Wall clock time and date at job start Tue Mar 31 2020 19:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47132 * 2 1 4 4 C 1.52998 * 109.46947 * 239.99847 * 2 1 3 5 5 N 1.46502 * 109.46996 * 120.00293 * 2 1 3 6 6 N 1.28781 * 125.44900 * 359.97292 * 5 2 1 7 7 N 1.29000 * 108.72486 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35641 * 359.97438 * 7 6 5 9 9 C 1.50690 * 126.55041 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47185 * 90.02853 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 C 1.53779 * 113.61429 * 274.13402 * 14 13 12 16 16 C 1.53959 * 87.01850 * 220.04687 * 15 14 13 17 17 N 1.46496 * 113.74044 * 139.94696 * 16 15 14 18 18 C 1.36931 * 120.00273 * 107.40143 * 17 16 15 19 19 H 1.08004 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00287 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99593 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47320 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46965 * 120.00657 * 22 20 18 25 25 H 1.48498 * 109.46998 * 240.00156 * 22 20 18 26 26 C 1.53779 * 113.61296 * 176.52389 * 14 13 12 27 27 N 1.28889 * 125.44798 * 180.31191 * 5 2 1 28 28 H 1.08994 * 109.47147 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.47029 * 59.99994 * 1 2 3 30 30 H 1.08999 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46874 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47459 * 299.99743 * 3 2 1 33 33 H 1.09002 * 109.46909 * 60.00424 * 3 2 1 34 34 H 1.08999 * 109.47598 * 299.99989 * 4 2 1 35 35 H 1.08993 * 109.47126 * 60.00574 * 4 2 1 36 36 H 1.09002 * 109.47020 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47343 * 330.03119 * 9 8 7 38 38 H 1.08998 * 109.47656 * 210.02976 * 9 8 7 39 39 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 40 40 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 41 41 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 42 42 H 1.09003 * 112.84550 * 45.33599 * 14 13 12 43 43 H 1.08994 * 113.61750 * 334.57143 * 15 14 13 44 44 H 1.09007 * 113.60960 * 105.47471 * 15 14 13 45 45 H 1.09005 * 113.53954 * 270.81365 * 16 15 14 46 46 H 0.97004 * 119.99983 * 287.40080 * 17 16 15 47 47 H 0.97004 * 119.99539 * 180.02562 * 21 20 18 48 48 H 1.09003 * 113.61684 * 254.52851 * 26 14 13 49 49 H 1.08995 * 113.61332 * 25.43891 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 7 1.2782 -1.2172 2.1091 7 7 2.0399 -1.7375 3.0108 8 6 3.3017 -1.5230 2.6376 9 6 4.5419 -1.9514 3.3786 10 6 4.9549 -3.3246 2.9149 11 8 4.3057 -3.8989 2.0666 12 7 6.0451 -3.9148 3.4437 13 6 6.4469 -5.2495 2.9925 14 6 7.7097 -5.6820 3.7404 15 6 9.0117 -5.1894 3.0870 16 6 9.6078 -6.5684 3.4237 17 7 10.4588 -7.1175 2.3652 18 6 11.8173 -7.1598 2.5317 19 1 12.2614 -6.7888 3.4436 20 6 12.6236 -7.6806 1.5289 21 7 12.0823 -8.1333 0.4178 22 14 14.4768 -7.7390 1.7564 23 1 14.8307 -7.1738 3.0832 24 1 14.9408 -9.1474 1.6791 25 1 15.1319 -6.9426 0.6879 26 6 8.1685 -7.1097 3.4001 27 7 3.2574 -0.8631 1.5063 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1391 36 1 3.1300 -0.7217 -1.2490 37 1 4.3356 -1.9761 4.4486 38 1 5.3467 -1.2436 3.1800 39 1 6.5662 -3.4541 4.1198 40 1 5.6440 -5.9583 3.1949 41 1 6.6490 -5.2255 1.9217 42 1 7.6562 -5.4840 4.8109 43 1 8.9199 -5.0028 2.0171 44 1 9.4844 -4.3659 3.6223 45 1 10.0747 -6.6123 4.4077 46 1 10.0599 -7.4511 1.5463 47 1 12.6457 -8.4975 -0.2827 48 1 7.9616 -7.8343 4.1878 49 1 7.8458 -7.4491 2.4159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100356119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:09 Heat of formation + Delta-G solvation = 84.592631 kcal Electronic energy + Delta-G solvation = -28150.465224 eV Core-core repulsion = 24150.379637 eV Total energy + Delta-G solvation = -4000.085588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.39512 -40.92953 -39.77992 -38.59758 -36.07069 -35.01738 -34.65582 -34.17914 -32.24011 -30.86873 -28.63783 -28.53774 -28.11555 -26.43573 -25.82577 -25.60431 -23.77310 -22.40412 -21.76767 -21.48729 -20.44481 -19.06292 -18.58880 -18.07814 -17.71886 -17.36937 -16.65173 -16.60442 -16.17228 -15.60189 -15.46243 -15.22815 -15.19001 -15.00754 -14.86897 -14.55903 -14.46101 -14.02922 -13.46080 -13.43749 -13.24643 -13.23560 -13.20425 -13.01136 -12.91519 -12.87196 -12.85092 -12.64605 -12.57597 -12.17416 -12.15009 -12.04766 -11.95781 -11.87443 -11.61040 -11.53934 -11.35116 -11.08219 -10.84996 -10.75187 -10.09444 -8.96576 -7.94026 -5.22214 0.20815 0.91510 1.04479 1.47940 1.48642 1.57013 1.58775 2.20081 2.57389 2.81880 3.15064 3.38191 3.50609 3.58469 3.65712 3.69606 3.77929 3.81971 3.97566 4.21765 4.27906 4.37667 4.39610 4.44630 4.45132 4.50783 4.52500 4.58335 4.58969 4.68347 4.70481 4.71729 4.76627 4.81262 5.00030 5.00439 5.01340 5.07603 5.09519 5.20707 5.25252 5.34221 5.37344 5.44334 5.54590 5.76085 6.28523 6.53915 7.22520 7.32542 7.33740 8.12650 8.33973 9.29819 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.001717 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.698236 B =16301.769177 C =17018.671064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.162 3.838 3 C -0.151 4.151 4 C -0.156 4.156 5 N -0.120 5.120 6 N -0.078 5.078 7 N -0.308 5.308 8 C 0.173 3.827 9 C -0.038 4.038 10 C 0.516 3.484 11 O -0.591 6.591 12 N -0.705 5.705 13 C 0.139 3.861 14 C -0.093 4.093 15 C -0.152 4.152 16 C 0.142 3.858 17 N -0.731 5.731 18 C -0.240 4.240 19 H 0.081 0.919 20 C -0.082 4.082 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.296 1.296 25 H -0.296 1.296 26 C -0.139 4.139 27 N -0.308 5.308 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.422 0.578 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.127 0.873 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.078 0.922 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.389 22.956 4.426 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.083 3.917 3 C -0.210 4.210 4 C -0.215 4.215 5 N -0.036 5.036 6 N -0.071 5.071 7 N -0.178 5.178 8 C -0.110 4.110 9 C -0.080 4.080 10 C 0.302 3.698 11 O -0.472 6.472 12 N -0.357 5.357 13 C 0.015 3.985 14 C -0.112 4.112 15 C -0.193 4.193 16 C 0.032 3.968 17 N -0.368 5.368 18 C -0.372 4.372 19 H 0.099 0.901 20 C -0.274 4.274 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.179 4.179 27 N -0.159 5.159 28 H 0.090 0.910 29 H 0.143 0.857 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.178 0.822 38 H 0.173 0.827 39 H 0.260 0.740 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.318 22.649 3.790 33.447 hybrid contribution 1.659 -0.691 -0.372 1.835 sum -22.659 21.958 3.418 31.738 Atomic orbital electron populations 1.22130 0.88621 1.04157 1.05736 1.21987 0.97695 0.93552 0.78486 1.22240 1.02590 0.90650 1.05476 1.22261 1.02360 1.00611 0.96222 1.50937 1.00665 1.33711 1.18275 1.78798 1.22316 1.09857 0.96082 1.75737 1.01559 1.19170 1.21319 1.25200 0.95445 0.98354 0.92031 1.20063 0.91719 0.94082 1.02165 1.20701 0.80255 0.87815 0.81003 1.90733 1.55129 1.66916 1.34375 1.45741 1.27994 1.18672 1.43331 1.21202 0.96163 0.83383 0.97759 1.22470 0.91669 0.96072 1.00964 1.23735 0.96451 0.99527 0.99554 1.22020 0.89409 0.93220 0.92116 1.42655 1.03125 1.73004 1.18012 1.19797 0.84479 1.32000 1.00883 0.90095 1.25616 1.02576 1.02536 0.96666 1.69842 1.35421 1.49061 1.08123 0.85060 0.80318 0.76703 0.77624 1.18620 1.22301 1.22345 1.23338 0.96569 0.96531 1.01442 1.74520 1.04092 1.20973 1.16322 0.90999 0.85743 0.92104 0.91527 0.85813 0.91708 0.93217 0.85529 0.92001 0.82217 0.82679 0.73989 0.91985 0.93899 0.85528 0.92842 0.90868 0.89928 0.79771 0.94183 0.90328 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.91 71.98 0.57 -0.73 16 2 C 0.16 2.08 1.30 3.60 0.00 2.08 16 3 C -0.15 -1.20 8.66 71.98 0.62 -0.58 16 4 C -0.16 -1.88 8.67 71.98 0.62 -1.26 16 5 N -0.12 -2.66 3.73 -152.39 -0.57 -3.22 16 6 N -0.08 -2.05 12.24 37.02 0.45 -1.60 16 7 N -0.31 -8.67 12.50 -51.27 -0.64 -9.31 16 8 C 0.17 4.25 6.86 138.55 0.95 5.20 16 9 C -0.04 -0.61 6.33 29.10 0.18 -0.43 16 10 C 0.52 12.25 7.82 87.66 0.69 12.94 16 11 O -0.59 -20.91 16.03 -3.03 -0.05 -20.96 16 12 N -0.70 -13.34 5.56 -463.05 -2.57 -15.91 16 13 C 0.14 3.42 5.50 86.38 0.47 3.89 16 14 C -0.09 -2.15 3.75 -10.27 -0.04 -2.19 16 15 C -0.15 -4.62 7.45 31.18 0.23 -4.39 16 16 C 0.14 5.24 4.48 45.58 0.20 5.45 16 17 N -0.73 -36.69 5.41 -320.15 -1.73 -38.42 16 18 C -0.24 -13.20 9.97 84.04 0.84 -12.36 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 21 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 22 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 C -0.14 -4.21 7.40 31.12 0.23 -3.98 16 27 N -0.31 -7.60 11.83 -51.21 -0.61 -8.20 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.42 4.62 8.47 -92.70 -0.79 3.83 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.31 7.87 -2.39 -0.02 1.29 16 42 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 44 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.08 2.93 8.10 -2.38 -0.02 2.91 16 46 H 0.37 20.38 7.92 -92.71 -0.73 19.65 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.25 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 Total: -1.00 -84.01 409.44 2.09 -81.92 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.56 Total: 28.35 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.05 Total: -0.63 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -5.38 Total: -136.84 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -84.01 2.09 -81.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100356119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.514 kcal (2) G-P(sol) polarization free energy of solvation -84.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds