Wall clock time and date at job start Tue Mar 31 2020 19:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99919 * 2 1 4 4 C 1.53002 * 109.47075 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75612 * 125.00095 * 5 4 3 7 7 C 1.38044 * 107.41739 * 180.20936 * 6 5 4 8 8 C 1.47435 * 126.41140 * 179.73890 * 7 6 5 9 9 O 1.21596 * 119.99982 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99430 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99535 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47106 * 179.97438 * 11 10 8 13 13 H 1.09003 * 110.43091 * 307.54206 * 12 11 10 14 14 C 1.54890 * 110.48835 * 70.22126 * 12 11 10 15 15 C 1.54888 * 102.74896 * 156.61997 * 14 12 11 16 16 C 1.54263 * 104.19691 * 322.06087 * 15 14 12 17 17 H 1.08999 * 110.07111 * 142.91625 * 16 15 14 18 18 N 1.46502 * 110.03216 * 264.32532 * 16 15 14 19 19 C 1.36937 * 119.99552 * 272.16733 * 18 16 15 20 20 H 1.07996 * 120.00619 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99805 * 179.97438 * 19 18 16 22 22 N 1.31628 * 119.99666 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47298 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47195 * 120.00097 * 23 21 19 26 26 H 1.48503 * 109.46963 * 239.99916 * 23 21 19 27 27 C 1.53877 * 106.59953 * 23.60941 * 16 15 14 28 28 C 1.41293 * 107.17129 * 359.63934 * 7 6 5 29 29 N 1.30448 * 108.02045 * 0.36570 * 28 7 6 30 30 H 1.08994 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47270 * 300.00372 * 1 2 3 32 32 H 1.09000 * 109.47335 * 60.00536 * 1 2 3 33 33 H 1.09001 * 109.47318 * 59.99558 * 3 2 1 34 34 H 1.09003 * 109.46964 * 299.99714 * 3 2 1 35 35 H 1.09001 * 109.47171 * 59.99759 * 4 3 2 36 36 H 1.08993 * 109.47448 * 299.99359 * 4 3 2 37 37 H 1.08002 * 126.28609 * 359.93777 * 6 5 4 38 38 H 0.96994 * 120.00920 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.46509 * 299.99572 * 11 10 8 40 40 H 1.08993 * 109.47057 * 59.99647 * 11 10 8 41 41 H 1.09001 * 110.75566 * 274.93921 * 14 12 11 42 42 H 1.09003 * 110.75509 * 38.30483 * 14 12 11 43 43 H 1.09000 * 110.48506 * 203.37775 * 15 14 12 44 44 H 1.09005 * 110.59686 * 80.79517 * 15 14 12 45 45 H 0.96991 * 120.00133 * 92.16317 * 18 16 15 46 46 H 0.96998 * 119.99124 * 179.97438 * 22 21 19 47 47 H 1.09001 * 110.03076 * 240.71604 * 27 16 15 48 48 H 1.08993 * 110.03367 * 119.28574 * 27 16 15 49 49 H 1.07994 * 125.98632 * 180.11912 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9861 0.8926 7 6 5.3229 4.2859 0.5389 8 6 6.2528 5.1901 1.2398 9 8 6.8397 4.8074 2.2336 10 7 6.4523 6.4407 0.7788 11 6 7.3768 7.3391 1.4750 12 6 7.4203 8.6866 0.7517 13 1 7.6293 8.5429 -0.3084 14 6 6.0861 9.4492 0.9455 15 6 6.4995 10.9245 0.7181 16 6 7.8938 11.0314 1.3693 17 1 8.5326 11.6892 0.7799 18 7 7.7713 11.5442 2.7362 19 6 7.7744 12.8945 2.9636 20 1 7.8676 13.5815 2.1355 21 6 7.6578 13.3805 4.2587 22 7 7.5438 12.5433 5.2680 23 14 7.6627 15.2225 4.5691 24 1 7.8013 15.9418 3.2774 25 1 6.3884 15.6180 5.2211 26 1 8.8017 15.5720 5.4556 27 6 8.4793 9.6085 1.3907 28 6 4.5755 4.5866 -0.6219 29 7 3.8695 3.5342 -0.9312 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 5.4229 2.4431 1.7352 38 1 5.9845 6.7459 -0.0141 39 1 7.0367 7.4873 2.4999 40 1 8.3740 6.8991 1.4831 41 1 5.3507 9.1354 0.2047 42 1 5.7031 9.3068 1.9560 43 1 5.7965 11.5976 1.2089 44 1 6.5581 11.1464 -0.3475 45 1 7.6880 10.9273 3.4799 46 1 7.4627 12.8829 6.1729 47 1 8.6723 9.2996 2.4180 48 1 9.4017 9.5756 0.8109 49 1 4.5841 5.5247 -1.1568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086864708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:02 Heat of formation + Delta-G solvation = -28.245120 kcal Electronic energy + Delta-G solvation = -27807.989347 eV Core-core repulsion = 23770.717997 eV Total energy + Delta-G solvation = -4037.271351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.42770 -40.42579 -39.30371 -38.97303 -36.22208 -35.10147 -34.73549 -32.50741 -31.52587 -30.71731 -29.83077 -28.73750 -27.28989 -25.90615 -25.01657 -24.43344 -23.46593 -21.73795 -21.35336 -20.89957 -20.50620 -19.16145 -18.91299 -17.69005 -17.37013 -17.19548 -16.68147 -16.63773 -16.41486 -16.32216 -16.00915 -15.65557 -15.50942 -15.15249 -15.04882 -14.63697 -14.47433 -14.19319 -14.15101 -13.80244 -13.47615 -13.11196 -13.04557 -12.96208 -12.73216 -12.46428 -12.37372 -12.31752 -12.09450 -12.07502 -11.85327 -11.64652 -11.57785 -11.45226 -11.35182 -10.91258 -10.87048 -10.79370 -10.64970 -10.12681 -9.66004 -8.93505 -7.91399 -5.18490 0.48763 1.14236 1.19104 1.47609 1.48119 1.58164 2.33968 2.49142 2.58536 2.71965 3.40947 3.49860 3.73085 3.78281 3.83799 3.84709 3.88084 3.90863 4.11954 4.18442 4.25807 4.29038 4.44075 4.47591 4.49087 4.59958 4.61914 4.64398 4.67298 4.73077 4.75531 4.82116 4.85373 4.91009 5.02837 5.13942 5.20538 5.27761 5.38426 5.46921 5.50358 5.55755 5.64495 5.71793 5.74688 6.00789 6.32497 6.46307 6.69753 7.35426 7.36928 8.17990 8.38372 9.32575 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.001651 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.322330 B =16957.182815 C =17281.477285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.136 3.864 7 C -0.311 4.311 8 C 0.591 3.409 9 O -0.598 6.598 10 N -0.708 5.708 11 C 0.136 3.864 12 C -0.083 4.083 13 H 0.112 0.888 14 C -0.106 4.106 15 C -0.139 4.139 16 C 0.160 3.840 17 H 0.044 0.956 18 N -0.735 5.735 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.296 1.296 26 H -0.296 1.296 27 C -0.117 4.117 28 C 0.093 3.907 29 N -0.319 5.319 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.206 0.794 38 H 0.414 0.586 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.370 0.630 46 H 0.248 0.752 47 H 0.049 0.951 48 H 0.082 0.918 49 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -25.943 -17.497 33.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.016 4.016 7 C -0.326 4.326 8 C 0.379 3.621 9 O -0.480 6.480 10 N -0.359 5.359 11 C 0.012 3.988 12 C -0.102 4.102 13 H 0.130 0.870 14 C -0.143 4.143 15 C -0.179 4.179 16 C 0.052 3.948 17 H 0.062 0.938 18 N -0.375 5.375 19 C -0.366 4.366 20 H 0.094 0.906 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.224 1.224 26 H -0.223 1.223 27 C -0.156 4.156 28 C -0.095 4.095 29 N -0.138 5.138 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.222 0.778 38 H 0.252 0.748 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.606 -26.830 -17.703 34.175 hybrid contribution 0.165 1.739 1.430 2.258 sum -11.441 -25.091 -16.272 32.019 Atomic orbital electron populations 1.22966 0.78729 1.04284 1.00913 1.87750 1.21953 1.26996 1.95674 1.22558 0.92733 0.85278 1.01598 1.21731 0.92406 0.77569 1.07293 1.48491 1.32503 1.12538 1.20219 1.23328 0.90043 0.94099 0.94087 1.20207 1.11441 0.96702 1.04261 1.17550 0.80260 0.81562 0.82681 1.90763 1.52056 1.76853 1.28308 1.45590 1.46221 1.12286 1.31795 1.21272 0.93030 0.89122 0.95357 1.22108 0.95387 0.91746 1.00920 0.86974 1.22444 0.96750 0.94314 1.00817 1.22952 0.98124 0.96738 1.00115 1.21162 0.94702 0.93609 0.85332 0.93796 1.42781 1.87598 1.03546 1.03549 1.19707 1.39570 0.85016 0.92329 0.90618 1.25537 1.04255 1.01713 0.95707 1.69843 1.59559 1.34456 0.98501 0.85111 0.76469 0.80644 0.77807 1.18888 1.22371 1.22297 1.22379 0.98680 0.93916 1.00632 1.24541 0.92214 0.98589 0.94163 1.77144 1.24926 0.97496 1.14253 0.87769 0.93285 0.93221 0.92810 0.92312 0.87530 0.85018 0.77771 0.74839 0.93919 0.91858 0.89206 0.94196 0.94457 0.90264 0.79837 0.94279 0.93236 0.89947 0.76394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -4.95 10.70 -148.98 -1.59 -6.54 16 3 C 0.06 0.62 6.11 71.98 0.44 1.06 16 4 C 0.13 1.21 6.86 86.38 0.59 1.81 16 5 N -0.36 -5.21 3.65 -346.30 -1.26 -6.47 16 6 C 0.14 2.21 11.25 84.27 0.95 3.16 16 7 C -0.31 -5.97 6.13 -20.15 -0.12 -6.09 16 8 C 0.59 14.72 7.81 86.67 0.68 15.40 16 9 O -0.60 -20.20 16.90 -4.02 -0.07 -20.27 16 10 N -0.71 -14.45 5.44 -466.37 -2.54 -16.98 16 11 C 0.14 3.41 4.96 86.38 0.43 3.84 16 12 C -0.08 -1.90 2.89 -9.72 -0.03 -1.93 16 13 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 14 C -0.11 -2.77 6.19 31.88 0.20 -2.57 16 15 C -0.14 -4.49 6.54 31.67 0.21 -4.29 16 16 C 0.16 6.08 3.55 45.71 0.16 6.25 16 17 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 18 N -0.73 -37.17 5.08 -319.51 -1.62 -38.79 16 19 C -0.23 -13.09 9.96 84.03 0.84 -12.26 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 22 N -0.97 -60.87 13.06 21.65 0.28 -60.58 16 23 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 27 C -0.12 -3.57 6.14 31.32 0.19 -3.38 16 28 C 0.09 1.40 11.50 85.65 0.99 2.39 16 29 N -0.32 -5.50 12.33 -56.28 -0.69 -6.19 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.13 0.64 8.06 -2.39 -0.02 0.62 16 37 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.41 5.51 7.39 -92.71 -0.69 4.82 16 39 H 0.04 1.34 8.02 -2.39 -0.02 1.32 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.04 1.29 7.97 -2.39 -0.02 1.27 16 43 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 44 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.37 20.44 7.52 -92.71 -0.70 19.74 16 46 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 47 H 0.05 1.75 7.31 -2.39 -0.02 1.74 16 48 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.22 1.68 7.50 -2.91 -0.02 1.66 16 Total: -1.00 -78.34 408.08 1.33 -77.00 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.43 Total: 29.31 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 7.23 Total: 0.63 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -5.83 Total: -129.02 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.66 Total: -26.81 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.34 1.33 -77.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086864708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.760 kcal (2) G-P(sol) polarization free energy of solvation -78.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds