Wall clock time and date at job start Tue Mar 31 2020 20:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46830 * 240.00312 * 2 1 3 5 5 N 1.46497 * 109.47444 * 120.00371 * 2 1 3 6 6 N 1.28724 * 125.31576 * 0.02562 * 5 2 1 7 7 N 1.28983 * 108.98458 * 179.97438 * 6 5 2 8 8 C 1.34185 * 107.25725 * 359.97438 * 7 6 5 9 9 C 1.47999 * 126.70237 * 180.02562 * 8 7 6 10 10 O 1.21537 * 120.00000 * 179.97438 * 9 8 7 11 11 N 1.34770 * 119.99893 * 359.97438 * 9 8 7 12 12 C 1.46509 * 120.00221 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47294 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.43213 * 307.54170 * 13 12 11 15 15 C 1.54889 * 110.48785 * 70.22657 * 13 12 11 16 16 C 1.54879 * 102.74848 * 156.62062 * 15 13 12 17 17 C 1.54263 * 104.19719 * 322.05435 * 16 15 13 18 18 H 1.09008 * 110.07578 * 142.91825 * 17 16 15 19 19 N 1.46496 * 110.03676 * 264.32439 * 17 16 15 20 20 C 1.36936 * 120.00650 * 272.16945 * 19 17 16 21 21 H 1.08002 * 119.99203 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00306 * 180.02562 * 20 19 17 23 23 N 1.31614 * 120.00101 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99791 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47398 * 59.99888 * 24 22 20 26 26 H 1.48502 * 109.46892 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47039 * 299.99525 * 24 22 20 28 28 C 1.53878 * 106.59819 * 23.61404 * 17 16 15 29 29 N 1.28864 * 125.32194 * 179.97438 * 5 2 1 30 30 H 1.09002 * 109.47015 * 299.99869 * 1 2 3 31 31 H 1.08999 * 109.47300 * 59.99597 * 1 2 3 32 32 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47062 * 180.02562 * 3 2 1 34 34 H 1.08991 * 109.47515 * 300.00076 * 3 2 1 35 35 H 1.09001 * 109.47074 * 60.00723 * 3 2 1 36 36 H 1.08998 * 109.47529 * 299.99843 * 4 2 1 37 37 H 1.09005 * 109.47320 * 60.00360 * 4 2 1 38 38 H 1.09003 * 109.47140 * 179.97438 * 4 2 1 39 39 H 0.96998 * 120.00324 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.46960 * 300.00127 * 12 11 9 41 41 H 1.09003 * 109.46672 * 59.99823 * 12 11 9 42 42 H 1.09002 * 110.75599 * 274.93581 * 15 13 12 43 43 H 1.09003 * 110.75542 * 38.30258 * 15 13 12 44 44 H 1.09009 * 110.48454 * 203.38052 * 16 15 13 45 45 H 1.09000 * 110.60132 * 80.79195 * 16 15 13 46 46 H 0.97007 * 119.99561 * 92.16350 * 19 17 16 47 47 H 0.97002 * 120.00353 * 180.02562 * 23 22 20 48 48 H 1.08994 * 110.02930 * 240.71092 * 28 17 16 49 49 H 1.09005 * 110.03088 * 119.27818 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2762 -1.2170 2.1066 7 7 2.0308 -1.7404 3.0123 8 6 3.3030 -1.5272 2.6425 9 6 4.5190 -1.9500 3.3725 10 8 5.6182 -1.6913 2.9232 11 7 4.4074 -2.6217 4.5355 12 6 5.6111 -3.0407 5.2580 13 6 5.2080 -3.7781 6.5364 14 1 4.5084 -3.1773 7.1177 15 6 4.5897 -5.1566 6.1952 16 6 4.8138 -5.9637 7.4979 17 6 6.2040 -5.5103 7.9894 18 1 6.2137 -5.4467 9.0776 19 7 7.2294 -6.4516 7.5330 20 6 7.5345 -7.5517 8.2892 21 1 7.0192 -7.7251 9.2225 22 6 8.5065 -8.4434 7.8569 23 7 9.1347 -8.2318 6.7199 24 14 8.9220 -9.9444 8.8883 25 1 7.7090 -10.7860 9.0488 26 1 9.9840 -10.7315 8.2115 27 1 9.4029 -9.5094 10.2241 28 6 6.4546 -4.1205 7.3781 29 7 3.2581 -0.8670 1.5006 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 3.5301 -2.8279 4.8943 40 1 6.2015 -3.7043 4.6261 41 1 6.2036 -2.1631 5.5166 42 1 3.5257 -5.0599 5.9789 43 1 5.1144 -5.6190 5.3591 44 1 4.8135 -7.0335 7.2887 45 1 4.0499 -5.7201 8.2363 46 1 7.6924 -6.2957 6.6949 47 1 9.8137 -8.8551 6.4176 48 1 7.3391 -4.1466 6.7418 49 1 6.5849 -3.3825 8.1696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086701295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:29 Heat of formation + Delta-G solvation = 65.696249 kcal Electronic energy + Delta-G solvation = -28560.492557 eV Core-core repulsion = 24559.587560 eV Total energy + Delta-G solvation = -4000.904996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.62127 -40.97004 -39.46500 -38.62248 -36.42492 -35.10127 -34.65505 -33.64974 -32.45516 -30.39555 -28.97148 -28.57374 -28.54455 -26.90323 -25.64357 -25.36975 -24.58483 -22.30158 -21.70001 -21.13069 -20.67201 -19.25720 -18.98132 -18.57915 -17.76610 -17.44559 -16.71040 -16.65592 -16.16709 -15.84261 -15.31759 -15.27881 -15.21227 -15.08963 -14.99553 -14.51850 -14.20361 -14.05592 -13.56875 -13.47481 -13.29703 -13.23335 -13.13474 -12.92316 -12.85301 -12.64899 -12.44263 -12.40302 -12.36671 -12.15892 -12.13085 -12.12268 -12.00452 -11.72763 -11.66296 -11.51823 -11.49630 -11.47614 -11.34811 -10.86276 -10.28919 -8.93462 -7.90799 -5.17901 -0.18585 0.23046 0.62174 1.47343 1.50262 1.56234 1.64881 1.84755 2.58634 2.76939 2.93794 3.40876 3.47748 3.55784 3.62908 3.67338 3.80928 3.87252 3.98128 4.22599 4.28536 4.40269 4.43398 4.51875 4.54938 4.58210 4.59907 4.61776 4.71818 4.72573 4.72756 4.80730 4.85348 4.93763 5.01726 5.09632 5.10417 5.16132 5.16550 5.17761 5.21975 5.26216 5.47461 5.53194 5.60416 5.69298 6.18479 6.32640 6.81078 7.01747 7.37304 8.18316 8.38859 9.32628 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.001809 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.172796 B =15477.356404 C =15637.033348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.157 4.157 4 C -0.159 4.159 5 N -0.109 5.109 6 N -0.057 5.057 7 N -0.264 5.264 8 C 0.113 3.887 9 C 0.615 3.385 10 O -0.547 6.547 11 N -0.684 5.684 12 C 0.132 3.868 13 C -0.085 4.085 14 H 0.112 0.888 15 C -0.109 4.109 16 C -0.139 4.139 17 C 0.161 3.839 18 H 0.045 0.955 19 N -0.734 5.734 20 C -0.236 4.236 21 H 0.075 0.925 22 C -0.081 4.081 23 N -0.971 5.971 24 Si 0.971 3.029 25 H -0.279 1.279 26 H -0.298 1.298 27 H -0.278 1.278 28 C -0.115 4.115 29 N -0.260 5.260 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.062 0.938 39 H 0.421 0.579 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.370 0.630 47 H 0.249 0.751 48 H 0.054 0.946 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.595 22.760 -14.873 35.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.215 4.215 4 C -0.217 4.217 5 N -0.026 5.026 6 N -0.049 5.049 7 N -0.139 5.139 8 C -0.170 4.170 9 C 0.395 3.605 10 O -0.422 6.422 11 N -0.337 5.337 12 C 0.010 3.990 13 C -0.103 4.103 14 H 0.130 0.870 15 C -0.147 4.147 16 C -0.179 4.179 17 C 0.053 3.947 18 H 0.063 0.937 19 N -0.374 5.374 20 C -0.368 4.368 21 H 0.093 0.907 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.800 3.200 25 H -0.206 1.206 26 H -0.225 1.225 27 H -0.204 1.204 28 C -0.154 4.154 29 N -0.114 5.114 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.259 0.741 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.202 0.798 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.407 22.895 -15.144 35.435 hybrid contribution 1.090 -1.434 0.422 1.850 sum -21.317 21.461 -14.723 33.641 Atomic orbital electron populations 1.22182 0.87812 1.04783 1.05983 1.22221 0.98137 0.93388 0.78169 1.22307 1.02500 0.90978 1.05763 1.22319 1.02492 1.01157 0.95736 1.51320 0.99990 1.32823 1.18444 1.78808 1.21468 1.08887 0.95720 1.76093 0.99659 1.18002 1.20108 1.25153 0.94521 1.03338 0.94003 1.16233 0.84431 0.78720 0.81138 1.90848 1.26715 1.56647 1.67960 1.45609 1.12060 1.54973 1.21013 1.21564 0.85825 0.99189 0.92470 1.22129 0.97966 0.96066 0.94173 0.86993 1.22469 1.00721 0.94522 0.96971 1.22953 0.98298 0.98983 0.97676 1.21146 0.88247 0.88790 0.96536 0.93650 1.42756 1.44080 1.25698 1.24845 1.19620 1.14973 1.00180 1.02008 0.90697 1.25539 1.00218 1.02542 0.98949 1.69817 1.29582 1.39338 1.23528 0.85248 0.77190 0.79587 0.77977 1.20571 1.22485 1.20374 1.22366 0.97299 0.96451 0.99264 1.74966 1.04128 1.17256 1.15042 0.90971 0.85498 0.91199 0.91883 0.85298 0.91766 0.92035 0.85246 0.91922 0.74091 0.92474 0.90296 0.89790 0.93825 0.94402 0.90393 0.79765 0.94260 0.92748 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 7.90 71.98 0.57 -0.11 16 2 C 0.16 1.48 1.30 3.60 0.00 1.49 16 3 C -0.16 -1.01 8.66 71.98 0.62 -0.39 16 4 C -0.16 -1.15 8.66 71.98 0.62 -0.52 16 5 N -0.11 -2.07 3.72 -152.26 -0.57 -2.63 16 6 N -0.06 -1.21 12.21 37.02 0.45 -0.76 16 7 N -0.26 -6.45 12.26 -52.36 -0.64 -7.09 16 8 C 0.11 3.02 8.14 137.15 1.12 4.14 16 9 C 0.61 17.69 7.84 86.83 0.68 18.37 16 10 O -0.55 -19.60 17.10 -3.83 -0.07 -19.67 16 11 N -0.68 -16.11 5.44 -465.81 -2.54 -18.65 16 12 C 0.13 3.34 4.96 86.38 0.43 3.77 16 13 C -0.08 -2.01 2.89 -9.72 -0.03 -2.04 16 14 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 15 C -0.11 -3.03 6.19 31.88 0.20 -2.83 16 16 C -0.14 -4.63 6.54 31.66 0.21 -4.42 16 17 C 0.16 6.15 3.55 45.72 0.16 6.31 16 18 H 0.05 1.75 8.09 -2.38 -0.02 1.73 16 19 N -0.73 -37.12 5.08 -319.51 -1.62 -38.74 16 20 C -0.24 -13.22 9.96 84.03 0.84 -12.38 16 21 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 23 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 24 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 C -0.11 -3.47 6.14 31.32 0.19 -3.28 16 29 N -0.26 -6.51 11.85 -52.32 -0.62 -7.13 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.13 -0.03 8.14 -2.38 -0.02 -0.05 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.42 8.08 8.19 -92.71 -0.76 7.32 16 40 H 0.06 1.73 8.02 -2.39 -0.02 1.71 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.04 1.44 7.97 -2.39 -0.02 1.42 16 44 H 0.04 1.52 8.04 -2.38 -0.02 1.50 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.37 20.38 7.52 -92.70 -0.70 19.68 16 47 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 48 H 0.05 1.88 7.31 -2.39 -0.02 1.86 16 49 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -76.68 405.06 2.29 -74.38 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.49 Total: 27.92 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.08 Total: 3.85 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -5.25 Total: -135.57 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.07 Total: -19.67 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.68 2.29 -74.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086701295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.081 kcal (2) G-P(sol) polarization free energy of solvation -76.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds