Wall clock time and date at job start Tue Mar 31 2020 21:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21534 * 120.00019 * 0.02562 * 19 18 17 21 21 C 1.48011 * 119.99768 * 180.02562 * 19 18 17 22 22 N 1.34186 * 126.69708 * 0.02682 * 21 19 18 23 23 N 1.28982 * 107.25175 * 180.02562 * 22 21 19 24 24 N 1.28722 * 108.98534 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.31816 * 180.02562 * 24 23 22 26 26 C 1.53004 * 109.46977 * 359.97403 * 25 24 23 27 27 C 1.52993 * 109.47283 * 119.97670 * 25 24 23 28 28 C 1.52999 * 109.47033 * 239.97759 * 25 24 23 29 29 N 1.28863 * 109.36160 * 359.73004 * 24 23 22 30 30 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 31 31 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 32 32 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 33 33 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 34 34 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 35 35 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 36 36 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 37 37 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 38 38 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 39 39 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 40 40 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 41 41 H 1.09003 * 109.46953 * 60.00436 * 26 25 24 42 42 H 1.08999 * 109.46933 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47270 * 300.00292 * 26 25 24 44 44 H 1.09003 * 109.47383 * 59.99789 * 27 25 24 45 45 H 1.08999 * 109.47256 * 179.97438 * 27 25 24 46 46 H 1.09003 * 109.47265 * 299.99942 * 27 25 24 47 47 H 1.08999 * 109.47145 * 59.99751 * 28 25 24 48 48 H 1.08999 * 109.47105 * 180.02562 * 28 25 24 49 49 H 1.09006 * 109.47189 * 300.00029 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6636 1.0794 4.9157 21 6 3.2356 -0.9348 5.9561 22 7 3.4521 -2.2590 5.9711 23 7 3.7904 -2.5777 7.1742 24 7 3.7944 -1.5168 7.9031 25 6 4.1279 -1.4700 9.3289 26 6 4.4706 -2.8783 9.8190 27 6 5.3312 -0.5492 9.5413 28 6 2.9302 -0.9337 10.1155 29 7 3.4653 -0.5013 7.1813 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.5399 0.8745 32 1 -0.3633 0.4875 -0.9047 33 1 1.3130 -1.4731 -1.5800 34 1 2.3716 -0.0991 -1.9990 35 1 2.3659 -2.2172 -4.2773 36 1 3.7961 -2.1446 1.2133 37 1 4.1932 -0.4492 0.7977 38 1 2.9854 0.8627 2.2436 39 1 1.2749 0.5884 2.6524 40 1 2.7627 -1.6601 3.4934 41 1 5.3239 -3.2604 9.2586 42 1 4.7183 -2.8436 10.8799 43 1 3.6134 -3.5343 9.6676 44 1 5.0871 0.4541 9.1921 45 1 5.5790 -0.5141 10.6021 46 1 6.1845 -0.9313 8.9809 47 1 2.0730 -1.5897 9.9641 48 1 3.1785 -0.8984 11.1762 49 1 2.6860 0.0696 9.7663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092621490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:38 Heat of formation + Delta-G solvation = 85.569543 kcal Electronic energy + Delta-G solvation = -29065.314437 eV Core-core repulsion = 25065.271211 eV Total energy + Delta-G solvation = -4000.043226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.60858 -40.96139 -39.57467 -38.61402 -36.23173 -34.83963 -34.59770 -33.59441 -32.52722 -30.92506 -28.64612 -28.53191 -27.94317 -27.13295 -25.88469 -25.61675 -24.25097 -22.33806 -21.76910 -21.59464 -20.81517 -19.26464 -18.69213 -18.56728 -17.76241 -17.33391 -16.85258 -16.47795 -16.02629 -15.62754 -15.29458 -15.26067 -15.20730 -14.99127 -14.70546 -14.41540 -14.15595 -14.04101 -13.48860 -13.42558 -13.30074 -13.27699 -13.22651 -13.08759 -12.86032 -12.84419 -12.68919 -12.63882 -12.41113 -12.34981 -12.11623 -12.11139 -11.94855 -11.85309 -11.72684 -11.53884 -11.48201 -11.36055 -11.21162 -10.66854 -10.26682 -8.86845 -7.84501 -5.18465 -0.17275 0.24465 0.63870 1.46067 1.47847 1.56580 1.66526 1.86644 2.50278 2.78613 2.94328 3.32882 3.48838 3.56141 3.60692 3.64083 3.79078 3.93904 3.96147 4.00434 4.29342 4.37392 4.41770 4.51962 4.52988 4.59071 4.60872 4.62189 4.72942 4.73290 4.75343 4.80118 4.86706 4.98165 5.02513 5.07395 5.11493 5.13221 5.17767 5.22236 5.25658 5.39213 5.46561 5.50485 5.74267 5.84704 6.18108 6.22641 6.79104 7.03335 7.12517 7.80110 8.44800 9.26148 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.002239 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.810002 B =12503.223191 C =13662.089155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.080 0.920 4 C 0.190 3.810 5 N -0.629 5.629 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.066 4.066 9 N -0.948 5.948 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.295 1.295 13 H -0.269 1.269 14 C 0.135 3.865 15 C -0.092 4.092 16 H 0.090 0.910 17 C 0.144 3.856 18 N -0.690 5.690 19 C 0.619 3.381 20 O -0.542 6.542 21 C 0.113 3.887 22 N -0.269 5.269 23 N -0.059 5.059 24 N -0.109 5.109 25 C 0.159 3.841 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.157 4.157 29 N -0.256 5.256 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.018 0.982 34 H -0.001 1.001 35 H 0.246 0.754 36 H 0.045 0.955 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.418 0.582 41 H 0.068 0.932 42 H 0.127 0.873 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.129 0.871 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.129 0.871 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 1.813 31.596 31.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.118 4.118 3 H 0.098 0.902 4 C 0.065 3.935 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.098 0.902 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.804 3.196 11 H -0.213 1.213 12 H -0.222 1.222 13 H -0.194 1.194 14 C 0.010 3.990 15 C -0.111 4.111 16 H 0.109 0.891 17 C 0.021 3.979 18 N -0.342 5.342 19 C 0.399 3.601 20 O -0.417 6.417 21 C -0.171 4.171 22 N -0.143 5.143 23 N -0.051 5.051 24 N -0.026 5.026 25 C 0.080 3.920 26 C -0.208 4.208 27 C -0.216 4.216 28 C -0.215 4.215 29 N -0.110 5.110 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.017 0.983 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.255 0.745 41 H 0.087 0.913 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.148 0.852 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.148 0.852 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.371 2.083 31.796 31.867 hybrid contribution 0.450 -0.704 -1.705 1.899 sum 0.821 1.379 30.091 30.134 Atomic orbital electron populations 1.21656 0.92912 1.01748 1.02267 1.22311 0.97024 0.98701 0.93804 0.90194 1.21007 0.88166 0.91936 0.92384 1.44791 1.32824 1.51370 1.06542 1.19438 1.04857 1.18470 0.94326 0.90185 1.25645 0.99850 1.02067 0.98333 1.70194 1.31801 1.44024 1.13712 0.85098 0.78226 0.78823 0.77441 1.21337 1.22215 1.19373 1.21795 0.95199 0.97586 0.84454 1.22494 0.97142 0.98451 0.93060 0.89145 1.21421 1.01473 0.92924 0.82103 1.45718 1.67403 1.13397 1.07639 1.16131 0.77765 0.85203 0.80983 1.90824 1.52222 1.14401 1.84207 1.25195 1.07212 0.90550 0.94120 1.76140 1.15441 1.11217 1.11530 1.78829 1.15571 1.13925 0.96769 1.51347 1.37511 1.00448 1.13263 1.22231 0.99274 1.01969 0.68479 1.22185 1.03447 0.90648 1.04566 1.22314 0.94410 0.98498 1.06397 1.22309 0.95002 1.01751 1.02450 1.74938 1.16231 1.16766 1.03080 0.93307 0.90308 0.92797 0.96412 0.98270 0.94430 0.93691 0.96183 0.90954 0.89181 0.74517 0.91307 0.85423 0.91138 0.91708 0.85219 0.92105 0.91906 0.85245 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.13 71.98 0.66 -3.08 16 2 C -0.10 -3.46 3.01 -9.60 -0.03 -3.49 16 3 H 0.08 2.65 8.04 -2.39 -0.02 2.63 16 4 C 0.19 9.37 4.98 86.73 0.43 9.80 16 5 N -0.63 -32.61 3.39 -692.00 -2.35 -34.96 16 6 C -0.24 -13.79 10.26 84.03 0.86 -12.93 16 7 H 0.08 4.39 7.84 -2.91 -0.02 4.36 16 8 C -0.07 -3.81 5.48 84.86 0.46 -3.35 16 9 N -0.95 -57.83 10.36 21.65 0.22 -57.60 16 10 Si 0.98 46.55 29.56 68.60 2.03 48.58 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 C 0.13 5.40 6.65 86.86 0.58 5.98 16 15 C -0.09 -2.91 2.49 -9.40 -0.02 -2.94 16 16 H 0.09 2.80 8.04 -2.39 -0.02 2.78 16 17 C 0.14 3.85 5.14 86.38 0.44 4.29 16 18 N -0.69 -18.22 5.50 -465.80 -2.56 -20.78 16 19 C 0.62 18.30 7.84 86.84 0.68 18.98 16 20 O -0.54 -18.78 17.10 -3.82 -0.07 -18.84 16 21 C 0.11 3.18 8.14 137.15 1.12 4.29 16 22 N -0.27 -7.35 12.26 -52.36 -0.64 -7.99 16 23 N -0.06 -1.39 12.21 37.02 0.45 -0.94 16 24 N -0.11 -2.20 3.72 -152.26 -0.57 -2.77 16 25 C 0.16 1.62 1.30 3.60 0.00 1.62 16 26 C -0.15 -0.89 7.90 71.98 0.57 -0.32 16 27 C -0.16 -1.19 8.65 71.98 0.62 -0.57 16 28 C -0.16 -1.10 8.66 71.98 0.62 -0.47 16 29 N -0.26 -6.59 11.85 -52.31 -0.62 -7.21 16 30 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.02 0.98 6.98 -2.39 -0.02 0.96 16 34 H 0.00 -0.05 7.61 -2.39 -0.02 -0.07 16 35 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.02 0.82 7.91 -2.39 -0.02 0.80 16 38 H 0.07 2.04 7.96 -2.39 -0.02 2.02 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 40 H 0.42 10.34 8.22 -92.71 -0.76 9.58 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -76.60 401.78 3.08 -73.52 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.18 Total: 11.18 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 7.00 Total: 17.83 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -6.06 Total: -132.25 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.60 3.08 -73.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092621490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.087 kcal (2) G-P(sol) polarization free energy of solvation -76.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds