Wall clock time and date at job start Tue Mar 31 2020 21:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87489 * 2 1 4 4 C 1.54322 * 110.01139 * 238.90192 * 2 1 3 5 5 H 1.09006 * 110.71959 * 336.67661 * 4 2 1 6 6 N 1.46498 * 110.72056 * 99.77624 * 4 2 1 7 7 C 1.34773 * 119.99897 * 205.00000 * 6 4 2 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 4 10 10 C 1.50694 * 109.47496 * 180.02562 * 9 7 6 11 11 N 1.33327 * 126.54655 * 269.68683 * 10 9 7 12 12 N 1.29003 * 107.34983 * 179.83456 * 11 10 9 13 13 N 1.28782 * 108.72593 * 0.43080 * 12 11 10 14 14 C 1.46500 * 125.44502 * 179.72911 * 13 12 11 15 15 C 1.53002 * 109.47108 * 239.99927 * 14 13 12 16 16 C 1.52999 * 109.47248 * 359.97438 * 14 13 12 17 17 C 1.53002 * 109.47151 * 119.99764 * 14 13 12 18 18 N 1.28883 * 109.10377 * 359.72255 * 13 12 11 19 19 C 1.55282 * 103.00430 * 218.39875 * 4 2 1 20 20 C 1.54905 * 101.53029 * 35.35966 * 19 4 2 21 21 N 1.47023 * 109.88034 * 121.01704 * 2 1 3 22 22 C 1.36943 * 125.64628 * 298.52844 * 21 2 1 23 23 H 1.07999 * 119.99997 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99832 * 180.02562 * 22 21 2 25 25 N 1.31616 * 120.00113 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99740 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47632 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47079 * 120.00342 * 26 24 22 29 29 H 1.48506 * 109.47094 * 240.00015 * 26 24 22 30 30 H 1.09008 * 109.47282 * 300.43758 * 1 2 3 31 31 H 1.09003 * 109.47218 * 60.43851 * 1 2 3 32 32 H 1.09004 * 109.47562 * 180.44055 * 1 2 3 33 33 H 0.96997 * 120.00355 * 25.00009 * 6 4 2 34 34 H 1.09011 * 109.46606 * 299.99832 * 9 7 6 35 35 H 1.08995 * 109.47398 * 59.99178 * 9 7 6 36 36 H 1.08995 * 109.46987 * 59.99733 * 15 14 13 37 37 H 1.08996 * 109.47209 * 180.02562 * 15 14 13 38 38 H 1.09003 * 109.46883 * 299.99772 * 15 14 13 39 39 H 1.09005 * 109.47225 * 59.99801 * 16 14 13 40 40 H 1.08999 * 109.47485 * 180.02562 * 16 14 13 41 41 H 1.09008 * 109.47188 * 300.00084 * 16 14 13 42 42 H 1.08993 * 109.47188 * 60.00033 * 17 14 13 43 43 H 1.08999 * 109.46955 * 180.02562 * 17 14 13 44 44 H 1.08999 * 109.47255 * 299.99668 * 17 14 13 45 45 H 1.09001 * 110.95548 * 277.33125 * 19 4 2 46 46 H 1.08996 * 111.09853 * 153.45188 * 19 4 2 47 47 H 1.09002 * 110.36692 * 204.23391 * 20 19 4 48 48 H 1.08995 * 110.36664 * 82.02192 * 20 19 4 49 49 H 0.97000 * 120.00077 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3103 -1.4473 -1.6178 6 7 2.4541 0.1969 -2.2880 7 6 2.4583 -0.1895 -3.5791 8 8 2.1348 -1.3204 -3.8747 9 6 2.8662 0.7832 -4.6554 10 6 2.7847 0.1079 -6.0001 11 7 3.7616 -0.5613 -6.6129 12 7 3.2908 -0.9862 -7.7363 13 7 2.0674 -0.5989 -7.8449 14 6 1.1865 -0.8754 -8.9823 15 6 0.7300 0.4448 -9.6066 16 6 1.9446 -1.6974 -10.0265 17 6 -0.0349 -1.6618 -8.5021 18 7 1.7420 0.0708 -6.7928 19 6 3.2918 -1.5137 -0.6899 20 6 2.8176 -1.8763 0.7395 21 7 2.0300 -0.7124 1.1849 22 6 1.8015 -0.3544 2.4868 23 1 1.2078 0.5197 2.7103 24 6 2.3331 -1.1149 3.5193 25 7 3.0570 -2.1799 3.2470 26 14 2.0209 -0.6269 5.2951 27 1 1.1846 0.5996 5.3318 28 1 1.3140 -1.7298 5.9946 29 1 3.3166 -0.3623 5.9709 30 1 -0.3634 0.5206 0.8861 31 1 -0.3634 0.5070 -0.8939 32 1 -0.3634 -1.0276 0.0079 33 1 2.7132 1.1012 -2.0515 34 1 2.1969 1.6435 -4.6402 35 1 3.8888 1.1153 -4.4765 36 1 1.6001 1.0050 -9.9486 37 1 0.0742 0.2391 -10.4525 38 1 0.1900 1.0308 -8.8628 39 1 2.2702 -2.6380 -9.5821 40 1 1.2893 -1.9028 -10.8730 41 1 2.8146 -1.1368 -10.3686 42 1 -0.5749 -1.0758 -7.7584 43 1 -0.6901 -1.8679 -9.3484 44 1 0.2903 -2.6023 -8.0574 45 1 4.1690 -0.8674 -0.6584 46 1 3.4909 -2.4114 -1.2751 47 1 3.6742 -2.0285 1.3961 48 1 2.1942 -2.7700 0.7170 49 1 3.4288 -2.7111 3.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088588706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:42 Heat of formation + Delta-G solvation = 87.013022 kcal Electronic energy + Delta-G solvation = -29340.534872 eV Core-core repulsion = 25340.554241 eV Total energy + Delta-G solvation = -3999.980632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.36839 -41.02795 -39.24163 -38.54795 -35.61217 -34.64647 -34.20884 -33.77088 -32.06463 -31.06653 -29.93725 -28.51611 -28.41069 -26.46384 -25.81436 -25.58422 -23.73704 -22.19005 -21.64298 -21.57139 -21.15405 -18.75227 -18.56337 -18.02587 -17.76321 -17.36333 -16.73536 -16.28357 -15.94239 -15.62890 -15.33990 -15.21678 -15.15557 -14.75578 -14.61480 -14.34729 -14.08336 -14.00410 -13.73756 -13.43420 -13.22752 -13.22316 -13.19138 -12.93414 -12.85627 -12.84386 -12.73720 -12.60916 -12.55371 -12.23292 -12.15008 -12.09326 -11.93814 -11.93082 -11.84445 -11.56878 -11.43614 -11.34334 -10.81813 -10.72909 -10.02669 -8.88878 -7.73685 -5.18796 0.23346 0.93767 1.06717 1.49188 1.49777 1.59248 1.59912 2.15913 2.53139 2.83356 3.17934 3.37009 3.52985 3.56711 3.60821 3.68271 3.84074 3.87919 3.95797 4.22316 4.24745 4.42303 4.47000 4.51620 4.53077 4.55466 4.61175 4.63989 4.66714 4.72304 4.72657 4.73921 4.79387 4.82736 4.95822 5.02551 5.06380 5.11973 5.14577 5.22587 5.36759 5.37396 5.51498 5.60722 5.63466 5.81104 6.31509 6.55886 7.12094 7.24448 7.35233 7.80144 8.43778 9.28479 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.002065 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.532241 B =13556.848545 C =13753.831207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.151 3.849 3 H 0.059 0.941 4 C 0.154 3.846 5 H 0.074 0.926 6 N -0.697 5.697 7 C 0.522 3.478 8 O -0.586 6.586 9 C -0.037 4.037 10 C 0.174 3.826 11 N -0.310 5.310 12 N -0.080 5.080 13 N -0.120 5.120 14 C 0.162 3.838 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.156 4.156 18 N -0.304 5.304 19 C -0.139 4.139 20 C 0.157 3.843 21 N -0.614 5.614 22 C -0.222 4.222 23 H 0.088 0.912 24 C -0.073 4.073 25 N -0.952 5.952 26 Si 0.978 3.022 27 H -0.263 1.263 28 H -0.298 1.298 29 H -0.293 1.293 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.420 0.580 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.063 0.937 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.127 0.873 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.078 0.922 48 H -0.019 1.019 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 9.612 -28.769 30.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.077 0.923 4 C 0.048 3.952 5 H 0.092 0.908 6 N -0.349 5.349 7 C 0.308 3.692 8 O -0.465 6.465 9 C -0.079 4.079 10 C -0.109 4.109 11 N -0.180 5.180 12 N -0.072 5.072 13 N -0.035 5.035 14 C 0.082 3.918 15 C -0.209 4.209 16 C -0.207 4.207 17 C -0.214 4.214 18 N -0.155 5.155 19 C -0.179 4.179 20 C 0.031 3.969 21 N -0.339 5.339 22 C -0.351 4.351 23 H 0.106 0.894 24 C -0.265 4.265 25 N -0.603 5.603 26 Si 0.807 3.193 27 H -0.187 1.187 28 H -0.226 1.226 29 H -0.220 1.220 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.258 0.742 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.145 0.855 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.096 0.904 48 H -0.001 1.001 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.049 8.427 -29.344 30.944 hybrid contribution -0.012 -0.018 2.015 2.016 sum -5.061 8.409 -27.328 29.037 Atomic orbital electron populations 1.22130 0.96641 1.00507 1.01328 1.21215 0.93424 0.95341 0.85560 0.92293 1.21689 0.96027 0.90894 0.86625 0.90751 1.45687 1.67972 1.16405 1.04823 1.20706 0.76530 0.88211 0.83774 1.90727 1.49839 1.22977 1.83002 1.20043 1.08915 0.97136 0.81783 1.25135 0.86007 1.00366 0.99380 1.75764 1.27386 1.13522 1.01303 1.78805 0.95910 1.18083 1.14379 1.50951 1.08739 1.29587 1.14268 1.21998 0.88954 0.99999 0.80805 1.22238 1.03003 0.93045 1.02610 1.22135 1.01556 0.99328 0.97693 1.22261 0.95697 0.99149 1.04303 1.74493 1.26555 1.17032 0.97429 1.23211 0.97968 0.99880 0.96793 1.21653 0.95685 0.87787 0.91745 1.44741 1.59509 1.28692 1.00966 1.19446 1.25927 1.08093 0.81649 0.89428 1.25639 1.00986 0.97835 1.02015 1.70057 1.40373 1.19279 1.30561 0.84995 0.76998 0.77408 0.79853 1.18690 1.22596 1.22042 0.93252 0.90914 0.95006 0.74179 0.82144 0.82622 0.91800 0.85763 0.91372 0.92231 0.85667 0.91088 0.91792 0.85484 0.93348 0.90673 0.92243 0.90434 1.00131 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.15 71.98 0.66 -4.52 16 2 C 0.15 5.76 3.48 45.34 0.16 5.91 16 3 H 0.06 2.03 7.72 -2.39 -0.02 2.01 16 4 C 0.15 5.42 2.84 46.22 0.13 5.55 16 5 H 0.07 2.96 7.26 -2.38 -0.02 2.94 16 6 N -0.70 -17.88 5.19 -436.71 -2.26 -20.15 16 7 C 0.52 14.44 7.82 87.66 0.69 15.12 16 8 O -0.59 -22.67 15.68 -3.05 -0.05 -22.71 16 9 C -0.04 -0.69 6.33 29.10 0.18 -0.50 16 10 C 0.17 4.62 6.86 138.55 0.95 5.57 16 11 N -0.31 -9.45 12.50 -51.26 -0.64 -10.10 16 12 N -0.08 -2.23 12.24 37.02 0.45 -1.77 16 13 N -0.12 -2.77 3.73 -152.39 -0.57 -3.34 16 14 C 0.16 2.16 1.30 3.60 0.00 2.17 16 15 C -0.15 -1.22 8.66 71.98 0.62 -0.60 16 16 C -0.15 -1.44 7.91 71.98 0.57 -0.87 16 17 C -0.16 -1.90 8.67 71.98 0.62 -1.28 16 18 N -0.30 -7.77 11.83 -51.20 -0.61 -8.37 16 19 C -0.14 -5.58 6.79 32.03 0.22 -5.36 16 20 C 0.16 7.97 5.88 86.85 0.51 8.48 16 21 N -0.61 -30.54 3.13 -668.28 -2.09 -32.63 16 22 C -0.22 -11.99 9.87 84.03 0.83 -11.16 16 23 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 24 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 25 N -0.95 -57.13 10.09 21.65 0.22 -56.92 16 26 Si 0.98 45.35 29.55 68.60 2.03 47.37 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 30 H 0.05 1.78 8.02 -2.38 -0.02 1.76 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.42 7.56 8.37 -92.71 -0.78 6.78 16 34 H 0.16 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 45 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.08 4.45 5.87 -2.39 -0.01 4.44 16 48 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 49 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -81.47 399.94 3.27 -78.21 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.17 Total: 15.51 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 6.61 Total: 14.90 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -5.50 Total: -133.28 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -81.47 3.27 -78.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088588706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.221 kcal (2) G-P(sol) polarization free energy of solvation -81.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds