Wall clock time and date at job start Tue Mar 31 2020 21:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21534 * 120.00019 * 0.02562 * 19 18 17 21 21 C 1.48011 * 119.99768 * 180.02562 * 19 18 17 22 22 N 1.34186 * 126.69708 * 0.02682 * 21 19 18 23 23 N 1.28982 * 107.25175 * 180.02562 * 22 21 19 24 24 N 1.28722 * 108.98534 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.31816 * 180.02562 * 24 23 22 26 26 C 1.53004 * 109.46977 * 359.97403 * 25 24 23 27 27 C 1.52993 * 109.47283 * 119.97670 * 25 24 23 28 28 C 1.52999 * 109.47033 * 239.97759 * 25 24 23 29 29 N 1.28863 * 109.36160 * 359.73004 * 24 23 22 30 30 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 31 31 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 32 32 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 33 33 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 34 34 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 35 35 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 36 36 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 37 37 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 38 38 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 39 39 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 40 40 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 41 41 H 1.09003 * 109.46953 * 60.00436 * 26 25 24 42 42 H 1.08999 * 109.46933 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47270 * 300.00292 * 26 25 24 44 44 H 1.09003 * 109.47383 * 59.99789 * 27 25 24 45 45 H 1.08999 * 109.47256 * 179.97438 * 27 25 24 46 46 H 1.09003 * 109.47265 * 299.99942 * 27 25 24 47 47 H 1.08999 * 109.47145 * 59.99751 * 28 25 24 48 48 H 1.08999 * 109.47105 * 180.02562 * 28 25 24 49 49 H 1.09006 * 109.47189 * 300.00029 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6636 1.0794 4.9157 21 6 3.2356 -0.9348 5.9561 22 7 3.4521 -2.2590 5.9711 23 7 3.7904 -2.5777 7.1742 24 7 3.7944 -1.5168 7.9031 25 6 4.1279 -1.4700 9.3289 26 6 4.4706 -2.8783 9.8190 27 6 5.3312 -0.5492 9.5413 28 6 2.9302 -0.9337 10.1155 29 7 3.4653 -0.5013 7.1813 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.5399 0.8745 32 1 -0.3633 0.4875 -0.9047 33 1 1.3130 -1.4731 -1.5800 34 1 2.3716 -0.0991 -1.9990 35 1 2.3659 -2.2172 -4.2773 36 1 3.7961 -2.1446 1.2133 37 1 4.1932 -0.4492 0.7977 38 1 2.9854 0.8627 2.2436 39 1 1.2749 0.5884 2.6524 40 1 2.7627 -1.6601 3.4934 41 1 5.3239 -3.2604 9.2586 42 1 4.7183 -2.8436 10.8799 43 1 3.6134 -3.5343 9.6676 44 1 5.0871 0.4541 9.1921 45 1 5.5790 -0.5141 10.6021 46 1 6.1845 -0.9313 8.9809 47 1 2.0730 -1.5897 9.9641 48 1 3.1785 -0.8984 11.1762 49 1 2.6860 0.0696 9.7663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092621490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:39 Heat of formation + Delta-G solvation = 109.138431 kcal Electronic energy + Delta-G solvation = -29064.292413 eV Core-core repulsion = 25065.271211 eV Total energy + Delta-G solvation = -3999.021202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.66541 -39.73540 -38.14203 -37.88858 -34.84094 -33.74315 -33.04140 -32.60655 -30.70645 -29.46786 -28.21196 -28.17161 -26.31495 -25.62579 -24.79231 -24.48568 -22.68218 -21.26293 -20.84135 -20.01067 -19.33564 -18.12623 -17.65478 -17.10266 -16.70528 -16.04840 -15.45641 -15.03659 -14.81075 -14.65361 -14.38233 -14.21461 -13.89407 -13.69750 -13.50448 -13.25263 -13.08609 -12.97754 -12.89294 -12.51275 -12.48052 -12.46069 -12.12776 -11.83901 -11.75440 -11.67353 -11.36565 -11.29515 -11.24298 -11.20211 -10.78240 -10.77164 -10.60637 -10.51189 -10.09140 -9.96647 -9.90542 -9.72077 -9.56188 -9.07564 -8.54782 -6.79405 -5.69446 -3.01462 0.79717 1.28700 1.36920 2.72654 3.01196 3.42558 3.47944 3.49725 3.60355 3.87170 3.89919 4.01207 4.35428 4.52264 4.80389 4.81853 4.82834 4.98825 5.00775 5.03345 5.04681 5.11039 5.20904 5.30674 5.34965 5.40734 5.47031 5.55393 5.57225 5.59975 5.76462 5.82982 5.85853 6.03800 6.07985 6.20771 6.28671 6.34044 6.50915 6.62078 6.65271 6.77240 6.96890 7.32923 7.59877 7.67916 7.86869 7.90556 8.05113 8.29155 9.25143 9.85651 10.52129 11.42623 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.002239 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.810002 B =12503.223191 C =13662.089155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.228 4.228 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.920 5.920 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.140 3.860 15 C -0.114 4.114 16 H 0.084 0.916 17 C 0.133 3.867 18 N -0.698 5.698 19 C 0.614 3.386 20 O -0.514 6.514 21 C 0.128 3.872 22 N -0.254 5.254 23 N -0.055 5.055 24 N -0.126 5.126 25 C 0.176 3.824 26 C -0.154 4.154 27 C -0.161 4.161 28 C -0.160 4.160 29 N -0.246 5.246 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.252 0.748 36 H 0.039 0.961 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 2.099 28.516 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.087 0.913 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.014 3.986 15 C -0.133 4.133 16 H 0.102 0.898 17 C 0.010 3.990 18 N -0.350 5.350 19 C 0.393 3.607 20 O -0.386 6.386 21 C -0.156 4.156 22 N -0.128 5.128 23 N -0.047 5.047 24 N -0.041 5.041 25 C 0.096 3.904 26 C -0.212 4.212 27 C -0.219 4.219 28 C -0.219 4.219 29 N -0.100 5.100 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.249 0.751 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.111 2.393 28.682 28.782 hybrid contribution 0.449 -0.793 -0.883 1.269 sum 0.560 1.600 27.799 27.851 Atomic orbital electron populations 1.21701 0.95276 1.01527 1.00725 1.22438 0.95182 0.99109 0.96211 0.91313 1.21228 0.89248 0.93058 0.90682 1.44459 1.32775 1.51556 1.04430 1.19059 1.04457 1.18344 0.93737 0.90456 1.24812 0.98553 0.99922 0.97129 1.69974 1.30238 1.42689 1.13828 0.86130 0.78900 0.81592 0.79361 1.21640 1.21825 1.20666 1.21612 0.92909 0.97274 0.86827 1.22704 0.99703 0.98140 0.92793 0.89818 1.21572 1.00574 0.93709 0.83116 1.45820 1.67930 1.13207 1.08044 1.16102 0.78339 0.85556 0.80665 1.90845 1.50777 1.13273 1.83695 1.25379 1.05957 0.90357 0.93917 1.76179 1.14729 1.11338 1.10581 1.78899 1.15416 1.13441 0.96992 1.50763 1.39649 1.01505 1.12180 1.21528 0.98044 1.00190 0.70648 1.22116 1.04169 0.92311 1.02571 1.22267 0.95537 0.99953 1.04170 1.22264 0.95921 1.03054 1.00636 1.74973 1.15992 1.15811 1.03176 0.92727 0.93642 0.92674 0.93144 0.94194 0.93794 0.94305 0.96301 0.90706 0.90945 0.75128 0.90408 0.89055 0.90443 0.90182 0.88927 0.91203 0.91246 0.88924 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.13 37.16 0.34 -1.74 16 2 C -0.11 -1.97 3.01 -88.78 -0.27 -2.23 16 3 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 4 C 0.18 4.36 4.98 -3.06 -0.02 4.35 16 5 N -0.61 -15.41 3.39 -170.08 -0.58 -15.99 16 6 C -0.23 -6.38 10.26 -15.06 -0.15 -6.53 16 7 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 8 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 9 N -0.92 -27.08 10.36 55.49 0.57 -26.50 16 10 Si 0.91 22.27 29.56 -169.99 -5.02 17.24 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.14 2.84 6.65 -2.53 -0.02 2.82 16 15 C -0.11 -1.88 2.49 -88.47 -0.22 -2.10 16 16 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 17 C 0.13 1.92 5.14 -4.04 -0.02 1.90 16 18 N -0.70 -9.70 5.50 -61.19 -0.34 -10.04 16 19 C 0.61 9.33 7.84 -12.25 -0.10 9.24 16 20 O -0.51 -9.10 17.10 5.34 0.09 -9.01 16 21 C 0.13 1.83 8.14 -156.24 -1.27 0.56 16 22 N -0.25 -3.53 12.26 32.10 0.39 -3.13 16 23 N -0.05 -0.67 12.21 60.35 0.74 0.07 16 24 N -0.13 -1.34 3.72 0.52 0.00 -1.33 16 25 C 0.18 1.07 1.30 -131.82 -0.17 0.90 16 26 C -0.15 -0.65 7.90 37.16 0.29 -0.35 16 27 C -0.16 -0.78 8.65 37.15 0.32 -0.46 16 28 C -0.16 -0.75 8.66 37.16 0.32 -0.42 16 29 N -0.25 -3.24 11.85 32.11 0.38 -2.86 16 30 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 1.33 6.98 -51.93 -0.36 0.97 16 34 H 0.04 1.07 7.61 -51.93 -0.40 0.67 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 38 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.41 5.37 8.22 -40.82 -0.34 5.04 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -33.96 401.78 -6.97 -40.93 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.22 Total: -1.04 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.05 Total: 5.60 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 1.17 Total: -59.78 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.96 -6.97 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092621490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.067 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds