Wall clock time and date at job start Tue Mar 31 2020 19:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99770 * 2 1 4 4 C 1.53001 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47223 * 179.97438 * 4 3 2 6 6 N 1.28448 * 125.18694 * 85.77061 * 5 4 3 7 7 C 1.30866 * 110.92207 * 179.97438 * 6 5 4 8 8 C 1.39665 * 107.86269 * 359.97438 * 7 6 5 9 9 C 1.36591 * 125.19063 * 265.45710 * 5 4 3 10 10 C 1.47168 * 126.88603 * 359.97438 * 9 5 4 11 11 O 1.21624 * 119.99906 * 5.41138 * 10 9 5 12 12 N 1.34774 * 120.00036 * 185.42060 * 10 9 5 13 13 C 1.46497 * 119.99825 * 185.12620 * 12 10 9 14 14 C 1.53009 * 109.47180 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.01149 * 305.06374 * 14 13 12 16 16 C 1.53869 * 110.03068 * 66.44899 * 14 13 12 17 17 C 1.54270 * 106.59727 * 119.28673 * 16 14 13 18 18 C 1.54896 * 104.19405 * 23.60964 * 17 16 14 19 19 H 1.08991 * 110.75319 * 80.37412 * 18 17 16 20 20 N 1.46498 * 110.75227 * 203.55981 * 18 17 16 21 21 C 1.36944 * 119.99933 * 273.54124 * 20 18 17 22 22 H 1.07998 * 119.99971 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99449 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00713 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99457 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46960 * 59.99757 * 25 23 21 27 27 H 1.48492 * 109.47069 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46975 * 299.99907 * 25 23 21 29 29 C 1.54260 * 110.03047 * 183.62063 * 14 13 12 30 30 H 1.08997 * 109.47506 * 300.00207 * 1 2 3 31 31 H 1.09008 * 109.47070 * 60.00208 * 1 2 3 32 32 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47360 * 299.99470 * 3 2 1 34 34 H 1.08992 * 109.47237 * 60.00096 * 3 2 1 35 35 H 1.09001 * 109.47066 * 300.00525 * 4 3 2 36 36 H 1.09001 * 109.47292 * 59.99547 * 4 3 2 37 37 H 1.07999 * 126.06246 * 180.02562 * 7 6 5 38 38 H 1.08001 * 127.31995 * 179.97438 * 8 7 6 39 39 H 0.96996 * 120.00272 * 5.12041 * 12 10 9 40 40 H 1.08998 * 109.47045 * 299.99297 * 13 12 10 41 41 H 1.08994 * 109.47380 * 59.99653 * 13 12 10 42 42 H 1.08997 * 110.03765 * 238.56840 * 16 14 13 43 43 H 1.08996 * 110.03778 * 0.02562 * 16 14 13 44 44 H 1.08994 * 110.48954 * 142.28930 * 17 16 14 45 45 H 1.09004 * 110.48464 * 264.80097 * 17 16 14 46 46 H 0.97003 * 120.00168 * 93.55304 * 20 18 17 47 47 H 0.96998 * 119.99976 * 179.97438 * 24 23 21 48 48 H 1.08996 * 110.48979 * 335.78029 * 29 14 13 49 49 H 1.09005 * 110.48994 * 98.42780 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 7 4.3612 3.2314 1.0466 7 6 4.8993 4.3800 0.7245 8 6 5.0303 4.4170 -0.6655 9 6 4.5326 3.2056 -1.1130 10 6 4.4507 2.7456 -2.5086 11 8 3.8974 1.6948 -2.7711 12 7 4.9890 3.4887 -3.4957 13 6 4.8106 3.0892 -4.8938 14 6 5.5146 4.0960 -5.8058 15 1 5.1551 5.1035 -5.5969 16 6 7.0369 4.0249 -5.5933 17 6 7.6532 3.6267 -6.9503 18 6 6.5962 4.0698 -7.9922 19 1 6.6738 5.1388 -8.1905 20 7 6.7359 3.3023 -9.2321 21 6 7.6100 3.7190 -10.2005 22 1 8.1966 4.6132 -10.0499 23 6 7.7420 2.9919 -11.3756 24 7 7.0267 1.9024 -11.5594 25 14 8.9348 3.5599 -12.6963 26 1 10.3108 3.5940 -12.1389 27 1 8.8881 2.6183 -13.8436 28 1 8.5533 4.9193 -13.1564 29 6 5.2588 3.7384 -7.2845 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6436 -0.8891 37 1 5.1912 5.1603 1.4118 38 1 5.4365 5.2192 -1.2638 39 1 5.4945 4.2881 -3.2805 40 1 5.2393 2.0987 -5.0462 41 1 3.7472 3.0654 -5.1320 42 1 7.4164 4.9982 -5.2822 43 1 7.2742 3.2730 -4.8408 44 1 8.5930 4.1545 -7.1121 45 1 7.8092 2.5489 -6.9968 46 1 6.2092 2.4990 -9.3673 47 1 7.1188 1.3946 -12.3807 48 1 5.0260 2.6785 -7.3859 49 1 4.4513 4.3479 -7.6902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086727897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:54 Heat of formation + Delta-G solvation = 0.018826 kcal Electronic energy + Delta-G solvation = -28483.986556 eV Core-core repulsion = 24447.940821 eV Total energy + Delta-G solvation = -4036.045734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.92056 -39.76150 -38.38870 -38.12433 -35.21430 -34.20034 -33.41420 -31.57343 -30.55648 -29.70644 -28.97915 -27.33046 -26.71488 -24.89777 -23.90105 -23.15032 -22.95038 -21.64527 -20.44500 -19.69421 -19.40718 -18.30420 -17.16856 -17.06767 -16.52627 -16.49573 -16.14175 -16.05140 -15.49739 -15.10965 -14.99087 -14.64266 -14.56021 -14.20357 -13.88746 -13.84246 -13.39211 -13.22801 -12.91809 -12.82128 -12.51252 -12.23583 -11.96910 -11.86532 -11.75296 -11.19248 -11.15274 -10.91579 -10.78885 -10.64095 -10.59031 -10.34741 -10.28514 -10.18152 -10.14839 -9.85323 -9.66510 -9.64843 -9.46076 -9.21759 -8.87647 -6.94948 -5.76789 -3.05539 0.89379 1.85520 2.24579 2.84875 2.92315 3.43501 3.47968 3.49071 3.52039 4.12966 4.27014 4.46014 4.57822 4.57915 4.71519 4.79248 4.83030 4.87650 4.92682 4.95653 5.01001 5.13654 5.25025 5.27281 5.31320 5.40470 5.48003 5.50593 5.64682 5.66402 5.85425 5.93144 5.96197 6.01065 6.08531 6.15344 6.28284 6.29798 6.30359 6.43191 6.54632 6.61671 6.68883 6.85338 7.10358 7.15987 7.66927 7.69738 7.86063 8.42157 9.52891 10.11650 10.45556 11.45765 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.001916 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.384256 B =14612.705869 C =15727.723180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.056 3.944 4 C 0.118 3.882 5 N -0.255 5.255 6 N -0.277 5.277 7 C 0.000 4.000 8 C -0.187 4.187 9 C -0.033 4.033 10 C 0.585 3.415 11 O -0.536 6.536 12 N -0.708 5.708 13 C 0.127 3.873 14 C -0.100 4.100 15 H 0.075 0.925 16 C -0.121 4.121 17 C -0.144 4.144 18 C 0.177 3.823 19 H 0.053 0.947 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.121 4.121 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.188 0.812 38 H 0.163 0.837 39 H 0.404 0.596 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.070 0.930 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 4.285 27.161 29.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.021 4.021 4 C -0.003 4.003 5 N -0.044 5.044 6 N -0.109 5.109 7 C -0.176 4.176 8 C -0.216 4.216 9 C -0.161 4.161 10 C 0.370 3.630 11 O -0.413 6.413 12 N -0.359 5.359 13 C 0.005 3.995 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.160 4.160 17 C -0.184 4.184 18 C 0.067 3.933 19 H 0.071 0.929 20 N -0.361 5.361 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.160 4.160 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.146 0.854 37 H 0.205 0.795 38 H 0.180 0.820 39 H 0.239 0.761 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.218 0.782 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.034 2.637 27.705 29.584 hybrid contribution 0.860 1.187 -1.289 1.952 sum -9.175 3.824 26.416 28.224 Atomic orbital electron populations 1.22791 0.79973 1.03225 1.00266 1.87801 1.20505 1.26420 1.95530 1.22603 0.92392 0.85805 1.01349 1.21884 0.92698 0.78281 1.07409 1.45509 1.42292 1.14469 1.02120 1.73246 1.18207 1.05793 1.13689 1.23619 1.03170 0.95741 0.95056 1.22299 1.06266 0.97315 0.95759 1.21518 1.09322 0.95326 0.89948 1.16929 0.79144 0.83906 0.83026 1.90827 1.44355 1.22386 1.83777 1.45743 1.54710 1.28987 1.06498 1.21668 1.00949 0.99088 0.77812 1.21969 0.96068 0.98266 0.95678 0.90655 1.22223 0.94016 1.00763 0.98954 1.23075 0.99881 1.01432 0.94056 1.21148 0.90682 0.95239 0.86271 0.92945 1.42373 1.49205 1.29773 1.14747 1.19196 1.15312 1.07121 0.95459 0.91251 1.24753 1.00229 0.97649 0.98379 1.69647 1.43654 1.17807 1.27006 0.86276 0.80843 0.77582 0.81527 1.21294 1.21715 1.21292 1.22567 0.99387 1.01904 0.92167 0.93906 0.93671 0.89040 0.92279 0.92531 0.87515 0.85394 0.79465 0.81958 0.76115 0.90619 0.91179 0.92320 0.92347 0.92581 0.91804 0.78193 0.93449 0.91131 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -3.87 10.70 -35.23 -0.38 -4.25 16 3 C 0.06 0.54 6.26 37.16 0.23 0.77 16 4 C 0.12 1.16 6.24 -4.04 -0.03 1.13 16 5 N -0.26 -2.70 3.35 -57.14 -0.19 -2.89 16 6 N -0.28 -2.87 11.90 30.59 0.36 -2.51 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -1.47 10.50 -38.99 -0.41 -1.88 16 9 C -0.03 -0.34 6.96 -82.06 -0.57 -0.91 16 10 C 0.59 6.79 7.78 -12.64 -0.10 6.69 16 11 O -0.54 -7.82 14.67 5.26 0.08 -7.74 16 12 N -0.71 -6.84 5.27 -61.47 -0.32 -7.16 16 13 C 0.13 1.44 4.71 -4.04 -0.02 1.42 16 14 C -0.10 -1.15 2.98 -89.50 -0.27 -1.42 16 15 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 16 C -0.12 -1.48 6.13 -25.61 -0.16 -1.64 16 17 C -0.14 -2.41 6.51 -25.07 -0.16 -2.58 16 18 C 0.18 3.34 3.53 -65.93 -0.23 3.11 16 19 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 20 N -0.72 -17.72 5.26 -51.50 -0.27 -17.99 16 21 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 C -0.12 -1.83 5.97 -25.07 -0.15 -1.98 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.13 1.43 6.18 -51.93 -0.32 1.11 16 37 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.16 0.78 7.62 -52.49 -0.40 0.38 16 39 H 0.40 2.88 7.39 -40.82 -0.30 2.58 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.69 7.58 -51.93 -0.39 0.29 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.38 10.07 7.73 -40.82 -0.32 9.76 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 1.13 7.74 -51.93 -0.40 0.72 16 49 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -33.33 403.58 -8.16 -41.49 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -8.02 Total: 8.43 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.20 Total: -3.36 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.30 Total: -57.89 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.30 Total: -11.99 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.33 -8.16 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086727897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.511 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds