Wall clock time and date at job start Tue Mar 31 2020 20:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47394 * 2 1 4 4 H 1.08999 * 109.99245 * 304.65782 * 3 2 1 5 5 C 1.54334 * 109.99242 * 183.61645 * 3 2 1 6 6 H 1.08998 * 110.66518 * 337.04498 * 5 3 2 7 7 N 1.46503 * 110.84890 * 100.19814 * 5 3 2 8 8 C 1.34771 * 119.99779 * 200.14806 * 7 5 3 9 9 O 1.21538 * 120.00191 * 359.97438 * 8 7 5 10 10 C 1.48002 * 119.99863 * 179.97438 * 8 7 5 11 11 N 1.34192 * 126.70193 * 0.02562 * 10 8 7 12 12 N 1.28977 * 107.25464 * 179.97438 * 11 10 8 13 13 N 1.28719 * 108.99142 * 0.02562 * 12 11 10 14 14 C 1.46498 * 125.32037 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47278 * 359.97257 * 14 13 12 16 16 C 1.53000 * 109.47180 * 119.97666 * 14 13 12 17 17 C 1.53003 * 109.47161 * 239.97012 * 14 13 12 18 18 N 1.28875 * 109.35683 * 359.72366 * 13 12 11 19 19 C 1.55155 * 103.01917 * 218.66384 * 5 3 2 20 20 C 1.54911 * 101.58327 * 35.30818 * 19 5 3 21 21 N 1.47026 * 109.88027 * 65.74725 * 3 2 1 22 22 C 1.36929 * 125.64924 * 298.39674 * 21 3 2 23 23 H 1.07997 * 120.00430 * 333.64765 * 22 21 3 24 24 C 1.38815 * 120.00012 * 153.65131 * 22 21 3 25 25 N 1.31620 * 119.99847 * 334.80570 * 24 22 21 26 26 Si 1.86799 * 120.00161 * 154.80288 * 24 22 21 27 27 H 1.48498 * 109.47290 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47334 * 240.00113 * 26 24 22 29 29 H 1.48501 * 109.47137 * 120.00401 * 26 24 22 30 30 H 1.08996 * 109.46916 * 51.75696 * 1 2 3 31 31 H 1.08994 * 109.47271 * 171.76568 * 1 2 3 32 32 H 1.09001 * 109.46629 * 291.76051 * 1 2 3 33 33 H 1.08993 * 109.46977 * 239.99585 * 2 1 3 34 34 H 1.09006 * 109.47269 * 120.00007 * 2 1 3 35 35 H 0.97001 * 119.99999 * 20.13693 * 7 5 3 36 36 H 1.08998 * 109.46854 * 60.00318 * 15 14 13 37 37 H 1.09006 * 109.46684 * 180.02562 * 15 14 13 38 38 H 1.08997 * 109.47079 * 299.99778 * 15 14 13 39 39 H 1.09001 * 109.47318 * 59.99594 * 16 14 13 40 40 H 1.08990 * 109.47375 * 179.97438 * 16 14 13 41 41 H 1.09008 * 109.47176 * 299.99821 * 16 14 13 42 42 H 1.09006 * 109.46908 * 60.00333 * 17 14 13 43 43 H 1.08993 * 109.47713 * 180.02562 * 17 14 13 44 44 H 1.09001 * 109.47207 * 300.00326 * 17 14 13 45 45 H 1.09000 * 111.00669 * 277.23468 * 19 5 3 46 46 H 1.09000 * 111.00229 * 153.38254 * 19 5 3 47 47 H 1.08997 * 110.36864 * 204.15243 * 20 19 5 48 48 H 1.09003 * 110.46006 * 81.87797 * 20 19 5 49 49 H 0.97002 * 120.00477 * 353.73591 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6151 1.9880 -0.8426 5 6 3.5806 1.4574 -0.0915 6 1 3.9961 0.5140 0.2624 7 7 4.0189 1.7332 -1.4619 8 6 5.2652 1.3987 -1.8510 9 8 6.0256 0.8688 -1.0648 10 6 5.7078 1.6767 -3.2356 11 7 4.9848 2.2528 -4.2083 12 7 5.7330 2.3119 -5.2572 13 7 6.8818 1.8009 -4.9817 14 6 8.0037 1.6854 -5.9166 15 6 7.5990 2.2660 -7.2731 16 6 9.2054 2.4581 -5.3692 17 6 8.3785 0.2115 -6.0840 18 7 6.8925 1.4114 -3.7532 19 6 3.9758 2.6210 0.8558 20 6 2.9044 2.4945 1.9675 21 7 1.6713 2.1032 1.2606 22 6 0.3942 2.3148 1.7069 23 1 -0.4186 2.3945 1.0002 24 6 0.1441 2.4270 3.0677 25 7 0.9590 1.8649 3.9351 26 14 -1.3488 3.3759 3.6679 27 1 -2.0996 3.9067 2.5019 28 1 -0.9062 4.5032 4.5272 29 1 -2.2278 2.4714 4.4520 30 1 -0.3633 0.6361 -0.8071 31 1 -0.3633 -1.0170 -0.1472 32 1 -0.3632 0.3810 0.9545 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.4121 2.1563 -2.0894 36 1 7.3321 3.3160 -7.1538 37 1 8.4337 2.1796 -7.9688 38 1 6.7429 1.7154 -7.6631 39 1 9.4937 2.0445 -4.4028 40 1 10.0402 2.3719 -6.0645 41 1 8.9384 3.5083 -5.2499 42 1 7.5224 -0.3391 -6.4740 43 1 9.2135 0.1255 -6.7792 44 1 8.6668 -0.2021 -5.1176 45 1 3.8994 3.5820 0.3472 46 1 4.9773 2.4730 1.2597 47 1 2.7657 3.4510 2.4713 48 1 3.1899 1.7261 2.6861 49 1 1.6815 1.2971 3.6244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087581001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:12 Heat of formation + Delta-G solvation = 86.944942 kcal Electronic energy + Delta-G solvation = -29743.421354 eV Core-core repulsion = 25743.437770 eV Total energy + Delta-G solvation = -3999.983584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.63975 -41.24969 -39.55626 -38.62357 -35.98231 -34.73045 -34.34549 -33.92962 -33.31000 -30.53510 -28.84843 -28.54632 -28.49904 -26.87307 -25.77814 -25.62127 -23.55847 -22.60192 -21.96124 -21.70720 -21.26194 -19.37637 -19.09172 -18.58775 -17.77776 -17.74532 -16.45284 -16.24781 -16.01406 -15.64291 -15.34084 -15.28293 -15.18643 -15.13341 -14.91845 -14.62424 -14.09017 -14.01845 -13.79658 -13.49193 -13.36601 -13.30810 -13.23773 -12.85608 -12.83239 -12.69871 -12.65276 -12.56195 -12.38960 -12.20588 -12.13864 -12.12876 -11.90529 -11.85147 -11.76424 -11.63070 -11.53170 -11.50519 -11.37361 -10.43280 -10.30065 -8.91099 -8.15911 -5.30750 -0.20962 0.20772 0.59847 1.56190 1.62177 1.69176 1.80582 1.84217 2.64897 2.74034 2.90368 3.27901 3.44777 3.47369 3.56465 3.63166 3.68072 3.72860 3.93643 4.07764 4.26388 4.27925 4.38196 4.39477 4.42252 4.51746 4.56584 4.57833 4.59601 4.65347 4.72146 4.72354 4.81921 4.92071 4.98417 5.01438 5.06936 5.10256 5.11519 5.15924 5.20724 5.21491 5.28400 5.48507 5.66309 5.86382 6.13652 6.41622 6.74824 6.97949 6.99864 7.76286 8.37293 9.10387 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.002313 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.931250 B =12101.839747 C =12270.939905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.053 0.947 5 C 0.151 3.849 6 H 0.089 0.911 7 N -0.678 5.678 8 C 0.621 3.379 9 O -0.541 6.541 10 C 0.115 3.885 11 N -0.267 5.267 12 N -0.056 5.056 13 N -0.108 5.108 14 C 0.159 3.841 15 C -0.150 4.150 16 C -0.158 4.158 17 C -0.158 4.158 18 N -0.255 5.255 19 C -0.130 4.130 20 C 0.148 3.852 21 N -0.606 5.606 22 C -0.310 4.310 23 H 0.064 0.936 24 C -0.080 4.080 25 N -0.949 5.949 26 Si 1.114 2.886 27 H -0.270 1.270 28 H -0.293 1.293 29 H -0.295 1.295 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.419 0.581 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.130 0.870 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.130 0.870 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.027 0.973 48 H 0.008 0.992 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.515 -0.204 -26.040 30.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.049 3.951 4 H 0.070 0.930 5 C 0.046 3.954 6 H 0.107 0.893 7 N -0.330 5.330 8 C 0.402 3.598 9 O -0.415 6.415 10 C -0.169 4.169 11 N -0.141 5.141 12 N -0.048 5.048 13 N -0.025 5.025 14 C 0.080 3.920 15 C -0.208 4.208 16 C -0.216 4.216 17 C -0.216 4.216 18 N -0.110 5.110 19 C -0.169 4.169 20 C 0.022 3.978 21 N -0.332 5.332 22 C -0.439 4.439 23 H 0.081 0.919 24 C -0.276 4.276 25 N -0.592 5.592 26 Si 0.940 3.060 27 H -0.195 1.195 28 H -0.220 1.220 29 H -0.222 1.222 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.257 0.743 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.148 0.852 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.046 0.954 48 H 0.025 0.975 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.135 0.201 -24.727 29.526 hybrid contribution 0.375 -0.731 -0.435 0.930 sum 16.510 -0.530 -25.163 30.100 Atomic orbital electron populations 1.21768 0.95554 1.00256 1.02411 1.21830 0.97116 0.96911 1.00011 1.21308 0.90522 0.92784 0.90528 0.92984 1.21893 0.94628 0.98762 0.80069 0.89263 1.45551 1.12963 1.60661 1.13814 1.16171 0.82482 0.78645 0.82523 1.90835 1.54190 1.43557 1.52881 1.25023 0.89167 1.04542 0.98118 1.76124 1.25000 1.16696 0.96259 1.78807 0.91895 1.14207 1.19905 1.51354 1.12198 1.32424 1.06536 1.22246 0.81229 1.01000 0.87486 1.22185 1.04884 1.01946 0.91769 1.22316 0.96150 0.99587 1.03575 1.22316 1.04378 0.90247 1.04661 1.74959 1.21597 1.18842 0.95558 1.23077 0.98552 0.98627 0.96657 1.21398 0.86246 0.96635 0.93485 1.44713 1.01611 1.66176 1.20669 1.19818 0.84737 1.46882 0.92509 0.91864 1.27033 1.05933 1.01515 0.93158 1.70816 1.20235 1.31214 1.36889 0.82859 0.72646 0.75118 0.75387 1.19519 1.22005 1.22222 0.93120 0.93081 0.92708 0.91328 0.94683 0.74301 0.91154 0.85391 0.91108 0.91854 0.85181 0.91962 0.91903 0.85183 0.91857 0.90233 0.90394 0.95432 0.97455 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.98 71.98 0.65 -4.81 16 2 C -0.12 -4.53 5.47 30.60 0.17 -4.36 16 3 C 0.16 6.08 3.00 45.35 0.14 6.22 16 4 H 0.05 1.96 7.69 -2.39 -0.02 1.95 16 5 C 0.15 5.36 2.76 46.18 0.13 5.49 16 6 H 0.09 3.38 7.40 -2.39 -0.02 3.36 16 7 N -0.68 -20.52 5.20 -439.62 -2.29 -22.80 16 8 C 0.62 20.12 7.83 86.83 0.68 20.80 16 9 O -0.54 -20.72 16.82 -3.84 -0.06 -20.79 16 10 C 0.12 3.37 8.14 137.15 1.12 4.48 16 11 N -0.27 -7.29 12.26 -52.36 -0.64 -7.93 16 12 N -0.06 -1.31 12.21 37.02 0.45 -0.86 16 13 N -0.11 -2.22 3.72 -152.26 -0.57 -2.79 16 14 C 0.16 1.65 1.30 3.60 0.00 1.65 16 15 C -0.15 -0.85 7.90 71.98 0.57 -0.28 16 16 C -0.16 -1.23 8.66 71.98 0.62 -0.61 16 17 C -0.16 -1.20 8.66 71.98 0.62 -0.58 16 18 N -0.26 -6.82 11.85 -52.31 -0.62 -7.44 16 19 C -0.13 -4.85 6.77 31.99 0.22 -4.63 16 20 C 0.15 6.97 5.57 86.86 0.48 7.45 16 21 N -0.61 -29.32 2.92 -668.22 -1.95 -31.27 16 22 C -0.31 -16.57 7.22 84.04 0.61 -15.96 16 23 H 0.06 3.35 7.25 -2.91 -0.02 3.33 16 24 C -0.08 -4.49 5.17 84.86 0.44 -4.05 16 25 N -0.95 -57.87 13.05 21.65 0.28 -57.59 16 26 Si 1.11 51.06 29.99 68.60 2.06 53.11 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 29 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 30 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 2.52 5.53 -2.39 -0.01 2.51 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.42 11.23 8.07 -92.71 -0.75 10.48 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.13 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.01 0.39 6.72 -2.39 -0.02 0.38 16 49 H 0.26 15.90 6.20 -92.71 -0.57 15.32 16 Total: -1.00 -72.37 395.88 3.50 -68.87 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.40 Total: 18.66 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.44 Total: 10.82 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -5.33 Total: -130.67 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.06 Total: 53.11 kcal Total: -72.37 3.50 -68.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087581001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.816 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds