Wall clock time and date at job start Tue Mar 31 2020 21:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87489 * 2 1 4 4 C 1.54322 * 110.01139 * 238.90192 * 2 1 3 5 5 H 1.09006 * 110.71959 * 336.67661 * 4 2 1 6 6 N 1.46498 * 110.72056 * 99.77624 * 4 2 1 7 7 C 1.34773 * 119.99897 * 205.00000 * 6 4 2 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 4 10 10 C 1.50694 * 109.47496 * 180.02562 * 9 7 6 11 11 N 1.33327 * 126.54655 * 269.68683 * 10 9 7 12 12 N 1.29003 * 107.34983 * 179.83456 * 11 10 9 13 13 N 1.28782 * 108.72593 * 0.43080 * 12 11 10 14 14 C 1.46500 * 125.44502 * 179.72911 * 13 12 11 15 15 C 1.53002 * 109.47108 * 239.99927 * 14 13 12 16 16 C 1.52999 * 109.47248 * 359.97438 * 14 13 12 17 17 C 1.53002 * 109.47151 * 119.99764 * 14 13 12 18 18 N 1.28883 * 109.10377 * 359.72255 * 13 12 11 19 19 C 1.55282 * 103.00430 * 218.39875 * 4 2 1 20 20 C 1.54905 * 101.53029 * 35.35966 * 19 4 2 21 21 N 1.47023 * 109.88034 * 121.01704 * 2 1 3 22 22 C 1.36943 * 125.64628 * 298.52844 * 21 2 1 23 23 H 1.07999 * 119.99997 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99832 * 180.02562 * 22 21 2 25 25 N 1.31616 * 120.00113 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99740 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47632 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47079 * 120.00342 * 26 24 22 29 29 H 1.48506 * 109.47094 * 240.00015 * 26 24 22 30 30 H 1.09008 * 109.47282 * 300.43758 * 1 2 3 31 31 H 1.09003 * 109.47218 * 60.43851 * 1 2 3 32 32 H 1.09004 * 109.47562 * 180.44055 * 1 2 3 33 33 H 0.96997 * 120.00355 * 25.00009 * 6 4 2 34 34 H 1.09011 * 109.46606 * 299.99832 * 9 7 6 35 35 H 1.08995 * 109.47398 * 59.99178 * 9 7 6 36 36 H 1.08995 * 109.46987 * 59.99733 * 15 14 13 37 37 H 1.08996 * 109.47209 * 180.02562 * 15 14 13 38 38 H 1.09003 * 109.46883 * 299.99772 * 15 14 13 39 39 H 1.09005 * 109.47225 * 59.99801 * 16 14 13 40 40 H 1.08999 * 109.47485 * 180.02562 * 16 14 13 41 41 H 1.09008 * 109.47188 * 300.00084 * 16 14 13 42 42 H 1.08993 * 109.47188 * 60.00033 * 17 14 13 43 43 H 1.08999 * 109.46955 * 180.02562 * 17 14 13 44 44 H 1.08999 * 109.47255 * 299.99668 * 17 14 13 45 45 H 1.09001 * 110.95548 * 277.33125 * 19 4 2 46 46 H 1.08996 * 111.09853 * 153.45188 * 19 4 2 47 47 H 1.09002 * 110.36692 * 204.23391 * 20 19 4 48 48 H 1.08995 * 110.36664 * 82.02192 * 20 19 4 49 49 H 0.97000 * 120.00077 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3103 -1.4473 -1.6178 6 7 2.4541 0.1969 -2.2880 7 6 2.4583 -0.1895 -3.5791 8 8 2.1348 -1.3204 -3.8747 9 6 2.8662 0.7832 -4.6554 10 6 2.7847 0.1079 -6.0001 11 7 3.7616 -0.5613 -6.6129 12 7 3.2908 -0.9862 -7.7363 13 7 2.0674 -0.5989 -7.8449 14 6 1.1865 -0.8754 -8.9823 15 6 0.7300 0.4448 -9.6066 16 6 1.9446 -1.6974 -10.0265 17 6 -0.0349 -1.6618 -8.5021 18 7 1.7420 0.0708 -6.7928 19 6 3.2918 -1.5137 -0.6899 20 6 2.8176 -1.8763 0.7395 21 7 2.0300 -0.7124 1.1849 22 6 1.8015 -0.3544 2.4868 23 1 1.2078 0.5197 2.7103 24 6 2.3331 -1.1149 3.5193 25 7 3.0570 -2.1799 3.2470 26 14 2.0209 -0.6269 5.2951 27 1 1.1846 0.5996 5.3318 28 1 1.3140 -1.7298 5.9946 29 1 3.3166 -0.3623 5.9709 30 1 -0.3634 0.5206 0.8861 31 1 -0.3634 0.5070 -0.8939 32 1 -0.3634 -1.0276 0.0079 33 1 2.7132 1.1012 -2.0515 34 1 2.1969 1.6435 -4.6402 35 1 3.8888 1.1153 -4.4765 36 1 1.6001 1.0050 -9.9486 37 1 0.0742 0.2391 -10.4525 38 1 0.1900 1.0308 -8.8628 39 1 2.2702 -2.6380 -9.5821 40 1 1.2893 -1.9028 -10.8730 41 1 2.8146 -1.1368 -10.3686 42 1 -0.5749 -1.0758 -7.7584 43 1 -0.6901 -1.8679 -9.3484 44 1 0.2903 -2.6023 -8.0574 45 1 4.1690 -0.8674 -0.6584 46 1 3.4909 -2.4114 -1.2751 47 1 3.6742 -2.0285 1.3961 48 1 2.1942 -2.7700 0.7170 49 1 3.4288 -2.7111 3.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088588706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:43 Heat of formation + Delta-G solvation = 112.304551 kcal Electronic energy + Delta-G solvation = -29339.438149 eV Core-core repulsion = 25340.554241 eV Total energy + Delta-G solvation = -3998.883909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.41665 -39.71044 -38.00962 -37.51139 -34.02806 -33.64853 -33.28675 -32.03338 -30.39922 -29.80799 -28.41542 -28.04993 -27.85984 -24.87301 -24.61010 -23.98808 -22.65029 -20.88602 -20.54504 -20.16206 -19.58926 -17.57363 -17.32720 -16.82447 -16.60030 -16.01534 -15.19120 -15.01302 -14.69806 -14.63355 -14.42682 -13.95774 -13.83152 -13.60603 -13.44785 -13.33022 -12.98330 -12.83584 -12.79762 -12.46186 -12.35137 -12.14503 -12.08534 -11.96106 -11.84105 -11.55701 -11.51903 -11.13347 -10.97225 -10.89983 -10.86319 -10.84031 -10.56165 -10.43442 -10.31015 -10.06855 -9.74966 -9.64814 -9.52700 -8.68751 -8.60472 -6.87188 -5.65264 -3.08279 1.18962 1.68821 2.07643 2.74395 3.30902 3.39419 3.44883 3.47350 3.66729 3.94551 4.04201 4.14604 4.41091 4.48070 4.80856 4.89351 4.91865 4.98880 5.04830 5.07702 5.14533 5.15966 5.29675 5.32180 5.42671 5.43776 5.53833 5.56386 5.59852 5.63716 5.66536 5.82307 5.84201 6.13247 6.14213 6.26219 6.32091 6.35854 6.54414 6.61160 6.73898 6.87379 7.11546 7.52724 7.63212 7.69708 7.86060 8.33864 8.34115 8.38572 9.20717 9.81698 10.45550 11.38010 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.002065 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.532241 B =13556.848545 C =13753.831207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.136 3.864 5 H 0.093 0.907 6 N -0.712 5.712 7 C 0.520 3.480 8 O -0.535 6.535 9 C -0.045 4.045 10 C 0.188 3.812 11 N -0.276 5.276 12 N -0.064 5.064 13 N -0.131 5.131 14 C 0.179 3.821 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.159 4.159 18 N -0.296 5.296 19 C -0.153 4.153 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.219 4.219 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.400 0.600 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.014 0.986 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 6.943 -26.775 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.031 3.969 5 H 0.111 0.889 6 N -0.363 5.363 7 C 0.303 3.697 8 O -0.411 6.411 9 C -0.088 4.088 10 C -0.095 4.095 11 N -0.147 5.147 12 N -0.056 5.056 13 N -0.045 5.045 14 C 0.098 3.902 15 C -0.216 4.216 16 C -0.211 4.211 17 C -0.218 4.218 18 N -0.146 5.146 19 C -0.192 4.192 20 C 0.027 3.973 21 N -0.321 5.321 22 C -0.347 4.347 23 H 0.096 0.904 24 C -0.207 4.207 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.234 0.766 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.127 0.873 48 H 0.032 0.968 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.910 5.691 -27.317 28.176 hybrid contribution -0.286 0.842 1.517 1.758 sum -4.196 6.533 -25.800 26.943 Atomic orbital electron populations 1.22239 0.97917 1.01368 0.99933 1.20993 0.92558 0.94825 0.86912 0.94586 1.22176 0.97721 0.90764 0.86220 0.88945 1.45957 1.68358 1.16204 1.05760 1.20043 0.77990 0.88334 0.83299 1.90734 1.47646 1.20473 1.82278 1.19884 1.06243 0.97780 0.84938 1.24592 0.86246 1.00303 0.98338 1.75816 1.26050 1.12345 1.00457 1.78888 0.94855 1.17485 1.14372 1.50398 1.08959 1.31161 1.13948 1.21362 0.89099 0.98260 0.81474 1.22221 1.02706 0.94679 1.01961 1.22086 1.01039 1.00663 0.97277 1.22235 0.95614 1.00687 1.03240 1.74525 1.26538 1.16569 0.96961 1.23415 0.96768 0.99368 0.99697 1.21946 0.97351 0.88385 0.89604 1.44501 1.59062 1.28420 1.00071 1.19065 1.26912 1.08269 0.80492 0.90389 1.24800 1.00397 0.97434 0.98071 1.69807 1.38972 1.18067 1.30020 0.86009 0.77343 0.77513 0.84673 1.20552 1.21802 1.21771 0.92689 0.94335 0.93015 0.76578 0.86038 0.85621 0.91472 0.89238 0.90422 0.90533 0.89325 0.90655 0.90363 0.89287 0.91237 0.91866 0.92031 0.87298 0.96827 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.15 37.16 0.34 -2.53 16 2 C 0.16 3.07 3.48 -66.95 -0.23 2.84 16 3 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 4 C 0.14 2.46 2.84 -66.03 -0.19 2.28 16 5 H 0.09 1.84 7.26 -51.93 -0.38 1.46 16 6 N -0.71 -10.07 5.19 -51.97 -0.27 -10.34 16 7 C 0.52 7.70 7.82 -10.99 -0.09 7.61 16 8 O -0.53 -10.43 15.68 5.55 0.09 -10.35 16 9 C -0.05 -0.49 6.33 -29.04 -0.18 -0.67 16 10 C 0.19 2.61 6.86 -156.62 -1.07 1.54 16 11 N -0.28 -4.24 12.50 32.45 0.41 -3.84 16 12 N -0.06 -0.89 12.24 60.35 0.74 -0.15 16 13 N -0.13 -1.55 3.73 0.48 0.00 -1.55 16 14 C 0.18 1.33 1.30 -131.82 -0.17 1.16 16 15 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 16 C -0.15 -0.86 7.91 37.16 0.29 -0.57 16 17 C -0.16 -1.09 8.67 37.16 0.32 -0.76 16 18 N -0.30 -3.92 11.83 32.47 0.38 -3.54 16 19 C -0.15 -3.06 6.79 -24.52 -0.17 -3.23 16 20 C 0.15 3.73 5.88 -2.53 -0.01 3.71 16 21 N -0.60 -14.76 3.13 -162.58 -0.51 -15.27 16 22 C -0.22 -5.92 9.87 -15.06 -0.15 -6.07 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 25 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 26 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 30 H 0.05 1.04 8.02 -51.92 -0.42 0.63 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 4.40 8.37 -40.82 -0.34 4.06 16 34 H 0.12 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.11 2.98 5.87 -51.93 -0.30 2.68 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -35.44 399.94 -6.83 -42.28 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.15 Total: 1.60 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.08 Total: 4.39 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 1.31 Total: -60.79 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.44 -6.83 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088588706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.581 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds