Wall clock time and date at job start Tue Mar 31 2020 19:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99770 * 2 1 4 4 C 1.53001 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47223 * 179.97438 * 4 3 2 6 6 N 1.28448 * 125.18694 * 85.77061 * 5 4 3 7 7 C 1.30866 * 110.92207 * 179.97438 * 6 5 4 8 8 C 1.39665 * 107.86269 * 359.97438 * 7 6 5 9 9 C 1.36591 * 125.19063 * 265.45710 * 5 4 3 10 10 C 1.47168 * 126.88603 * 359.97438 * 9 5 4 11 11 O 1.21624 * 119.99906 * 5.41138 * 10 9 5 12 12 N 1.34774 * 120.00036 * 185.42060 * 10 9 5 13 13 C 1.46497 * 119.99825 * 185.12620 * 12 10 9 14 14 C 1.53009 * 109.47180 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.01149 * 305.06374 * 14 13 12 16 16 C 1.53869 * 110.03068 * 66.44899 * 14 13 12 17 17 C 1.54270 * 106.59727 * 119.28673 * 16 14 13 18 18 C 1.54896 * 104.19405 * 23.60964 * 17 16 14 19 19 H 1.08991 * 110.75319 * 80.37412 * 18 17 16 20 20 N 1.46498 * 110.75227 * 203.55981 * 18 17 16 21 21 C 1.36944 * 119.99933 * 273.54124 * 20 18 17 22 22 H 1.07998 * 119.99971 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99449 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00713 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99457 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46960 * 59.99757 * 25 23 21 27 27 H 1.48492 * 109.47069 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46975 * 299.99907 * 25 23 21 29 29 C 1.54260 * 110.03047 * 183.62063 * 14 13 12 30 30 H 1.08997 * 109.47506 * 300.00207 * 1 2 3 31 31 H 1.09008 * 109.47070 * 60.00208 * 1 2 3 32 32 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47360 * 299.99470 * 3 2 1 34 34 H 1.08992 * 109.47237 * 60.00096 * 3 2 1 35 35 H 1.09001 * 109.47066 * 300.00525 * 4 3 2 36 36 H 1.09001 * 109.47292 * 59.99547 * 4 3 2 37 37 H 1.07999 * 126.06246 * 180.02562 * 7 6 5 38 38 H 1.08001 * 127.31995 * 179.97438 * 8 7 6 39 39 H 0.96996 * 120.00272 * 5.12041 * 12 10 9 40 40 H 1.08998 * 109.47045 * 299.99297 * 13 12 10 41 41 H 1.08994 * 109.47380 * 59.99653 * 13 12 10 42 42 H 1.08997 * 110.03765 * 238.56840 * 16 14 13 43 43 H 1.08996 * 110.03778 * 0.02562 * 16 14 13 44 44 H 1.08994 * 110.48954 * 142.28930 * 17 16 14 45 45 H 1.09004 * 110.48464 * 264.80097 * 17 16 14 46 46 H 0.97003 * 120.00168 * 93.55304 * 20 18 17 47 47 H 0.96998 * 119.99976 * 179.97438 * 24 23 21 48 48 H 1.08996 * 110.48979 * 335.78029 * 29 14 13 49 49 H 1.09005 * 110.48994 * 98.42780 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 7 4.3612 3.2314 1.0466 7 6 4.8993 4.3800 0.7245 8 6 5.0303 4.4170 -0.6655 9 6 4.5326 3.2056 -1.1130 10 6 4.4507 2.7456 -2.5086 11 8 3.8974 1.6948 -2.7711 12 7 4.9890 3.4887 -3.4957 13 6 4.8106 3.0892 -4.8938 14 6 5.5146 4.0960 -5.8058 15 1 5.1551 5.1035 -5.5969 16 6 7.0369 4.0249 -5.5933 17 6 7.6532 3.6267 -6.9503 18 6 6.5962 4.0698 -7.9922 19 1 6.6738 5.1388 -8.1905 20 7 6.7359 3.3023 -9.2321 21 6 7.6100 3.7190 -10.2005 22 1 8.1966 4.6132 -10.0499 23 6 7.7420 2.9919 -11.3756 24 7 7.0267 1.9024 -11.5594 25 14 8.9348 3.5599 -12.6963 26 1 10.3108 3.5940 -12.1389 27 1 8.8881 2.6183 -13.8436 28 1 8.5533 4.9193 -13.1564 29 6 5.2588 3.7384 -7.2845 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6436 -0.8891 37 1 5.1912 5.1603 1.4118 38 1 5.4365 5.2192 -1.2638 39 1 5.4945 4.2881 -3.2805 40 1 5.2393 2.0987 -5.0462 41 1 3.7472 3.0654 -5.1320 42 1 7.4164 4.9982 -5.2822 43 1 7.2742 3.2730 -4.8408 44 1 8.5930 4.1545 -7.1121 45 1 7.8092 2.5489 -6.9968 46 1 6.2092 2.4990 -9.3673 47 1 7.1188 1.3946 -12.3807 48 1 5.0260 2.6785 -7.3859 49 1 4.4513 4.3479 -7.6902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086727897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:53 Heat of formation + Delta-G solvation = -23.600836 kcal Electronic energy + Delta-G solvation = -28485.010781 eV Core-core repulsion = 24447.940821 eV Total energy + Delta-G solvation = -4037.069960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.60089 -40.69553 -39.35362 -39.07773 -36.43020 -35.27205 -34.70055 -32.79894 -31.93277 -30.37604 -30.13416 -28.76427 -27.32162 -26.14705 -24.97241 -24.59494 -23.76756 -22.37935 -21.47011 -20.90926 -20.49649 -19.26032 -18.94491 -17.85220 -17.36987 -17.19178 -17.05951 -16.91453 -16.71484 -16.30830 -15.96828 -15.69070 -15.48622 -15.32591 -15.08618 -14.86742 -14.49647 -14.28276 -14.05679 -13.89584 -13.57752 -13.32832 -13.15630 -12.92132 -12.67801 -12.63402 -12.39348 -12.36641 -12.13688 -11.95278 -11.85908 -11.76637 -11.63963 -11.51580 -11.24937 -11.14465 -10.86790 -10.85155 -10.44100 -10.14612 -10.00577 -8.96193 -7.92600 -5.20534 0.15597 1.15974 1.47411 1.50362 1.56391 1.62148 2.03979 2.12210 2.57695 2.85713 3.39463 3.45553 3.50704 3.70290 3.74962 3.80335 3.82604 3.94363 4.07769 4.13380 4.32973 4.38998 4.40595 4.41221 4.49389 4.51327 4.54151 4.64860 4.65934 4.68200 4.76638 4.81689 4.81756 4.86217 4.92588 5.12062 5.14593 5.22790 5.30150 5.46859 5.51048 5.52017 5.57885 5.65537 5.67125 5.96125 6.30286 6.38889 6.99215 7.07854 7.35368 8.14930 8.35742 9.30924 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.001916 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.384256 B =14612.705869 C =15727.723180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.066 3.934 4 C 0.120 3.880 5 N -0.267 5.267 6 N -0.300 5.300 7 C 0.001 3.999 8 C -0.168 4.168 9 C -0.058 4.058 10 C 0.584 3.416 11 O -0.575 6.575 12 N -0.692 5.692 13 C 0.135 3.865 14 C -0.083 4.083 15 H 0.108 0.892 16 C -0.109 4.109 17 C -0.140 4.140 18 C 0.163 3.837 19 H 0.054 0.946 20 N -0.737 5.737 21 C -0.237 4.237 22 H 0.077 0.923 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.972 3.028 26 H -0.279 1.279 27 H -0.298 1.298 28 H -0.276 1.276 29 C -0.116 4.116 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.198 0.802 39 H 0.420 0.580 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.054 0.946 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 7.134 29.189 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.012 4.012 4 C -0.001 4.001 5 N -0.056 5.056 6 N -0.131 5.131 7 C -0.175 4.175 8 C -0.197 4.197 9 C -0.185 4.185 10 C 0.370 3.630 11 O -0.455 6.455 12 N -0.344 5.344 13 C 0.012 3.988 14 C -0.102 4.102 15 H 0.127 0.873 16 C -0.147 4.147 17 C -0.181 4.181 18 C 0.055 3.945 19 H 0.072 0.928 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.095 0.905 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.203 1.203 29 C -0.155 4.155 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.238 0.762 38 H 0.215 0.785 39 H 0.258 0.742 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.515 5.557 29.784 31.757 hybrid contribution 0.694 0.355 -1.837 1.995 sum -8.821 5.912 27.947 29.897 Atomic orbital electron populations 1.22995 0.78510 1.04441 1.00966 1.87773 1.22227 1.26803 1.95621 1.22493 0.92210 0.85589 1.00918 1.21791 0.92923 0.78576 1.06829 1.45538 1.43083 1.14654 1.02366 1.73239 1.19071 1.06862 1.13978 1.24285 1.01793 0.95511 0.95876 1.22768 1.04200 0.96726 0.95969 1.21549 1.11159 0.96618 0.89212 1.17167 0.78539 0.83425 0.83870 1.90814 1.46124 1.24159 1.84419 1.45511 1.54340 1.29198 1.05382 1.21436 1.00602 0.98048 0.78734 1.21833 0.95665 0.99813 0.92853 0.87342 1.22158 0.93873 1.02556 0.96072 1.22908 0.99246 0.99594 0.96309 1.21476 0.93576 0.94537 0.84911 0.92797 1.42617 1.48665 1.29917 1.16391 1.19611 1.14796 1.06668 0.95813 0.90547 1.25577 1.02579 0.98224 1.00906 1.69814 1.45810 1.19334 1.27341 0.85229 0.78949 0.77155 0.78561 1.20488 1.22461 1.20250 1.22469 0.97453 1.01122 0.94437 0.92461 0.93684 0.87660 0.93684 0.91731 0.86678 0.87270 0.76182 0.78471 0.74202 0.92801 0.91446 0.89209 0.91557 0.93232 0.94502 0.79761 0.94173 0.92748 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.32 10.70 -148.98 -1.59 -9.91 16 3 C 0.07 1.27 6.26 71.98 0.45 1.73 16 4 C 0.12 2.42 6.24 86.38 0.54 2.96 16 5 N -0.27 -5.46 3.35 -334.68 -1.12 -6.58 16 6 N -0.30 -5.69 11.90 -57.14 -0.68 -6.37 16 7 C 0.00 0.02 12.03 85.18 1.02 1.04 16 8 C -0.17 -2.03 10.50 22.65 0.24 -1.79 16 9 C -0.06 -1.10 6.96 40.79 0.28 -0.82 16 10 C 0.58 12.98 7.78 86.59 0.67 13.65 16 11 O -0.57 -17.16 14.67 -4.11 -0.06 -17.22 16 12 N -0.69 -11.67 5.27 -466.63 -2.46 -14.13 16 13 C 0.14 2.83 4.71 86.38 0.41 3.24 16 14 C -0.08 -1.65 2.98 -10.07 -0.03 -1.68 16 15 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 16 C -0.11 -2.31 6.13 31.32 0.19 -2.12 16 17 C -0.14 -4.58 6.51 31.67 0.21 -4.38 16 18 C 0.16 6.07 3.53 46.29 0.16 6.24 16 19 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 20 N -0.74 -36.92 5.26 -316.84 -1.67 -38.58 16 21 C -0.24 -13.09 9.98 84.03 0.84 -12.25 16 22 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 25 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 C -0.12 -3.38 5.97 31.67 0.19 -3.19 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 2.61 6.18 -2.39 -0.01 2.60 16 37 H 0.22 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.20 0.81 7.62 -2.91 -0.02 0.79 16 39 H 0.42 4.23 7.39 -92.71 -0.69 3.54 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.36 7.58 -2.39 -0.02 1.34 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 46 H 0.37 20.20 7.73 -92.71 -0.72 19.48 16 47 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 48 H 0.05 1.77 7.74 -2.39 -0.02 1.75 16 49 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -75.23 403.58 1.18 -74.05 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.44 Total: 30.32 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.89 Total: 0.03 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -5.64 Total: -125.53 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.65 Total: -27.14 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -75.23 1.18 -74.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086727897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.450 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds