Wall clock time and date at job start Tue Mar 31 2020 19:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.49548 * 2 1 4 4 C 1.53041 * 109.49704 * 239.90532 * 2 1 3 5 5 C 1.53043 * 109.53491 * 178.68419 * 4 2 1 6 6 C 1.52760 * 109.38304 * 61.24003 * 5 4 2 7 7 H 1.08995 * 109.43556 * 65.42612 * 6 5 4 8 8 C 1.53001 * 109.50643 * 185.70573 * 6 5 4 9 9 N 1.46505 * 109.47161 * 179.07974 * 8 6 5 10 10 C 1.34770 * 120.00002 * 180.02562 * 9 8 6 11 11 O 1.21286 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00187 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.47598 * 179.97438 * 12 10 9 14 14 N 1.46501 * 109.47148 * 179.97438 * 13 12 10 15 15 C 1.34606 * 126.43071 * 124.71601 * 14 13 12 16 16 N 1.31068 * 106.67476 * 179.88030 * 15 14 13 17 17 N 1.28848 * 107.99367 * 0.38376 * 16 15 14 18 18 N 1.28736 * 109.39142 * 359.75745 * 17 16 15 19 19 N 1.46929 * 109.00631 * 305.58279 * 6 5 4 20 20 C 1.36939 * 120.63085 * 233.58218 * 19 6 5 21 21 H 1.08001 * 119.99751 * 30.57800 * 20 19 6 22 22 C 1.38806 * 120.00119 * 210.56849 * 20 19 6 23 23 N 1.31617 * 119.99953 * 22.96228 * 22 20 19 24 24 Si 1.86803 * 120.00009 * 202.95834 * 22 20 19 25 25 H 1.48500 * 109.47149 * 240.00138 * 24 22 20 26 26 H 1.48492 * 109.47268 * 0.02562 * 24 22 20 27 27 H 1.48504 * 109.46838 * 120.00520 * 24 22 20 28 28 C 1.46925 * 118.73619 * 53.31567 * 19 6 5 29 29 H 1.08992 * 109.46877 * 299.93175 * 1 2 3 30 30 H 1.08998 * 109.46731 * 59.93712 * 1 2 3 31 31 H 1.08999 * 109.46909 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46948 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47394 * 300.06235 * 3 2 1 34 34 H 1.09005 * 109.47229 * 60.06477 * 3 2 1 35 35 H 1.09005 * 109.45698 * 298.70056 * 4 2 1 36 36 H 1.08996 * 109.46298 * 58.65895 * 4 2 1 37 37 H 1.09000 * 109.49741 * 181.31404 * 5 4 2 38 38 H 1.08998 * 109.49410 * 301.41171 * 5 4 2 39 39 H 1.08996 * 109.47185 * 299.07803 * 8 6 5 40 40 H 1.09000 * 109.47159 * 59.08101 * 8 6 5 41 41 H 0.97002 * 119.99777 * 0.02562 * 9 8 6 42 42 H 1.09009 * 109.47069 * 299.99943 * 12 10 9 43 43 H 1.09001 * 109.47031 * 59.99362 * 12 10 9 44 44 H 1.08993 * 109.47341 * 300.00517 * 13 12 10 45 45 H 1.09000 * 109.46793 * 60.00130 * 13 12 10 46 46 H 1.07999 * 126.65950 * 0.02562 * 15 14 13 47 47 H 0.96999 * 120.00292 * 5.44479 * 23 22 20 48 48 H 1.09000 * 109.58866 * 66.43025 * 28 19 6 49 49 H 1.08999 * 109.58663 * 186.70886 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0409 -0.7234 -1.2482 5 6 3.5709 -0.6953 -1.2658 6 6 4.1055 -1.4216 -0.0328 7 1 3.8413 -2.4774 -0.0908 8 6 5.6271 -1.2732 0.0278 9 7 6.1367 -1.9514 1.2223 10 6 7.4587 -1.9518 1.4846 11 8 8.2266 -1.3912 0.7315 12 6 7.9830 -2.6498 2.7130 13 6 9.5046 -2.5014 2.7737 14 7 10.0141 -3.1795 3.9682 15 6 10.9589 -4.1377 4.0016 16 7 11.1170 -4.4661 5.2606 17 7 10.3056 -3.7530 5.9629 18 7 9.6377 -2.9745 5.1850 19 7 3.5046 -0.8287 1.1698 20 6 4.2936 -0.3778 2.1942 21 1 5.2801 0.0093 1.9859 22 6 3.8255 -0.4182 3.5003 23 7 2.8711 -1.2618 3.8316 24 14 4.5500 0.7249 4.7880 25 1 5.1468 -0.0794 5.8843 26 1 5.6003 1.5698 4.1650 27 1 3.4783 1.5934 5.3381 28 6 2.0414 -0.7234 1.2498 29 1 -0.3633 0.5127 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6767 1.9566 -0.8894 34 1 1.6785 1.9560 0.8906 35 1 1.6968 -1.7576 -1.2348 36 1 1.6582 -0.2251 -2.1389 37 1 3.9336 -1.1902 -2.1667 38 1 3.9159 0.3386 -1.2541 39 1 6.0715 -1.7206 -0.8613 40 1 5.8877 -0.2157 0.0714 41 1 5.5227 -2.4000 1.8244 42 1 7.5382 -2.2032 3.6023 43 1 7.7229 -3.7074 2.6688 44 1 9.9490 -2.9482 1.8844 45 1 9.7650 -1.4439 2.8177 46 1 11.4860 -4.5532 3.1556 47 1 2.5499 -1.9092 3.1845 48 1 1.6053 -1.7212 1.2985 49 1 1.7637 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099280685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:50 Heat of formation + Delta-G solvation = 92.606198 kcal Electronic energy + Delta-G solvation = -30428.006428 eV Core-core repulsion = 26428.268334 eV Total energy + Delta-G solvation = -3999.738093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.23188 -39.70127 -38.75093 -36.18426 -35.26165 -33.57903 -32.60924 -32.43757 -31.41791 -29.90757 -27.82770 -26.78027 -25.80630 -25.50599 -23.89562 -23.50350 -22.37145 -22.14586 -20.36070 -19.88651 -18.08852 -18.02037 -17.34273 -17.06085 -16.28857 -15.94254 -15.71372 -15.49348 -15.19157 -14.47310 -14.10024 -13.85254 -13.72614 -13.53845 -13.49054 -13.27529 -12.88389 -12.73358 -12.62984 -12.20312 -12.18355 -11.97695 -11.71796 -11.49967 -11.46060 -11.34585 -11.24214 -10.94204 -10.87180 -10.84779 -10.73510 -10.42155 -10.39007 -10.17555 -10.06228 -9.97769 -9.72501 -9.63313 -9.20961 -8.63741 -8.37265 -6.97588 -6.15086 -3.40101 1.17727 1.85621 2.18134 2.88453 3.44465 3.46437 3.57055 3.58706 4.09101 4.13156 4.44258 4.45393 4.72922 4.89513 4.97039 5.15974 5.17554 5.26440 5.27517 5.30136 5.40608 5.46188 5.56528 5.57951 5.68638 5.73884 5.82960 5.91491 5.99677 6.04374 6.06163 6.13300 6.17556 6.27127 6.29359 6.32270 6.35845 6.46894 6.67192 6.73082 6.78830 6.84631 6.94351 7.09233 7.14413 7.93690 7.97603 8.44954 8.53483 8.56951 8.95379 9.69503 10.15973 11.09234 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.003254 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.127311 B = 8603.933458 C = 9765.758797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.096 4.096 5 C -0.131 4.131 6 C 0.162 3.838 7 H 0.028 0.972 8 C 0.137 3.863 9 N -0.683 5.683 10 C 0.516 3.484 11 O -0.568 6.568 12 C -0.158 4.158 13 C 0.132 3.868 14 N -0.305 5.305 15 C 0.156 3.844 16 N -0.312 5.312 17 N -0.080 5.080 18 N -0.084 5.084 19 N -0.592 5.592 20 C -0.349 4.349 21 H 0.062 0.938 22 C -0.014 4.014 23 N -0.912 5.912 24 Si 1.054 2.946 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.290 1.290 28 C 0.166 3.834 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.416 0.584 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.234 0.766 47 H 0.270 0.730 48 H 0.015 0.985 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 -3.077 -9.258 11.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C -0.182 4.182 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.056 3.944 7 H 0.046 0.954 8 C 0.013 3.987 9 N -0.333 5.333 10 C 0.300 3.700 11 O -0.450 6.450 12 C -0.199 4.199 13 C 0.011 3.989 14 N -0.108 5.108 15 C -0.142 4.142 16 N -0.161 5.161 17 N -0.074 5.074 18 N -0.071 5.071 19 N -0.317 5.317 20 C -0.478 4.478 21 H 0.079 0.921 22 C -0.218 4.218 23 N -0.551 5.551 24 Si 0.884 3.116 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.040 3.960 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.254 0.746 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.250 0.750 47 H 0.082 0.918 48 H 0.033 0.967 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.879 -2.099 -6.796 9.228 hybrid contribution -0.208 -0.590 -2.401 2.481 sum 5.671 -2.689 -9.198 11.135 Atomic orbital electron populations 1.21789 0.95812 1.00934 1.00848 1.21114 0.93955 0.96480 0.97496 1.21704 1.02218 0.94811 0.99497 1.21408 0.95332 0.99595 0.97009 1.21931 0.96058 1.01448 0.97586 1.20615 0.90332 0.94965 0.88529 0.95420 1.21277 0.93699 0.97706 0.85983 1.45969 1.06593 1.53971 1.26749 1.19909 0.83148 0.80889 0.86021 1.90672 1.56912 1.47066 1.50346 1.21876 0.93921 1.03617 1.00460 1.22031 0.95203 0.99918 0.81725 1.48897 1.26543 1.26894 1.08435 1.27726 0.94630 0.92478 0.99400 1.74979 1.19089 1.21386 1.00639 1.78670 1.03269 1.02962 1.22515 1.78973 1.20189 1.20125 0.87794 1.44108 1.01148 1.70150 1.16268 1.19978 1.01255 1.39837 0.86697 0.92083 1.25702 0.99395 1.00004 0.96684 1.70744 1.30130 1.16912 1.37351 0.83667 0.75690 0.76275 0.75962 1.21739 1.21819 1.21646 1.20998 0.83720 0.96209 0.95096 0.92913 0.93641 0.93308 0.91478 0.94788 0.93501 0.92951 0.93340 0.92998 0.91515 0.92659 0.91423 0.74587 0.86557 0.88296 0.86049 0.86625 0.75027 0.91835 0.96688 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.48 37.16 0.32 -1.68 16 2 C -0.09 -1.47 0.77 -154.39 -0.12 -1.59 16 3 C -0.13 -2.10 7.99 37.16 0.30 -1.81 16 4 C -0.10 -1.43 4.71 -26.69 -0.13 -1.56 16 5 C -0.13 -1.98 5.00 -26.83 -0.13 -2.11 16 6 C 0.16 2.80 3.00 -67.82 -0.20 2.59 16 7 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 8 C 0.14 2.30 4.42 -4.04 -0.02 2.28 16 9 N -0.68 -11.26 3.80 -60.29 -0.23 -11.49 16 10 C 0.52 7.83 7.83 -10.99 -0.09 7.75 16 11 O -0.57 -9.80 15.98 5.55 0.09 -9.71 16 12 C -0.16 -1.90 5.84 -27.88 -0.16 -2.06 16 13 C 0.13 1.29 5.77 -4.04 -0.02 1.26 16 14 N -0.31 -3.44 3.44 -62.55 -0.22 -3.66 16 15 C 0.16 1.50 12.79 -90.38 -1.16 0.34 16 16 N -0.31 -4.26 12.36 29.59 0.37 -3.90 16 17 N -0.08 -1.28 13.43 60.35 0.81 -0.47 16 18 N -0.08 -1.27 13.07 60.35 0.79 -0.48 16 19 N -0.59 -12.11 2.25 -165.03 -0.37 -12.48 16 20 C -0.35 -7.99 6.85 -15.06 -0.10 -8.10 16 21 H 0.06 1.46 5.89 -52.49 -0.31 1.16 16 22 C -0.01 -0.35 4.72 -17.43 -0.08 -0.44 16 23 N -0.91 -24.25 12.51 55.49 0.69 -23.56 16 24 Si 1.05 23.80 29.98 -169.99 -5.10 18.71 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.17 3.36 3.37 -3.71 -0.01 3.35 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.24 5.97 -51.93 -0.31 0.93 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.28 7.46 -51.93 -0.39 0.89 16 41 H 0.42 7.34 7.33 -40.82 -0.30 7.04 16 42 H 0.12 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.12 0.84 8.04 -51.93 -0.42 0.42 16 45 H 0.12 1.18 8.10 -51.93 -0.42 0.76 16 46 H 0.23 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.27 7.19 6.65 -40.82 -0.27 6.91 16 48 H 0.02 0.32 7.83 -51.93 -0.41 -0.08 16 49 H 0.08 1.84 6.46 -51.93 -0.34 1.51 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -29.62 385.52 -6.75 -36.37 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.78 Total: 6.61 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.61 Total: -1.76 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 1.84 Total: -56.02 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.10 Total: 18.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.62 -6.75 -36.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099280685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.977 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds