Wall clock time and date at job start Tue Mar 31 2020 20:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.53005 * 109.46898 * 240.00229 * 2 1 3 5 5 N 1.46493 * 109.47102 * 60.00044 * 4 2 1 6 6 C 1.36938 * 119.99912 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00141 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00222 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99973 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47382 * 60.00532 * 10 8 6 12 12 H 1.48503 * 109.47042 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47310 * 299.99823 * 10 8 6 14 14 C 1.52998 * 109.46978 * 120.00605 * 2 1 3 15 15 C 1.53046 * 109.45875 * 299.99786 * 14 2 1 16 16 C 1.53196 * 109.31366 * 181.37407 * 15 14 2 17 17 N 1.46925 * 108.77419 * 305.36458 * 16 15 14 18 18 C 1.34777 * 120.62933 * 233.58799 * 17 16 15 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99928 * 180.27723 * 18 17 16 21 21 N 1.46491 * 109.46957 * 179.72354 * 20 18 17 22 22 C 1.34602 * 126.44155 * 124.71281 * 21 20 18 23 23 N 1.31065 * 106.68084 * 179.87477 * 22 21 20 24 24 N 1.28845 * 107.99522 * 0.38588 * 23 22 21 25 25 N 1.28743 * 109.39022 * 359.75166 * 24 23 22 26 26 C 1.46931 * 118.73924 * 53.85839 * 17 16 15 27 27 C 1.53036 * 109.45277 * 60.05936 * 14 2 1 28 28 H 1.08997 * 109.46639 * 299.99985 * 1 2 3 29 29 H 1.09007 * 109.46815 * 59.99610 * 1 2 3 30 30 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47109 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47070 * 300.00153 * 3 2 1 33 33 H 1.08998 * 109.46706 * 60.00433 * 3 2 1 34 34 H 1.08998 * 109.47149 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.47168 * 299.99695 * 4 2 1 36 36 H 0.97000 * 120.00318 * 0.02562 * 5 4 2 37 37 H 0.96999 * 120.00105 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.45959 * 180.02562 * 14 2 1 39 39 H 1.08997 * 109.49431 * 61.41867 * 15 14 2 40 40 H 1.08999 * 109.52034 * 301.34387 * 15 14 2 41 41 H 1.08994 * 109.58453 * 185.57881 * 16 15 14 42 42 H 1.09001 * 109.70084 * 65.22264 * 16 15 14 43 43 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 44 44 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 45 45 H 1.08003 * 126.65643 * 0.02562 * 22 21 20 46 46 H 1.09000 * 109.58052 * 65.92898 * 26 17 16 47 47 H 1.08995 * 109.58699 * 186.35097 * 26 17 16 48 48 H 1.09003 * 109.49561 * 298.57476 * 27 14 2 49 49 H 1.08996 * 109.50266 * 58.63522 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0306 -2.4454 6 6 1.8829 -0.4981 -3.6891 7 1 2.5038 -1.3762 -3.7883 8 6 1.4206 0.1566 -4.8226 9 7 0.6644 1.2271 -4.7018 10 14 1.8719 -0.4816 -6.5191 11 1 1.3679 -1.8696 -6.6761 12 1 1.2583 0.3883 -7.5546 13 1 3.3486 -0.4704 -6.6756 14 6 2.0400 -0.7214 1.2492 15 6 1.5297 0.0002 2.4986 16 6 2.0703 -0.7044 3.7469 17 7 1.7080 -2.1268 3.6813 18 6 1.0550 -2.7169 4.7021 19 8 0.7614 -2.0730 5.6871 20 6 0.6959 -4.1783 4.6224 21 7 0.0028 -4.5783 5.8494 22 6 -1.2087 -5.1593 5.9302 23 7 -1.4502 -5.3503 7.2042 24 7 -0.4433 -4.9022 7.8716 25 7 0.4365 -4.4350 7.0560 26 6 2.0763 -2.8951 2.4843 27 6 1.5309 -2.1646 1.2478 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1300 -0.7217 -1.2491 35 1 1.6767 -1.7490 -1.2493 36 1 0.9943 0.7583 -2.3564 37 1 0.3416 1.6848 -5.4938 38 1 3.1300 -0.7209 1.2492 39 1 0.4400 -0.0215 2.5117 40 1 1.8729 1.0347 2.4874 41 1 1.6314 -0.2563 4.6383 42 1 3.1551 -0.6049 3.7843 43 1 0.0434 -4.3458 3.7654 44 1 1.6042 -4.7699 4.5087 45 1 -1.8551 -5.4200 5.1051 46 1 3.1617 -2.9706 2.4183 47 1 1.6414 -3.8928 2.5424 48 1 0.4411 -2.1659 1.2727 49 1 1.8747 -2.6709 0.3459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101508496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:59 Heat of formation + Delta-G solvation = 72.360958 kcal Electronic energy + Delta-G solvation = -29696.429447 eV Core-core repulsion = 25695.813454 eV Total energy + Delta-G solvation = -4000.615993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.15842 -41.52145 -39.99429 -37.48361 -36.44390 -35.51753 -33.51192 -33.16271 -32.21860 -31.65137 -29.87779 -28.14843 -27.47085 -26.37883 -25.03719 -24.79879 -24.09496 -23.66333 -22.16962 -20.39841 -19.49958 -19.11738 -18.73658 -18.47122 -17.51012 -17.05613 -16.72716 -16.63708 -16.39428 -16.03426 -15.43036 -15.26276 -15.14962 -15.05478 -14.72414 -14.49520 -14.14930 -14.09825 -13.92301 -13.54279 -13.24730 -13.13697 -13.06256 -13.04291 -12.81637 -12.69740 -12.60417 -12.26180 -12.19053 -12.15168 -12.11420 -11.93605 -11.86358 -11.69776 -11.46651 -11.21756 -11.14217 -10.90827 -10.83378 -10.75948 -9.70697 -8.89429 -7.90505 -5.16761 0.27535 0.97239 1.26110 1.38233 1.49005 1.51222 1.57251 1.90317 2.59458 3.08217 3.43300 3.44387 3.50193 3.72027 3.80440 3.83742 3.96936 3.98957 4.14005 4.20852 4.30720 4.32326 4.39629 4.41429 4.43828 4.52019 4.65637 4.71397 4.82686 4.86767 4.88759 4.94578 4.99656 5.03540 5.06155 5.11940 5.20640 5.22032 5.28853 5.30891 5.39467 5.43166 5.51528 5.56904 5.68110 5.74068 6.26562 6.32642 6.95342 7.39162 7.58534 8.20651 8.40854 9.33118 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.002160 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.153770 B =12962.455739 C =13572.261226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.136 4.136 4 C 0.160 3.840 5 N -0.743 5.743 6 C -0.237 4.237 7 H 0.076 0.924 8 C -0.079 4.079 9 N -0.972 5.972 10 Si 0.969 3.031 11 H -0.276 1.276 12 H -0.300 1.300 13 H -0.280 1.280 14 C -0.065 4.065 15 C -0.123 4.123 16 C 0.116 3.884 17 N -0.596 5.596 18 C 0.498 3.502 19 O -0.575 6.575 20 C 0.091 3.909 21 N -0.298 5.298 22 C 0.183 3.817 23 N -0.347 5.347 24 N -0.120 5.120 25 N -0.096 5.096 26 C 0.102 3.898 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.013 0.987 35 H 0.032 0.968 36 H 0.374 0.626 37 H 0.249 0.751 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.198 0.802 44 H 0.170 0.830 45 H 0.293 0.707 46 H 0.091 0.909 47 H 0.124 0.876 48 H 0.073 0.927 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -12.985 16.040 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 C -0.193 4.193 4 C 0.034 3.966 5 N -0.386 5.386 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.271 4.271 9 N -0.623 5.623 10 Si 0.799 3.201 11 H -0.203 1.203 12 H -0.227 1.227 13 H -0.206 1.206 14 C -0.084 4.084 15 C -0.161 4.161 16 C -0.007 4.007 17 N -0.329 5.329 18 C 0.285 3.715 19 O -0.454 6.454 20 C -0.032 4.032 21 N -0.101 5.101 22 C -0.115 4.115 23 N -0.195 5.195 24 N -0.114 5.114 25 N -0.083 5.083 26 C -0.019 4.019 27 C -0.174 4.174 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.208 0.792 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.215 0.785 44 H 0.187 0.813 45 H 0.309 0.691 46 H 0.110 0.890 47 H 0.142 0.858 48 H 0.091 0.909 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.029 -12.705 17.820 21.979 hybrid contribution -0.175 0.807 -2.270 2.416 sum 1.854 -11.898 15.550 19.667 Atomic orbital electron populations 1.21818 0.94954 1.01712 1.00374 1.20593 0.95480 0.95145 0.94298 1.21824 1.00598 0.96142 1.00773 1.20947 0.95438 0.94755 0.85481 1.42676 1.61203 1.33463 1.01267 1.19610 1.24164 1.08087 0.85034 0.90612 1.25514 1.01538 0.98687 1.01406 1.69808 1.41291 1.22431 1.28763 0.85269 0.77620 0.77339 0.79897 1.20257 1.22692 1.20625 1.21020 1.00389 0.94941 0.92023 1.21993 1.01117 0.99833 0.93138 1.21596 1.00547 0.79964 0.98577 1.48153 1.55731 1.11209 1.17770 1.20771 0.78154 0.89849 0.82757 1.90836 1.55415 1.66226 1.32921 1.22649 1.03852 0.93516 0.83173 1.48447 1.15026 1.39217 1.07362 1.28776 0.87485 0.96245 0.98949 1.74885 1.20251 1.20921 1.03404 1.78647 0.97158 1.11978 1.23643 1.78915 1.23279 1.17303 0.88782 1.22275 1.02199 0.95563 0.81831 1.22191 1.01798 0.94957 0.98415 0.91893 0.95556 0.91980 0.92996 0.95337 0.91280 0.96940 0.95058 0.79246 0.94277 0.90424 0.91841 0.90208 0.91099 0.90019 0.78476 0.81265 0.69149 0.89049 0.85787 0.90887 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 7.60 71.98 0.55 -2.96 16 2 C -0.05 -1.40 0.33 -52.18 -0.02 -1.42 16 3 C -0.14 -3.82 7.95 71.98 0.57 -3.25 16 4 C 0.16 5.44 4.80 86.38 0.41 5.86 16 5 N -0.74 -34.98 5.00 -343.44 -1.72 -36.70 16 6 C -0.24 -12.54 9.99 84.03 0.84 -11.70 16 7 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 8 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 9 N -0.97 -58.20 13.06 21.65 0.28 -57.91 16 10 Si 0.97 44.66 29.55 68.60 2.03 46.68 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 C -0.06 -1.07 1.51 -10.77 -0.02 -1.09 16 15 C -0.12 -1.90 4.65 30.68 0.14 -1.76 16 16 C 0.12 1.69 6.43 86.36 0.56 2.24 16 17 N -0.60 -6.53 2.97 -818.06 -2.43 -8.95 16 18 C 0.50 7.02 7.72 87.66 0.68 7.70 16 19 O -0.58 -15.14 15.11 -3.04 -0.05 -15.19 16 20 C 0.09 0.36 5.31 85.64 0.45 0.81 16 21 N -0.30 -4.09 3.19 -355.58 -1.14 -5.22 16 22 C 0.18 2.02 12.79 180.27 2.31 4.33 16 23 N -0.35 -7.74 12.36 -60.29 -0.74 -8.48 16 24 N -0.12 -3.35 13.43 37.01 0.50 -2.85 16 25 N -0.10 -2.34 12.28 37.02 0.45 -1.89 16 26 C 0.10 0.49 6.37 86.51 0.55 1.04 16 27 C -0.14 -1.54 4.66 30.82 0.14 -1.39 16 28 H 0.06 1.44 6.46 -2.39 -0.02 1.42 16 29 H 0.03 0.90 6.86 -2.38 -0.02 0.89 16 30 H 0.06 1.50 6.46 -2.39 -0.02 1.48 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 1.01 6.86 -2.39 -0.02 0.99 16 33 H 0.07 1.60 6.40 -2.39 -0.02 1.58 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.03 1.01 6.40 -2.38 -0.02 1.00 16 36 H 0.37 19.12 5.36 -92.71 -0.50 18.62 16 37 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.10 6.51 -2.39 -0.02 1.09 16 40 H 0.08 1.27 6.36 -2.39 -0.02 1.26 16 41 H 0.07 1.38 7.00 -2.39 -0.02 1.36 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.20 -1.38 7.64 -2.38 -0.02 -1.39 16 44 H 0.17 -0.42 7.93 -2.39 -0.02 -0.43 16 45 H 0.29 -0.89 8.06 -2.91 -0.02 -0.92 16 46 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.12 -0.45 5.94 -2.39 -0.01 -0.47 16 48 H 0.07 0.87 6.51 -2.39 -0.02 0.86 16 49 H 0.09 1.09 6.36 -2.39 -0.02 1.07 16 Total: -1.00 -87.65 377.83 5.31 -82.34 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.49 Total: 13.74 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 7.64 Total: -5.56 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -4.79 Total: -122.01 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.05 Total: -15.19 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -87.65 5.31 -82.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101508496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.698 kcal (2) G-P(sol) polarization free energy of solvation -87.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds