Wall clock time and date at job start Tue Mar 31 2020 20:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47394 * 2 1 4 4 H 1.08999 * 109.99245 * 304.65782 * 3 2 1 5 5 C 1.54334 * 109.99242 * 183.61645 * 3 2 1 6 6 H 1.08998 * 110.66518 * 337.04498 * 5 3 2 7 7 N 1.46503 * 110.84890 * 100.19814 * 5 3 2 8 8 C 1.34771 * 119.99779 * 200.14806 * 7 5 3 9 9 O 1.21538 * 120.00191 * 359.97438 * 8 7 5 10 10 C 1.48002 * 119.99863 * 179.97438 * 8 7 5 11 11 N 1.34192 * 126.70193 * 0.02562 * 10 8 7 12 12 N 1.28977 * 107.25464 * 179.97438 * 11 10 8 13 13 N 1.28719 * 108.99142 * 0.02562 * 12 11 10 14 14 C 1.46498 * 125.32037 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47278 * 359.97257 * 14 13 12 16 16 C 1.53000 * 109.47180 * 119.97666 * 14 13 12 17 17 C 1.53003 * 109.47161 * 239.97012 * 14 13 12 18 18 N 1.28875 * 109.35683 * 359.72366 * 13 12 11 19 19 C 1.55155 * 103.01917 * 218.66384 * 5 3 2 20 20 C 1.54911 * 101.58327 * 35.30818 * 19 5 3 21 21 N 1.47026 * 109.88027 * 65.74725 * 3 2 1 22 22 C 1.36929 * 125.64924 * 298.39674 * 21 3 2 23 23 H 1.07997 * 120.00430 * 333.64765 * 22 21 3 24 24 C 1.38815 * 120.00012 * 153.65131 * 22 21 3 25 25 N 1.31620 * 119.99847 * 334.80570 * 24 22 21 26 26 Si 1.86799 * 120.00161 * 154.80288 * 24 22 21 27 27 H 1.48498 * 109.47290 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47334 * 240.00113 * 26 24 22 29 29 H 1.48501 * 109.47137 * 120.00401 * 26 24 22 30 30 H 1.08996 * 109.46916 * 51.75696 * 1 2 3 31 31 H 1.08994 * 109.47271 * 171.76568 * 1 2 3 32 32 H 1.09001 * 109.46629 * 291.76051 * 1 2 3 33 33 H 1.08993 * 109.46977 * 239.99585 * 2 1 3 34 34 H 1.09006 * 109.47269 * 120.00007 * 2 1 3 35 35 H 0.97001 * 119.99999 * 20.13693 * 7 5 3 36 36 H 1.08998 * 109.46854 * 60.00318 * 15 14 13 37 37 H 1.09006 * 109.46684 * 180.02562 * 15 14 13 38 38 H 1.08997 * 109.47079 * 299.99778 * 15 14 13 39 39 H 1.09001 * 109.47318 * 59.99594 * 16 14 13 40 40 H 1.08990 * 109.47375 * 179.97438 * 16 14 13 41 41 H 1.09008 * 109.47176 * 299.99821 * 16 14 13 42 42 H 1.09006 * 109.46908 * 60.00333 * 17 14 13 43 43 H 1.08993 * 109.47713 * 180.02562 * 17 14 13 44 44 H 1.09001 * 109.47207 * 300.00326 * 17 14 13 45 45 H 1.09000 * 111.00669 * 277.23468 * 19 5 3 46 46 H 1.09000 * 111.00229 * 153.38254 * 19 5 3 47 47 H 1.08997 * 110.36864 * 204.15243 * 20 19 5 48 48 H 1.09003 * 110.46006 * 81.87797 * 20 19 5 49 49 H 0.97002 * 120.00477 * 353.73591 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6151 1.9880 -0.8426 5 6 3.5806 1.4574 -0.0915 6 1 3.9961 0.5140 0.2624 7 7 4.0189 1.7332 -1.4619 8 6 5.2652 1.3987 -1.8510 9 8 6.0256 0.8688 -1.0648 10 6 5.7078 1.6767 -3.2356 11 7 4.9848 2.2528 -4.2083 12 7 5.7330 2.3119 -5.2572 13 7 6.8818 1.8009 -4.9817 14 6 8.0037 1.6854 -5.9166 15 6 7.5990 2.2660 -7.2731 16 6 9.2054 2.4581 -5.3692 17 6 8.3785 0.2115 -6.0840 18 7 6.8925 1.4114 -3.7532 19 6 3.9758 2.6210 0.8558 20 6 2.9044 2.4945 1.9675 21 7 1.6713 2.1032 1.2606 22 6 0.3942 2.3148 1.7069 23 1 -0.4186 2.3945 1.0002 24 6 0.1441 2.4270 3.0677 25 7 0.9590 1.8649 3.9351 26 14 -1.3488 3.3759 3.6679 27 1 -2.0996 3.9067 2.5019 28 1 -0.9062 4.5032 4.5272 29 1 -2.2278 2.4714 4.4520 30 1 -0.3633 0.6361 -0.8071 31 1 -0.3633 -1.0170 -0.1472 32 1 -0.3632 0.3810 0.9545 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.4121 2.1563 -2.0894 36 1 7.3321 3.3160 -7.1538 37 1 8.4337 2.1796 -7.9688 38 1 6.7429 1.7154 -7.6631 39 1 9.4937 2.0445 -4.4028 40 1 10.0402 2.3719 -6.0645 41 1 8.9384 3.5083 -5.2499 42 1 7.5224 -0.3391 -6.4740 43 1 9.2135 0.1255 -6.7792 44 1 8.6668 -0.2021 -5.1176 45 1 3.8994 3.5820 0.3472 46 1 4.9773 2.4730 1.2597 47 1 2.7657 3.4510 2.4713 48 1 3.1899 1.7261 2.6861 49 1 1.6815 1.2971 3.6244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087581001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:13 Heat of formation + Delta-G solvation = 108.667528 kcal Electronic energy + Delta-G solvation = -29742.479392 eV Core-core repulsion = 25743.437770 eV Total energy + Delta-G solvation = -3999.041622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.64612 -39.82253 -38.16170 -37.77884 -34.43486 -33.68883 -32.81809 -32.52425 -31.80367 -28.73855 -28.20459 -28.16031 -27.11724 -25.45786 -24.73666 -24.08768 -21.88273 -21.26213 -20.95054 -20.27959 -19.63184 -18.02902 -17.63218 -17.33547 -16.99686 -16.24943 -15.07980 -14.93063 -14.73426 -14.53341 -14.31023 -14.20066 -13.87498 -13.58315 -13.49427 -13.15894 -13.08162 -12.97390 -12.88277 -12.48114 -12.45362 -12.38137 -12.18577 -12.08860 -11.74029 -11.63990 -11.27847 -11.22840 -11.07515 -10.93572 -10.74551 -10.58951 -10.50441 -10.34322 -10.12330 -10.10214 -10.02990 -9.82910 -9.41553 -8.85556 -8.37483 -6.89013 -6.03344 -3.20308 0.82111 1.31371 1.38620 2.77031 3.07369 3.52348 3.55076 3.61649 3.68012 3.90445 3.90763 4.02140 4.37526 4.59280 4.80839 4.83050 4.83757 4.99694 5.01735 5.04259 5.05126 5.14326 5.30933 5.31967 5.35701 5.42222 5.43894 5.48197 5.60463 5.68785 5.84782 5.94543 5.99526 6.03107 6.17525 6.26898 6.36405 6.49237 6.60483 6.67041 6.77241 6.96036 7.04998 7.11774 7.36045 7.44055 7.89366 7.96702 8.11668 8.51659 9.03589 9.81031 10.39314 11.24437 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.002313 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.931250 B =12101.839747 C =12270.939905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.041 0.959 5 C 0.136 3.864 6 H 0.097 0.903 7 N -0.690 5.690 8 C 0.614 3.386 9 O -0.510 6.510 10 C 0.130 3.870 11 N -0.256 5.256 12 N -0.056 5.056 13 N -0.127 5.127 14 C 0.176 3.824 15 C -0.153 4.153 16 C -0.161 4.161 17 C -0.161 4.161 18 N -0.246 5.246 19 C -0.145 4.145 20 C 0.144 3.856 21 N -0.589 5.589 22 C -0.324 4.324 23 H 0.064 0.936 24 C -0.024 4.024 25 N -0.914 5.914 26 Si 1.069 2.931 27 H -0.292 1.292 28 H -0.291 1.291 29 H -0.295 1.295 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.052 0.948 48 H 0.031 0.969 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.550 -0.506 -22.607 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.058 0.942 5 C 0.032 3.968 6 H 0.115 0.885 7 N -0.341 5.341 8 C 0.394 3.606 9 O -0.382 6.382 10 C -0.154 4.154 11 N -0.130 5.130 12 N -0.049 5.049 13 N -0.041 5.041 14 C 0.096 3.904 15 C -0.211 4.211 16 C -0.219 4.219 17 C -0.219 4.219 18 N -0.099 5.099 19 C -0.185 4.185 20 C 0.018 3.982 21 N -0.315 5.315 22 C -0.452 4.452 23 H 0.082 0.918 24 C -0.227 4.227 25 N -0.554 5.554 26 Si 0.899 3.101 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.222 1.222 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.245 0.755 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.182 -0.114 -21.225 26.096 hybrid contribution 0.552 -0.600 -1.307 1.540 sum 15.734 -0.713 -22.532 27.491 Atomic orbital electron populations 1.21887 0.95565 0.98895 1.04252 1.21888 0.97185 0.97459 0.99729 1.21206 0.89159 0.92555 0.92161 0.94185 1.22254 0.96077 0.99487 0.79006 0.88466 1.45796 1.12825 1.60767 1.14713 1.16102 0.82897 0.79539 0.82101 1.90850 1.53388 1.42196 1.51762 1.25423 0.88398 1.02994 0.98582 1.76158 1.24402 1.16328 0.96134 1.78872 0.91417 1.14085 1.20523 1.50757 1.11810 1.34563 1.07002 1.21523 0.82013 0.99554 0.87319 1.22111 1.03602 1.02806 0.92605 1.22266 0.95677 1.00547 1.03425 1.22265 1.03312 0.91670 1.04654 1.74992 1.21983 1.18596 0.94323 1.23222 0.99598 0.97699 0.97935 1.21554 0.85207 0.98759 0.92699 1.44513 1.01945 1.65353 1.19718 1.19651 0.83753 1.49118 0.92654 0.91808 1.25832 1.03965 1.00565 0.92362 1.70699 1.19109 1.29155 1.36456 0.83476 0.75079 0.76379 0.75188 1.21778 1.21737 1.22185 0.94208 0.95206 0.88948 0.94230 0.92484 0.75480 0.90452 0.89058 0.90461 0.90162 0.88929 0.91242 0.91248 0.88925 0.90174 0.91368 0.91321 0.93010 0.95113 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.98 37.16 0.33 -2.60 16 2 C -0.12 -2.39 5.47 -26.73 -0.15 -2.53 16 3 C 0.16 3.13 3.00 -66.94 -0.20 2.93 16 4 H 0.04 0.80 7.69 -51.93 -0.40 0.40 16 5 C 0.14 2.45 2.76 -66.09 -0.18 2.27 16 6 H 0.10 1.85 7.40 -51.93 -0.38 1.47 16 7 N -0.69 -10.87 5.20 -52.92 -0.28 -11.14 16 8 C 0.61 10.18 7.83 -12.26 -0.10 10.09 16 9 O -0.51 -9.85 16.82 5.33 0.09 -9.76 16 10 C 0.13 1.96 8.14 -156.24 -1.27 0.69 16 11 N -0.26 -3.65 12.26 32.10 0.39 -3.25 16 12 N -0.06 -0.70 12.21 60.35 0.74 0.04 16 13 N -0.13 -1.39 3.72 0.52 0.00 -1.38 16 14 C 0.18 1.13 1.30 -131.82 -0.17 0.96 16 15 C -0.15 -0.66 7.90 37.16 0.29 -0.37 16 16 C -0.16 -0.82 8.66 37.16 0.32 -0.50 16 17 C -0.16 -0.82 8.66 37.16 0.32 -0.49 16 18 N -0.25 -3.38 11.85 32.11 0.38 -3.00 16 19 C -0.15 -2.73 6.77 -24.58 -0.17 -2.89 16 20 C 0.14 3.27 5.57 -2.53 -0.01 3.26 16 21 N -0.59 -14.08 2.92 -162.56 -0.47 -14.56 16 22 C -0.32 -8.54 7.22 -15.06 -0.11 -8.65 16 23 H 0.06 1.70 7.25 -52.49 -0.38 1.32 16 24 C -0.02 -0.67 5.17 -17.43 -0.09 -0.76 16 25 N -0.91 -26.89 13.05 55.49 0.72 -26.17 16 26 Si 1.07 24.98 29.99 -169.99 -5.10 19.88 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 2.13 5.53 -51.93 -0.29 1.84 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.41 5.85 8.07 -40.82 -0.33 5.52 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.03 0.76 6.72 -51.93 -0.35 0.41 16 49 H 0.27 8.01 6.20 -40.82 -0.25 7.76 16 LS Contribution 395.88 15.07 5.97 5.97 Total: -1.00 -32.33 395.88 -6.67 -39.00 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.94 Total: 3.01 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.18 Total: 1.38 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 1.49 Total: -59.47 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.10 Total: 19.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.33 -6.67 -39.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087581001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.668 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds