Wall clock time and date at job start Tue Mar 31 2020 19:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99919 * 2 1 4 4 C 1.53002 * 109.47075 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75612 * 125.00095 * 5 4 3 7 7 C 1.38044 * 107.41739 * 180.20936 * 6 5 4 8 8 C 1.47435 * 126.41140 * 179.73890 * 7 6 5 9 9 O 1.21596 * 119.99982 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99430 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99535 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47106 * 179.97438 * 11 10 8 13 13 H 1.09003 * 110.43091 * 307.54206 * 12 11 10 14 14 C 1.54890 * 110.48835 * 70.22126 * 12 11 10 15 15 C 1.54888 * 102.74896 * 156.61997 * 14 12 11 16 16 C 1.54263 * 104.19691 * 322.06087 * 15 14 12 17 17 H 1.08999 * 110.07111 * 142.91625 * 16 15 14 18 18 N 1.46502 * 110.03216 * 264.32532 * 16 15 14 19 19 C 1.36937 * 119.99552 * 272.16733 * 18 16 15 20 20 H 1.07996 * 120.00619 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99805 * 179.97438 * 19 18 16 22 22 N 1.31628 * 119.99666 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47298 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47195 * 120.00097 * 23 21 19 26 26 H 1.48503 * 109.46963 * 239.99916 * 23 21 19 27 27 C 1.53877 * 106.59953 * 23.60941 * 16 15 14 28 28 C 1.41293 * 107.17129 * 359.63934 * 7 6 5 29 29 N 1.30448 * 108.02045 * 0.36570 * 28 7 6 30 30 H 1.08994 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47270 * 300.00372 * 1 2 3 32 32 H 1.09000 * 109.47335 * 60.00536 * 1 2 3 33 33 H 1.09001 * 109.47318 * 59.99558 * 3 2 1 34 34 H 1.09003 * 109.46964 * 299.99714 * 3 2 1 35 35 H 1.09001 * 109.47171 * 59.99759 * 4 3 2 36 36 H 1.08993 * 109.47448 * 299.99359 * 4 3 2 37 37 H 1.08002 * 126.28609 * 359.93777 * 6 5 4 38 38 H 0.96994 * 120.00920 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.46509 * 299.99572 * 11 10 8 40 40 H 1.08993 * 109.47057 * 59.99647 * 11 10 8 41 41 H 1.09001 * 110.75566 * 274.93921 * 14 12 11 42 42 H 1.09003 * 110.75509 * 38.30483 * 14 12 11 43 43 H 1.09000 * 110.48506 * 203.37775 * 15 14 12 44 44 H 1.09005 * 110.59686 * 80.79517 * 15 14 12 45 45 H 0.96991 * 120.00133 * 92.16317 * 18 16 15 46 46 H 0.96998 * 119.99124 * 179.97438 * 22 21 19 47 47 H 1.09001 * 110.03076 * 240.71604 * 27 16 15 48 48 H 1.08993 * 110.03367 * 119.28574 * 27 16 15 49 49 H 1.07994 * 125.98632 * 180.11912 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9861 0.8926 7 6 5.3229 4.2859 0.5389 8 6 6.2528 5.1901 1.2398 9 8 6.8397 4.8074 2.2336 10 7 6.4523 6.4407 0.7788 11 6 7.3768 7.3391 1.4750 12 6 7.4203 8.6866 0.7517 13 1 7.6293 8.5429 -0.3084 14 6 6.0861 9.4492 0.9455 15 6 6.4995 10.9245 0.7181 16 6 7.8938 11.0314 1.3693 17 1 8.5326 11.6892 0.7799 18 7 7.7713 11.5442 2.7362 19 6 7.7744 12.8945 2.9636 20 1 7.8676 13.5815 2.1355 21 6 7.6578 13.3805 4.2587 22 7 7.5438 12.5433 5.2680 23 14 7.6627 15.2225 4.5691 24 1 7.8013 15.9418 3.2774 25 1 6.3884 15.6180 5.2211 26 1 8.8017 15.5720 5.4556 27 6 8.4793 9.6085 1.3907 28 6 4.5755 4.5866 -0.6219 29 7 3.8695 3.5342 -0.9312 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 5.4229 2.4431 1.7352 38 1 5.9845 6.7459 -0.0141 39 1 7.0367 7.4873 2.4999 40 1 8.3740 6.8991 1.4831 41 1 5.3507 9.1354 0.2047 42 1 5.7031 9.3068 1.9560 43 1 5.7965 11.5976 1.2089 44 1 6.5581 11.1464 -0.3475 45 1 7.6880 10.9273 3.4799 46 1 7.4627 12.8829 6.1729 47 1 8.6723 9.2996 2.4180 48 1 9.4017 9.5756 0.8109 49 1 4.5841 5.5247 -1.1568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086864708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:03 Heat of formation + Delta-G solvation = -3.113638 kcal Electronic energy + Delta-G solvation = -27806.899565 eV Core-core repulsion = 23770.717997 eV Total energy + Delta-G solvation = -4036.181568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.75193 -39.38809 -38.54318 -37.97184 -34.84527 -34.38969 -33.20368 -30.94398 -30.66760 -29.80427 -28.76191 -27.31513 -26.79608 -24.63738 -23.88990 -23.18335 -22.57169 -21.10323 -20.35845 -19.74134 -19.13011 -18.22728 -17.12989 -17.04879 -16.87338 -16.12785 -16.00314 -15.82231 -15.39778 -15.12881 -14.78953 -14.74187 -14.44855 -14.02830 -13.85604 -13.54146 -13.23115 -13.22120 -13.10534 -12.63124 -12.59941 -12.28506 -12.10604 -11.95677 -11.42642 -11.33288 -11.17168 -10.78224 -10.70882 -10.54219 -10.43744 -10.35444 -10.20776 -10.16132 -10.01798 -9.96616 -9.79195 -9.59327 -9.17408 -8.86515 -8.84152 -6.89799 -5.73159 -3.01200 1.19819 1.73779 1.87372 3.14984 3.26351 3.39386 3.45100 3.50777 3.53017 4.00324 4.26296 4.39965 4.41318 4.60114 4.62181 4.73898 4.76769 4.83853 4.90978 4.97372 5.01718 5.03802 5.10772 5.14693 5.17914 5.40144 5.59047 5.63877 5.77722 5.81670 5.96075 6.01660 6.07492 6.14001 6.18877 6.27214 6.32138 6.39742 6.45151 6.49761 6.52304 6.69956 6.80749 6.95875 7.12426 7.14561 7.56223 7.74845 8.28495 8.46261 9.56874 10.17016 10.50863 11.49545 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.001651 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.322330 B =16957.182815 C =17281.477285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.134 3.866 5 N -0.363 5.363 6 C 0.132 3.868 7 C -0.288 4.288 8 C 0.591 3.409 9 O -0.550 6.550 10 N -0.721 5.721 11 C 0.128 3.872 12 C -0.103 4.103 13 H 0.074 0.926 14 C -0.112 4.112 15 C -0.146 4.146 16 C 0.174 3.826 17 H 0.048 0.952 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.121 4.121 28 C 0.085 3.915 29 N -0.297 5.297 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.398 0.602 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 -25.213 -14.805 31.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.019 4.019 7 C -0.303 4.303 8 C 0.378 3.622 9 O -0.429 6.429 10 N -0.372 5.372 11 C 0.005 3.995 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.150 4.150 15 C -0.187 4.187 16 C 0.063 3.937 17 H 0.066 0.934 18 N -0.362 5.362 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.160 4.160 28 C -0.103 4.103 29 N -0.117 5.117 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.232 0.768 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.984 -26.099 -14.904 31.999 hybrid contribution 0.010 1.592 0.669 1.727 sum -10.975 -24.507 -14.235 30.392 Atomic orbital electron populations 1.22795 0.79774 1.03207 1.00491 1.87775 1.20721 1.26802 1.95625 1.22650 0.92377 0.85475 1.02222 1.21503 0.92830 0.78572 1.05797 1.48319 1.32998 1.12068 1.20903 1.23020 0.90590 0.94291 0.93992 1.20333 1.10580 0.96321 1.03100 1.17195 0.80555 0.81136 0.83270 1.90788 1.50063 1.75905 1.26153 1.45788 1.46750 1.13030 1.31613 1.21521 0.92859 0.88563 0.96530 1.22236 0.97503 0.93134 0.99337 0.90727 1.22496 0.95223 0.96001 1.01268 1.23116 1.00938 0.95560 0.99068 1.20806 0.92984 0.91880 0.87980 0.93416 1.42555 1.87460 1.04571 1.01613 1.19312 1.41824 0.83511 0.92256 0.91178 1.24739 1.03124 0.97505 0.95689 1.69679 1.57295 1.32672 0.98440 0.86148 0.77133 0.85454 0.77651 1.20602 1.21980 1.21940 1.22464 0.96893 0.95505 1.01159 1.24113 0.93475 0.97795 0.94931 1.77160 1.24218 0.96912 1.13390 0.89089 0.93698 0.93638 0.92472 0.91419 0.88267 0.87198 0.79300 0.76848 0.90925 0.91602 0.92985 0.91287 0.91027 0.93354 0.78252 0.93621 0.90880 0.92071 0.79198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.63 10.70 -35.23 -0.38 -3.00 16 3 C 0.05 0.31 6.11 37.16 0.23 0.54 16 4 C 0.13 0.74 6.86 -4.04 -0.03 0.71 16 5 N -0.36 -2.95 3.65 -60.81 -0.22 -3.17 16 6 C 0.13 1.16 11.25 -16.56 -0.19 0.98 16 7 C -0.29 -2.99 6.13 -105.06 -0.64 -3.63 16 8 C 0.59 7.63 7.81 -12.52 -0.10 7.54 16 9 O -0.55 -9.22 16.90 5.28 0.09 -9.13 16 10 N -0.72 -8.05 5.44 -61.38 -0.33 -8.38 16 11 C 0.13 1.67 4.96 -4.04 -0.02 1.65 16 12 C -0.10 -1.32 2.89 -88.96 -0.26 -1.57 16 13 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.11 -1.59 6.19 -24.74 -0.15 -1.74 16 15 C -0.15 -2.48 6.54 -25.07 -0.16 -2.64 16 16 C 0.17 3.36 3.55 -66.81 -0.24 3.12 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 N -0.72 -17.84 5.08 -52.34 -0.27 -18.10 16 19 C -0.24 -6.57 9.96 -15.06 -0.15 -6.72 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.42 5.50 -17.42 -0.10 -0.52 16 22 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 23 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C -0.12 -1.91 6.14 -25.61 -0.16 -2.07 16 28 C 0.09 0.74 11.50 -16.98 -0.20 0.55 16 29 N -0.30 -2.85 12.33 30.86 0.38 -2.47 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.38 8.06 -51.93 -0.42 -0.03 16 37 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.40 3.33 7.39 -40.82 -0.30 3.03 16 39 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 43 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.38 10.15 7.52 -40.82 -0.31 9.85 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 1.27 7.31 -51.93 -0.38 0.89 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.19 1.07 7.50 -52.49 -0.39 0.68 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -34.96 408.08 -8.01 -42.97 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.09 Total: 7.83 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.05 Total: -2.56 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.28 Total: -59.69 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.29 Total: -12.13 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.96 -8.01 -42.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086864708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.853 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds