Wall clock time and date at job start Tue Mar 31 2020 19:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.49548 * 2 1 4 4 C 1.53041 * 109.49704 * 239.90532 * 2 1 3 5 5 C 1.53043 * 109.53491 * 178.68419 * 4 2 1 6 6 C 1.52760 * 109.38304 * 61.24003 * 5 4 2 7 7 H 1.08995 * 109.43556 * 65.42612 * 6 5 4 8 8 C 1.53001 * 109.50643 * 185.70573 * 6 5 4 9 9 N 1.46505 * 109.47161 * 179.07974 * 8 6 5 10 10 C 1.34770 * 120.00002 * 180.02562 * 9 8 6 11 11 O 1.21286 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00187 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.47598 * 179.97438 * 12 10 9 14 14 N 1.46501 * 109.47148 * 179.97438 * 13 12 10 15 15 C 1.34606 * 126.43071 * 124.71601 * 14 13 12 16 16 N 1.31068 * 106.67476 * 179.88030 * 15 14 13 17 17 N 1.28848 * 107.99367 * 0.38376 * 16 15 14 18 18 N 1.28736 * 109.39142 * 359.75745 * 17 16 15 19 19 N 1.46929 * 109.00631 * 305.58279 * 6 5 4 20 20 C 1.36939 * 120.63085 * 233.58218 * 19 6 5 21 21 H 1.08001 * 119.99751 * 30.57800 * 20 19 6 22 22 C 1.38806 * 120.00119 * 210.56849 * 20 19 6 23 23 N 1.31617 * 119.99953 * 22.96228 * 22 20 19 24 24 Si 1.86803 * 120.00009 * 202.95834 * 22 20 19 25 25 H 1.48500 * 109.47149 * 240.00138 * 24 22 20 26 26 H 1.48492 * 109.47268 * 0.02562 * 24 22 20 27 27 H 1.48504 * 109.46838 * 120.00520 * 24 22 20 28 28 C 1.46925 * 118.73619 * 53.31567 * 19 6 5 29 29 H 1.08992 * 109.46877 * 299.93175 * 1 2 3 30 30 H 1.08998 * 109.46731 * 59.93712 * 1 2 3 31 31 H 1.08999 * 109.46909 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46948 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47394 * 300.06235 * 3 2 1 34 34 H 1.09005 * 109.47229 * 60.06477 * 3 2 1 35 35 H 1.09005 * 109.45698 * 298.70056 * 4 2 1 36 36 H 1.08996 * 109.46298 * 58.65895 * 4 2 1 37 37 H 1.09000 * 109.49741 * 181.31404 * 5 4 2 38 38 H 1.08998 * 109.49410 * 301.41171 * 5 4 2 39 39 H 1.08996 * 109.47185 * 299.07803 * 8 6 5 40 40 H 1.09000 * 109.47159 * 59.08101 * 8 6 5 41 41 H 0.97002 * 119.99777 * 0.02562 * 9 8 6 42 42 H 1.09009 * 109.47069 * 299.99943 * 12 10 9 43 43 H 1.09001 * 109.47031 * 59.99362 * 12 10 9 44 44 H 1.08993 * 109.47341 * 300.00517 * 13 12 10 45 45 H 1.09000 * 109.46793 * 60.00130 * 13 12 10 46 46 H 1.07999 * 126.65950 * 0.02562 * 15 14 13 47 47 H 0.96999 * 120.00292 * 5.44479 * 23 22 20 48 48 H 1.09000 * 109.58866 * 66.43025 * 28 19 6 49 49 H 1.08999 * 109.58663 * 186.70886 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0409 -0.7234 -1.2482 5 6 3.5709 -0.6953 -1.2658 6 6 4.1055 -1.4216 -0.0328 7 1 3.8413 -2.4774 -0.0908 8 6 5.6271 -1.2732 0.0278 9 7 6.1367 -1.9514 1.2223 10 6 7.4587 -1.9518 1.4846 11 8 8.2266 -1.3912 0.7315 12 6 7.9830 -2.6498 2.7130 13 6 9.5046 -2.5014 2.7737 14 7 10.0141 -3.1795 3.9682 15 6 10.9589 -4.1377 4.0016 16 7 11.1170 -4.4661 5.2606 17 7 10.3056 -3.7530 5.9629 18 7 9.6377 -2.9745 5.1850 19 7 3.5046 -0.8287 1.1698 20 6 4.2936 -0.3778 2.1942 21 1 5.2801 0.0093 1.9859 22 6 3.8255 -0.4182 3.5003 23 7 2.8711 -1.2618 3.8316 24 14 4.5500 0.7249 4.7880 25 1 5.1468 -0.0794 5.8843 26 1 5.6003 1.5698 4.1650 27 1 3.4783 1.5934 5.3381 28 6 2.0414 -0.7234 1.2498 29 1 -0.3633 0.5127 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6767 1.9566 -0.8894 34 1 1.6785 1.9560 0.8906 35 1 1.6968 -1.7576 -1.2348 36 1 1.6582 -0.2251 -2.1389 37 1 3.9336 -1.1902 -2.1667 38 1 3.9159 0.3386 -1.2541 39 1 6.0715 -1.7206 -0.8613 40 1 5.8877 -0.2157 0.0714 41 1 5.5227 -2.4000 1.8244 42 1 7.5382 -2.2032 3.6023 43 1 7.7229 -3.7074 2.6688 44 1 9.9490 -2.9482 1.8844 45 1 9.7650 -1.4439 2.8177 46 1 11.4860 -4.5532 3.1556 47 1 2.5499 -1.9092 3.1845 48 1 1.6053 -1.7212 1.2985 49 1 1.7637 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099280685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:49 Heat of formation + Delta-G solvation = 75.077540 kcal Electronic energy + Delta-G solvation = -30428.766527 eV Core-core repulsion = 26428.268334 eV Total energy + Delta-G solvation = -4000.498193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.18294 -41.02796 -40.11542 -37.18955 -36.60538 -35.24940 -33.82902 -33.52729 -32.44047 -31.55583 -29.08494 -28.11218 -27.28526 -26.81232 -24.90996 -24.71573 -23.82930 -23.21844 -21.84504 -21.13937 -19.49726 -19.17655 -18.71869 -18.08684 -17.39543 -17.26055 -16.82268 -16.65186 -16.41552 -15.99717 -15.57283 -15.38382 -15.04705 -14.86288 -14.78712 -14.52923 -14.06887 -13.95203 -13.72041 -13.62700 -13.46286 -13.22660 -13.01506 -12.81998 -12.70832 -12.56651 -12.51433 -12.33008 -12.22896 -12.20515 -11.99066 -11.87604 -11.76349 -11.65960 -11.38162 -11.37097 -11.10441 -10.96244 -10.76155 -10.41423 -9.85172 -8.75956 -8.05345 -5.28480 0.27817 1.01969 1.22455 1.57814 1.58255 1.65291 1.73531 2.38677 2.62986 3.26651 3.29697 3.48092 3.52044 3.57745 3.83849 3.88346 3.91861 3.94530 4.09384 4.24069 4.24845 4.34239 4.36771 4.45691 4.48276 4.59129 4.65788 4.71048 4.76722 4.81737 4.84554 4.87884 4.97975 5.01839 5.06465 5.09355 5.15558 5.25048 5.25232 5.29162 5.43193 5.46785 5.56778 5.62162 5.73772 6.05331 6.51792 6.66644 7.14630 7.26292 7.56056 7.87134 8.35132 9.15810 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.003254 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.127311 B = 8603.933458 C = 9765.758797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.161 3.839 7 H 0.029 0.971 8 C 0.143 3.857 9 N -0.693 5.693 10 C 0.519 3.481 11 O -0.585 6.585 12 C -0.150 4.150 13 C 0.137 3.863 14 N -0.303 5.303 15 C 0.184 3.816 16 N -0.344 5.344 17 N -0.113 5.113 18 N -0.118 5.118 19 N -0.603 5.603 20 C -0.314 4.314 21 H 0.053 0.947 22 C -0.057 4.057 23 N -0.946 5.946 24 Si 1.084 2.916 25 H -0.297 1.297 26 H -0.282 1.282 27 H -0.298 1.298 28 C 0.174 3.826 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.410 0.590 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.161 0.839 45 H 0.110 0.890 46 H 0.292 0.708 47 H 0.260 0.740 48 H 0.000 1.000 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -3.547 -12.515 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.175 4.175 4 C -0.129 4.129 5 C -0.164 4.164 6 C 0.055 3.945 7 H 0.047 0.953 8 C 0.019 3.981 9 N -0.341 5.341 10 C 0.305 3.695 11 O -0.467 6.467 12 C -0.191 4.191 13 C 0.017 3.983 14 N -0.105 5.105 15 C -0.114 4.114 16 N -0.192 5.192 17 N -0.107 5.107 18 N -0.105 5.105 19 N -0.327 5.327 20 C -0.444 4.444 21 H 0.071 0.929 22 C -0.256 4.256 23 N -0.588 5.588 24 Si 0.913 3.087 25 H -0.224 1.224 26 H -0.208 1.208 27 H -0.225 1.225 28 C 0.048 3.952 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.246 0.754 42 H 0.113 0.887 43 H 0.136 0.864 44 H 0.179 0.821 45 H 0.129 0.871 46 H 0.307 0.693 47 H 0.070 0.930 48 H 0.017 0.983 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.846 -2.554 -10.083 12.452 hybrid contribution -0.449 -0.455 -1.519 1.648 sum 6.396 -3.009 -11.602 13.586 Atomic orbital electron populations 1.21743 0.94148 1.01468 1.01548 1.21052 0.95325 0.95989 0.96422 1.21627 1.00871 0.95071 0.99969 1.21391 0.95012 0.99756 0.96724 1.21880 0.96286 1.00943 0.97326 1.20777 0.90652 0.95010 0.88012 0.95302 1.21216 0.93413 0.96526 0.86980 1.46038 1.07168 1.54174 1.26740 1.20304 0.82438 0.80308 0.86466 1.90660 1.57087 1.47748 1.51248 1.21786 0.95579 1.04068 0.97664 1.22157 0.93598 1.00211 0.82329 1.48967 1.26739 1.27185 1.07656 1.28756 0.92776 0.90245 0.99575 1.74906 1.19654 1.22213 1.02463 1.78648 1.04339 1.03958 1.23768 1.78925 1.21247 1.20967 0.89361 1.44253 1.01224 1.70537 1.16735 1.19920 1.00591 1.36991 0.86914 0.92917 1.26258 1.00083 1.00982 0.98272 1.70810 1.32309 1.18428 1.37297 0.83222 0.75156 0.75384 0.74903 1.22395 1.20789 1.22509 1.20806 0.83667 0.95173 0.95557 0.94068 0.91059 0.92913 0.93392 0.91980 0.95300 0.92671 0.90677 0.90024 0.92220 0.90566 0.93739 0.75390 0.88719 0.86413 0.82118 0.87135 0.69318 0.92953 0.98255 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 8.48 71.99 0.61 -3.02 16 2 C -0.09 -2.75 0.77 -52.10 -0.04 -2.79 16 3 C -0.12 -3.83 7.99 71.98 0.57 -3.25 16 4 C -0.09 -2.44 4.71 30.62 0.14 -2.29 16 5 C -0.13 -3.44 5.00 30.53 0.15 -3.28 16 6 C 0.16 5.36 3.00 44.83 0.13 5.49 16 7 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 8 C 0.14 4.60 4.42 86.38 0.38 4.98 16 9 N -0.69 -22.41 3.80 -463.06 -1.76 -24.17 16 10 C 0.52 15.12 7.83 87.66 0.69 15.81 16 11 O -0.58 -19.10 15.98 -3.05 -0.05 -19.15 16 12 C -0.15 -3.42 5.84 29.85 0.17 -3.25 16 13 C 0.14 2.34 5.77 86.38 0.50 2.84 16 14 N -0.30 -6.25 3.44 -351.82 -1.21 -7.46 16 15 C 0.18 2.97 12.79 180.27 2.31 5.28 16 16 N -0.34 -8.97 12.36 -60.29 -0.74 -9.72 16 17 N -0.11 -3.62 13.43 37.01 0.50 -3.13 16 18 N -0.12 -3.53 13.07 37.02 0.48 -3.05 16 19 N -0.60 -24.84 2.25 -676.04 -1.52 -26.36 16 20 C -0.31 -14.67 6.85 84.03 0.58 -14.10 16 21 H 0.05 2.56 5.89 -2.91 -0.02 2.55 16 22 C -0.06 -2.94 4.72 84.86 0.40 -2.53 16 23 N -0.95 -52.38 12.51 21.65 0.27 -52.11 16 24 Si 1.08 49.76 29.98 68.60 2.06 51.82 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 C 0.17 7.19 3.37 86.36 0.29 7.48 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.72 5.97 -2.39 -0.01 1.71 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.00 8.14 -2.38 -0.02 0.99 16 35 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.76 6.34 -2.39 -0.02 1.74 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.65 7.46 -2.39 -0.02 1.63 16 41 H 0.41 14.50 7.33 -92.71 -0.68 13.82 16 42 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 43 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.16 1.51 8.04 -2.39 -0.02 1.49 16 45 H 0.11 2.06 8.10 -2.39 -0.02 2.04 16 46 H 0.29 0.66 8.06 -2.91 -0.02 0.64 16 47 H 0.26 14.46 6.65 -92.71 -0.62 13.84 16 48 H 0.00 -0.02 7.83 -2.39 -0.02 -0.04 16 49 H 0.04 1.84 6.46 -2.39 -0.02 1.83 16 Total: -1.00 -68.43 385.52 5.35 -63.08 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.43 Total: 22.89 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.89 Total: 7.35 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -3.98 Total: -125.99 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.06 Total: 51.82 kcal Total: -68.43 5.35 -63.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099280685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.157 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds