Wall clock time and date at job start Tue Mar 31 2020 20:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.53005 * 109.46898 * 240.00229 * 2 1 3 5 5 N 1.46493 * 109.47102 * 60.00044 * 4 2 1 6 6 C 1.36938 * 119.99912 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00141 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00222 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99973 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47382 * 60.00532 * 10 8 6 12 12 H 1.48503 * 109.47042 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47310 * 299.99823 * 10 8 6 14 14 C 1.52998 * 109.46978 * 120.00605 * 2 1 3 15 15 C 1.53046 * 109.45875 * 299.99786 * 14 2 1 16 16 C 1.53196 * 109.31366 * 181.37407 * 15 14 2 17 17 N 1.46925 * 108.77419 * 305.36458 * 16 15 14 18 18 C 1.34777 * 120.62933 * 233.58799 * 17 16 15 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99928 * 180.27723 * 18 17 16 21 21 N 1.46491 * 109.46957 * 179.72354 * 20 18 17 22 22 C 1.34602 * 126.44155 * 124.71281 * 21 20 18 23 23 N 1.31065 * 106.68084 * 179.87477 * 22 21 20 24 24 N 1.28845 * 107.99522 * 0.38588 * 23 22 21 25 25 N 1.28743 * 109.39022 * 359.75166 * 24 23 22 26 26 C 1.46931 * 118.73924 * 53.85839 * 17 16 15 27 27 C 1.53036 * 109.45277 * 60.05936 * 14 2 1 28 28 H 1.08997 * 109.46639 * 299.99985 * 1 2 3 29 29 H 1.09007 * 109.46815 * 59.99610 * 1 2 3 30 30 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47109 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47070 * 300.00153 * 3 2 1 33 33 H 1.08998 * 109.46706 * 60.00433 * 3 2 1 34 34 H 1.08998 * 109.47149 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.47168 * 299.99695 * 4 2 1 36 36 H 0.97000 * 120.00318 * 0.02562 * 5 4 2 37 37 H 0.96999 * 120.00105 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.45959 * 180.02562 * 14 2 1 39 39 H 1.08997 * 109.49431 * 61.41867 * 15 14 2 40 40 H 1.08999 * 109.52034 * 301.34387 * 15 14 2 41 41 H 1.08994 * 109.58453 * 185.57881 * 16 15 14 42 42 H 1.09001 * 109.70084 * 65.22264 * 16 15 14 43 43 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 44 44 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 45 45 H 1.08003 * 126.65643 * 0.02562 * 22 21 20 46 46 H 1.09000 * 109.58052 * 65.92898 * 26 17 16 47 47 H 1.08995 * 109.58699 * 186.35097 * 26 17 16 48 48 H 1.09003 * 109.49561 * 298.57476 * 27 14 2 49 49 H 1.08996 * 109.50266 * 58.63522 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0306 -2.4454 6 6 1.8829 -0.4981 -3.6891 7 1 2.5038 -1.3762 -3.7883 8 6 1.4206 0.1566 -4.8226 9 7 0.6644 1.2271 -4.7018 10 14 1.8719 -0.4816 -6.5191 11 1 1.3679 -1.8696 -6.6761 12 1 1.2583 0.3883 -7.5546 13 1 3.3486 -0.4704 -6.6756 14 6 2.0400 -0.7214 1.2492 15 6 1.5297 0.0002 2.4986 16 6 2.0703 -0.7044 3.7469 17 7 1.7080 -2.1268 3.6813 18 6 1.0550 -2.7169 4.7021 19 8 0.7614 -2.0730 5.6871 20 6 0.6959 -4.1783 4.6224 21 7 0.0028 -4.5783 5.8494 22 6 -1.2087 -5.1593 5.9302 23 7 -1.4502 -5.3503 7.2042 24 7 -0.4433 -4.9022 7.8716 25 7 0.4365 -4.4350 7.0560 26 6 2.0763 -2.8951 2.4843 27 6 1.5309 -2.1646 1.2478 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1300 -0.7217 -1.2491 35 1 1.6767 -1.7490 -1.2493 36 1 0.9943 0.7583 -2.3564 37 1 0.3416 1.6848 -5.4938 38 1 3.1300 -0.7209 1.2492 39 1 0.4400 -0.0215 2.5117 40 1 1.8729 1.0347 2.4874 41 1 1.6314 -0.2563 4.6383 42 1 3.1551 -0.6049 3.7843 43 1 0.0434 -4.3458 3.7654 44 1 1.6042 -4.7699 4.5087 45 1 -1.8551 -5.4200 5.1051 46 1 3.1617 -2.9706 2.4183 47 1 1.6414 -3.8928 2.5424 48 1 0.4411 -2.1659 1.2727 49 1 1.8747 -2.6709 0.3459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101508496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:00 Heat of formation + Delta-G solvation = 98.207625 kcal Electronic energy + Delta-G solvation = -29695.308651 eV Core-core repulsion = 25695.813454 eV Total energy + Delta-G solvation = -3999.495197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.48143 -40.85923 -39.08374 -36.53016 -35.79889 -33.93358 -32.77911 -32.00744 -31.48601 -30.23376 -29.22613 -27.00944 -26.09045 -25.39383 -24.15804 -23.99435 -23.13791 -22.65215 -21.32670 -19.69295 -18.52245 -18.13766 -17.92011 -17.26229 -16.79738 -16.49171 -16.11534 -15.82352 -14.89932 -14.80723 -14.51287 -14.42061 -14.22013 -13.93195 -13.77087 -13.51440 -13.24509 -12.90610 -12.89217 -12.73462 -12.50027 -12.42513 -11.94979 -11.79115 -11.66687 -11.52464 -11.44781 -11.32884 -11.06222 -10.96397 -10.89446 -10.80377 -10.73382 -10.38411 -10.27814 -10.24718 -10.11313 -9.78215 -9.61920 -9.08344 -8.90421 -6.94902 -5.81542 -3.09337 0.88810 1.41549 1.93485 1.98050 2.42619 3.38877 3.43656 3.44757 3.53409 3.78334 3.85176 4.13988 4.34739 4.40797 4.50861 4.57729 4.65707 4.78277 4.95379 4.99370 5.06366 5.17382 5.31883 5.34514 5.36980 5.41760 5.46628 5.55315 5.61876 5.65633 5.72894 5.81007 5.87320 5.93765 6.00528 6.05932 6.17413 6.22883 6.26751 6.28629 6.49807 6.63318 6.66284 6.79892 6.86179 6.88928 7.51542 7.63788 8.30397 8.38148 9.49132 10.08510 10.42355 11.41335 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.002160 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.153770 B =12962.455739 C =13572.261226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.139 4.139 4 C 0.163 3.837 5 N -0.729 5.729 6 C -0.239 4.239 7 H 0.068 0.932 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.287 1.287 14 C -0.072 4.072 15 C -0.132 4.132 16 C 0.113 3.887 17 N -0.601 5.601 18 C 0.503 3.497 19 O -0.515 6.515 20 C 0.095 3.905 21 N -0.301 5.301 22 C 0.161 3.839 23 N -0.307 5.307 24 N -0.079 5.079 25 N -0.064 5.064 26 C 0.101 3.899 27 C -0.136 4.136 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.019 0.981 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.236 0.764 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -10.273 16.537 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.196 4.196 4 C 0.035 3.965 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.086 0.914 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C -0.091 4.091 15 C -0.170 4.170 16 C -0.008 4.008 17 N -0.335 5.335 18 C 0.287 3.713 19 O -0.390 6.390 20 C -0.031 4.031 21 N -0.103 5.103 22 C -0.138 4.138 23 N -0.154 5.154 24 N -0.073 5.073 25 N -0.050 5.050 26 C -0.022 4.022 27 C -0.174 4.174 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.252 0.748 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.412 -9.947 18.323 20.897 hybrid contribution -0.033 -0.065 -2.381 2.382 sum 1.379 -10.012 15.942 18.876 Atomic orbital electron populations 1.21893 0.94726 1.01391 1.01528 1.20686 0.95825 0.95724 0.94238 1.21856 1.00581 0.95522 1.01621 1.20725 0.95757 0.94234 0.85769 1.42421 1.61328 1.33411 1.00293 1.19165 1.25593 1.08567 0.83691 0.91412 1.24725 1.00559 0.97954 0.97770 1.69638 1.39342 1.20800 1.28472 0.86287 0.77836 0.77825 0.84337 1.21341 1.21722 1.21336 1.21100 1.00131 0.93768 0.94130 1.22109 1.01734 0.99865 0.93304 1.21735 1.00165 0.78956 0.99984 1.48085 1.56508 1.11632 1.17263 1.20071 0.79204 0.88323 0.83652 1.90845 1.53049 1.64448 1.30622 1.22100 1.01174 0.96457 0.83328 1.48195 1.14617 1.39919 1.07577 1.27773 0.87981 0.98989 0.99014 1.74998 1.19882 1.19357 1.01154 1.78686 0.96076 1.10438 1.22136 1.79013 1.22535 1.16464 0.87015 1.22073 1.01133 0.94454 0.84506 1.22222 1.01768 0.96416 0.96999 0.93656 0.91579 0.93060 0.93139 0.91460 0.93513 0.96727 0.96345 0.78034 0.93475 0.90973 0.91053 0.89991 0.89053 0.91047 0.83796 0.84650 0.74792 0.90283 0.90183 0.90839 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.60 37.16 0.28 -1.62 16 2 C -0.06 -0.86 0.33 -154.51 -0.05 -0.91 16 3 C -0.14 -1.96 7.95 37.16 0.30 -1.66 16 4 C 0.16 2.86 4.80 -4.04 -0.02 2.85 16 5 N -0.73 -17.05 5.00 -59.91 -0.30 -17.35 16 6 C -0.24 -6.35 9.99 -15.06 -0.15 -6.50 16 7 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 10 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 C -0.07 -0.69 1.51 -90.58 -0.14 -0.83 16 15 C -0.13 -1.16 4.65 -26.61 -0.12 -1.29 16 16 C 0.11 0.94 6.43 -3.71 -0.02 0.91 16 17 N -0.60 -4.34 2.97 -172.50 -0.51 -4.85 16 18 C 0.50 4.29 7.72 -10.98 -0.08 4.21 16 19 O -0.51 -6.96 15.11 5.55 0.08 -6.88 16 20 C 0.10 0.42 5.31 -5.20 -0.03 0.40 16 21 N -0.30 -2.51 3.19 -63.74 -0.20 -2.71 16 22 C 0.16 1.16 12.79 -90.39 -1.16 0.00 16 23 N -0.31 -3.57 12.36 29.59 0.37 -3.20 16 24 N -0.08 -1.09 13.43 60.35 0.81 -0.28 16 25 N -0.06 -0.80 12.28 60.35 0.74 -0.06 16 26 C 0.10 0.50 6.37 -3.48 -0.02 0.48 16 27 C -0.14 -1.05 4.66 -26.39 -0.12 -1.17 16 28 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 29 H 0.07 1.13 6.86 -51.92 -0.36 0.77 16 30 H 0.05 0.67 6.46 -51.93 -0.34 0.33 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.16 6.86 -51.93 -0.36 0.80 16 33 H 0.05 0.56 6.40 -51.93 -0.33 0.22 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.02 0.32 6.40 -51.92 -0.33 -0.01 16 36 H 0.38 9.50 5.36 -40.82 -0.22 9.28 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.69 6.51 -51.93 -0.34 0.36 16 40 H 0.08 0.72 6.36 -51.93 -0.33 0.39 16 41 H 0.09 0.90 7.00 -51.93 -0.36 0.54 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.14 0.04 7.64 -51.93 -0.40 -0.36 16 44 H 0.14 0.25 7.93 -51.93 -0.41 -0.16 16 45 H 0.24 0.33 8.06 -52.48 -0.42 -0.10 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.15 5.94 -51.93 -0.31 -0.16 16 48 H 0.07 0.60 6.51 -51.93 -0.34 0.26 16 49 H 0.09 0.75 6.36 -51.93 -0.33 0.42 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -36.80 377.83 -6.22 -43.02 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.17 Total: 2.17 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.44 Total: -5.63 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 1.63 Total: -55.03 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.08 Total: -6.88 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.80 -6.22 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101508496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.229 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds