14 H 0.077 0.923 15 C -0.114 4.114 16 C -0.146 4.146 17 C 0.174 3.826 18 H 0.048 0.952 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.121 4.121 29 N -0.245 5.245 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.410 0.590 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.073 0.927 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 21.108 -14.850 32.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.220 4.220 5 N -0.040 5.040 6 N -0.048 5.048 7 N -0.131 5.131 8 C -0.156 4.156 9 C 0.392 3.608 10 O -0.380 6.380 11 N -0.352 5.352 12 C 0.004 3.996 13 C -0.123 4.123 14 H 0.096 0.904 15 C -0.152 4.152 16 C -0.186 4.186 17 C 0.064 3.936 18 H 0.066 0.934 19 N -0.362 5.362 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.160 4.160 29 N -0.098 5.098 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.246 0.754 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.663 21.225 -15.171 32.669 hybrid contribution 0.381 -1.016 0.472 1.184 sum -19.282 20.209 -14.699 31.563 Atomic orbital electron populations 1.22116 0.89719 1.04815 1.04492 1.21546 0.96661 0.92884 0.79345 1.22265 1.03590 0.91798 1.04239 1.22273 1.03621 1.01182 0.94888 1.50767 1.00926 1.34153 1.18135 1.78880 1.21583 1.08778 0.95544 1.76137 1.00089 1.17479 1.19436 1.25374 0.94587 1.02226 0.93435 1.16106 0.84595 0.79104 0.80974 1.90873 1.25252 1.54947 1.66916 1.45762 1.11752 1.55984 1.21727 1.21706 0.85681 0.99375 0.92817 1.22255 0.98890 0.96656 0.94470 0.90426 1.22519 0.99068 0.94361 0.99248 1.23114 0.99047 1.00786 0.95700 1.20805 0.88467 0.87871 0.96488 0.93355 1.42537 1.42832 1.25281 1.25512 1.19215 1.15995 0.99764 1.02016 0.91284 1.24735 0.99448 0.99330 0.97527 1.69648 1.28590 1.38281 1.21611 0.86290 0.77626 0.83003 0.79391 1.21366 1.21776 1.21332 1.22467 0.96747 0.98114 0.98631 1.74998 1.02677 1.17028 1.15100 0.90467 0.89010 0.90428 0.90161 0.88879 0.91263 0.91197 0.88872 0.90138 0.75404 0.90279 0.90930 0.92744 0.91243 0.90973 0.93275 0.78258 0.93514 0.90811 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 7.90 37.16 0.29 -0.25 16 2 C 0.18 0.97 1.30 -131.82 -0.17 0.80 16 3 C -0.16 -0.67 8.66 37.16 0.32 -0.35 16 4 C -0.16 -0.72 8.66 37.16 0.32 -0.40 16 5 N -0.12 -1.23 3.72 0.52 0.00 -1.23 16 6 N -0.06 -0.62 12.21 60.35 0.74 0.12 16 7 N -0.26 -3.23 12.26 32.10 0.39 -2.84 16 8 C 0.13 1.71 8.14 -156.24 -1.27 0.44 16 9 C 0.61 8.81 7.84 -12.26 -0.10 8.72 16 10 O -0.51 -8.89 17.10 5.33 0.09 -8.80 16 11 N -0.70 -8.61 5.44 -61.20 -0.33 -8.94 16 12 C 0.13 1.65 4.96 -4.04 -0.02 1.63 16 13 C -0.10 -1.35 2.89 -88.96 -0.26 -1.61 16 14 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.11 -1.67 6.19 -24.74 -0.15 -1.83 16 16 C -0.15 -2.52 6.54 -25.08 -0.16 -2.68 16 17 C 0.17 3.37 3.55 -66.81 -0.24 3.13 16 18 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 19 N -0.72 -17.85 5.08 -52.34 -0.27 -18.11 16 20 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 24 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C -0.12 -1.90 6.14 -25.61 -0.16 -2.05 16 29 N -0.24 -3.07 11.85 32.11 0.38 -2.69 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.41 4.36 8.19 -40.82 -0.33 4.02 16 40 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.14 7.97 -51.93 -0.41 0.73 16 44 H 0.07 1.45 8.04 -51.92 -0.42 1.03 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.38 10.14 7.52 -40.82 -0.31 9.83 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -33.95 405.06 -7.18 -41.13 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.15 Total: 7.06 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.84 Total: -1.71 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 1.64 Total: -61.32 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.95 -7.18 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086701295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.966 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds