Wall clock time and date at job start Tue Mar 31 2020 19:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47132 * 2 1 4 4 C 1.52998 * 109.46947 * 239.99847 * 2 1 3 5 5 N 1.46502 * 109.46996 * 120.00293 * 2 1 3 6 6 N 1.28781 * 125.44900 * 359.97292 * 5 2 1 7 7 N 1.29000 * 108.72486 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35641 * 359.97438 * 7 6 5 9 9 C 1.50690 * 126.55041 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47185 * 90.02853 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 C 1.53779 * 113.61429 * 274.13402 * 14 13 12 16 16 C 1.53959 * 87.01850 * 220.04687 * 15 14 13 17 17 N 1.46496 * 113.74044 * 139.94696 * 16 15 14 18 18 C 1.36931 * 120.00273 * 107.40143 * 17 16 15 19 19 H 1.08004 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00287 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99593 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47320 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46965 * 120.00657 * 22 20 18 25 25 H 1.48498 * 109.46998 * 240.00156 * 22 20 18 26 26 C 1.53779 * 113.61296 * 176.52389 * 14 13 12 27 27 N 1.28889 * 125.44798 * 180.31191 * 5 2 1 28 28 H 1.08994 * 109.47147 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.47029 * 59.99994 * 1 2 3 30 30 H 1.08999 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46874 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47459 * 299.99743 * 3 2 1 33 33 H 1.09002 * 109.46909 * 60.00424 * 3 2 1 34 34 H 1.08999 * 109.47598 * 299.99989 * 4 2 1 35 35 H 1.08993 * 109.47126 * 60.00574 * 4 2 1 36 36 H 1.09002 * 109.47020 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47343 * 330.03119 * 9 8 7 38 38 H 1.08998 * 109.47656 * 210.02976 * 9 8 7 39 39 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 40 40 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 41 41 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 42 42 H 1.09003 * 112.84550 * 45.33599 * 14 13 12 43 43 H 1.08994 * 113.61750 * 334.57143 * 15 14 13 44 44 H 1.09007 * 113.60960 * 105.47471 * 15 14 13 45 45 H 1.09005 * 113.53954 * 270.81365 * 16 15 14 46 46 H 0.97004 * 119.99983 * 287.40080 * 17 16 15 47 47 H 0.97004 * 119.99539 * 180.02562 * 21 20 18 48 48 H 1.09003 * 113.61684 * 254.52851 * 26 14 13 49 49 H 1.08995 * 113.61332 * 25.43891 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 7 1.2782 -1.2172 2.1091 7 7 2.0399 -1.7375 3.0108 8 6 3.3017 -1.5230 2.6376 9 6 4.5419 -1.9514 3.3786 10 6 4.9549 -3.3246 2.9149 11 8 4.3057 -3.8989 2.0666 12 7 6.0451 -3.9148 3.4437 13 6 6.4469 -5.2495 2.9925 14 6 7.7097 -5.6820 3.7404 15 6 9.0117 -5.1894 3.0870 16 6 9.6078 -6.5684 3.4237 17 7 10.4588 -7.1175 2.3652 18 6 11.8173 -7.1598 2.5317 19 1 12.2614 -6.7888 3.4436 20 6 12.6236 -7.6806 1.5289 21 7 12.0823 -8.1333 0.4178 22 14 14.4768 -7.7390 1.7564 23 1 14.8307 -7.1738 3.0832 24 1 14.9408 -9.1474 1.6791 25 1 15.1319 -6.9426 0.6879 26 6 8.1685 -7.1097 3.4001 27 7 3.2574 -0.8631 1.5063 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1391 36 1 3.1300 -0.7217 -1.2490 37 1 4.3356 -1.9761 4.4486 38 1 5.3467 -1.2436 3.1800 39 1 6.5662 -3.4541 4.1198 40 1 5.6440 -5.9583 3.1949 41 1 6.6490 -5.2255 1.9217 42 1 7.6562 -5.4840 4.8109 43 1 8.9199 -5.0028 2.0171 44 1 9.4844 -4.3659 3.6223 45 1 10.0747 -6.6123 4.4077 46 1 10.0599 -7.4511 1.5463 47 1 12.6457 -8.4975 -0.2827 48 1 7.9616 -7.8343 4.1878 49 1 7.8458 -7.4491 2.4159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100356119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:11 Heat of formation + Delta-G solvation = 111.818265 kcal Electronic energy + Delta-G solvation = -28149.284632 eV Core-core repulsion = 24150.379637 eV Total energy + Delta-G solvation = -3998.904996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.52524 -39.86870 -38.48447 -37.98666 -34.72234 -33.77664 -33.42561 -33.25582 -30.53857 -29.79217 -28.10709 -28.05078 -27.00307 -25.09159 -24.81055 -23.92338 -22.79010 -21.06623 -20.95934 -20.56728 -19.06550 -17.72707 -17.41771 -17.07190 -16.78099 -16.34280 -15.65548 -15.11665 -14.82127 -14.74472 -14.65896 -14.37868 -14.00376 -13.84717 -13.65516 -13.47377 -13.32506 -13.04456 -12.96998 -12.88390 -12.44784 -12.40339 -12.14332 -12.02743 -11.88861 -11.80670 -11.60041 -11.39708 -11.23484 -11.07773 -11.00529 -10.86068 -10.55480 -10.46301 -10.24192 -10.11282 -9.83361 -9.83160 -9.48906 -9.05637 -8.87729 -6.96747 -5.79025 -3.07814 1.08861 1.59647 1.94954 2.52089 3.10333 3.41865 3.47375 3.49823 3.55838 3.82860 3.98249 4.08765 4.29999 4.57680 4.60600 4.82307 4.86793 4.90356 4.93708 4.97639 5.01991 5.02233 5.07785 5.10663 5.19256 5.23158 5.38227 5.43515 5.46334 5.51129 5.52964 5.58855 5.73324 5.82521 5.85125 5.93531 6.04596 6.09030 6.24955 6.31236 6.35936 6.43941 6.58976 6.82590 7.11267 7.40060 7.68913 8.11484 8.22874 8.39544 9.50625 10.09206 10.43217 11.43414 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.001717 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.698236 B =16301.769177 C =17018.671064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 C -0.158 4.158 4 C -0.160 4.160 5 N -0.129 5.129 6 N -0.063 5.063 7 N -0.278 5.278 8 C 0.185 3.815 9 C -0.045 4.045 10 C 0.518 3.482 11 O -0.534 6.534 12 N -0.721 5.721 13 C 0.133 3.867 14 C -0.127 4.127 15 C -0.161 4.161 16 C 0.165 3.835 17 N -0.713 5.713 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.142 4.142 27 N -0.294 5.294 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.402 0.598 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.062 0.938 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.156 20.665 2.776 31.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.216 4.216 4 C -0.218 4.218 5 N -0.043 5.043 6 N -0.055 5.055 7 N -0.148 5.148 8 C -0.098 4.098 9 C -0.088 4.088 10 C 0.301 3.699 11 O -0.411 6.411 12 N -0.373 5.373 13 C 0.010 3.990 14 C -0.146 4.146 15 C -0.202 4.202 16 C 0.053 3.947 17 N -0.351 5.351 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.182 4.182 27 N -0.144 5.144 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.076 20.307 2.043 31.562 hybrid contribution 1.669 -0.017 0.160 1.676 sum -22.407 20.290 2.203 30.309 Atomic orbital electron populations 1.22087 0.90104 1.04684 1.04183 1.21393 0.96420 0.92669 0.79753 1.22227 1.03355 0.92073 1.03953 1.22240 1.03477 1.01218 0.94873 1.50424 1.01098 1.34787 1.18001 1.78885 1.21944 1.09194 0.95503 1.75792 1.00721 1.18071 1.20262 1.24574 0.94818 0.98591 0.91828 1.19862 0.92107 0.95970 1.00817 1.20120 0.80789 0.86916 0.82030 1.90748 1.53273 1.65286 1.31754 1.45942 1.28343 1.19596 1.43420 1.21452 0.96289 0.82093 0.99184 1.22639 0.93498 0.99104 0.99350 1.23973 0.94941 1.00870 1.00437 1.21557 0.88628 0.91178 0.93312 1.42420 1.03271 1.72256 1.17112 1.19355 0.83031 1.33977 1.01111 0.91018 1.24781 0.98116 1.01550 0.96565 1.69677 1.34144 1.47031 1.07138 0.86115 0.85602 0.77227 0.77224 1.20525 1.21857 1.21876 1.23444 0.98887 0.94295 1.01596 1.74547 1.03301 1.20420 1.16139 0.90651 0.89256 0.90553 0.90372 0.89155 0.91470 0.91253 0.89184 0.90324 0.85611 0.85874 0.76365 0.91702 0.91218 0.89270 0.90390 0.92714 0.90663 0.78075 0.93506 0.91964 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 7.91 37.16 0.29 -0.47 16 2 C 0.18 1.22 1.30 -131.82 -0.17 1.05 16 3 C -0.16 -0.76 8.66 37.16 0.32 -0.44 16 4 C -0.16 -1.01 8.67 37.16 0.32 -0.69 16 5 N -0.13 -1.43 3.73 0.48 0.00 -1.42 16 6 N -0.06 -0.81 12.24 60.35 0.74 -0.07 16 7 N -0.28 -3.89 12.50 32.44 0.41 -3.48 16 8 C 0.19 2.33 6.86 -156.63 -1.07 1.25 16 9 C -0.04 -0.40 6.33 -29.04 -0.18 -0.59 16 10 C 0.52 6.46 7.82 -10.98 -0.09 6.38 16 11 O -0.53 -9.32 16.03 5.56 0.09 -9.23 16 12 N -0.72 -7.67 5.56 -60.29 -0.33 -8.01 16 13 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 14 C -0.13 -1.63 3.75 -89.81 -0.34 -1.97 16 15 C -0.16 -2.58 7.45 -25.83 -0.19 -2.78 16 16 C 0.17 3.15 4.48 -67.02 -0.30 2.85 16 17 N -0.71 -17.70 5.41 -52.54 -0.28 -17.98 16 18 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C -0.14 -2.24 7.40 -25.92 -0.19 -2.43 16 27 N -0.29 -3.64 11.83 32.46 0.38 -3.25 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.13 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.40 2.99 8.47 -40.82 -0.35 2.65 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 44 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 45 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 46 H 0.39 10.23 7.92 -40.82 -0.32 9.90 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -36.59 409.44 -7.21 -43.80 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.22 Total: 7.18 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.87 Total: -3.50 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 1.64 Total: -61.67 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.59 -7.21 -43.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100356119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.622 kcal (2) G-P(sol) polarization free energy of solvation -36.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds