Wall clock time and date at job start Tue Mar 31 2020 20:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46505 * 109.47212 * 300.00138 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 15 15 C 1.53037 * 109.46046 * 180.02562 * 14 2 1 16 16 C 1.53201 * 109.31127 * 178.59697 * 15 14 2 17 17 N 1.46921 * 108.76377 * 54.66142 * 16 15 14 18 18 C 1.34779 * 120.63332 * 126.36366 * 17 16 15 19 19 O 1.21284 * 119.99620 * 180.02562 * 18 17 16 20 20 C 1.50692 * 119.99963 * 0.02562 * 18 17 16 21 21 N 1.46503 * 109.47363 * 180.02562 * 20 18 17 22 22 N 1.28881 * 125.44731 * 269.72163 * 21 20 18 23 23 C 1.31040 * 107.91351 * 179.89317 * 22 21 20 24 24 N 1.33314 * 106.90160 * 0.35983 * 23 22 21 25 25 N 1.28775 * 125.45012 * 90.02523 * 21 20 18 26 26 C 1.46932 * 118.73592 * 306.37486 * 17 16 15 27 27 C 1.53043 * 109.46339 * 59.96767 * 14 2 1 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 37 37 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.45911 * 299.99767 * 14 2 1 39 39 H 1.08996 * 109.49850 * 298.55996 * 15 14 2 40 40 H 1.08997 * 109.49675 * 58.66461 * 15 14 2 41 41 H 1.08997 * 109.59941 * 294.86415 * 16 15 14 42 42 H 1.09005 * 109.69619 * 174.50855 * 16 15 14 43 43 H 1.08996 * 109.47350 * 300.00895 * 20 18 17 44 44 H 1.09005 * 109.46943 * 60.00571 * 20 18 17 45 45 H 1.08005 * 126.54742 * 180.13833 * 23 22 21 46 46 H 1.09000 * 109.58765 * 293.82873 * 26 17 16 47 47 H 1.09006 * 109.70332 * 173.46858 * 26 17 16 48 48 H 1.08999 * 109.50071 * 301.33691 * 27 14 2 49 49 H 1.08998 * 109.49573 * 61.40479 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5517 -0.0306 2.4454 6 6 1.8821 -0.4988 3.6892 7 1 2.5030 -1.3769 3.7882 8 6 1.4190 0.1552 4.8225 9 7 0.6618 1.2250 4.7018 10 14 1.8702 -0.4830 6.5191 11 1 3.3468 -0.4705 6.6760 12 1 1.2556 0.3862 7.5545 13 1 1.3675 -1.8715 6.6755 14 6 2.0401 -0.7211 -1.2492 15 6 3.5704 -0.7215 -1.2486 16 6 4.0774 -1.4747 -2.4826 17 7 3.4749 -0.8767 -3.6818 18 6 4.2485 -0.4572 -4.7026 19 8 3.7389 0.0352 -5.6870 20 6 5.7464 -0.5999 -4.6210 21 7 6.3547 -0.0736 -5.8454 22 7 6.6032 -0.7566 -6.9098 23 6 7.1431 0.0506 -7.7897 24 7 7.2215 1.2518 -7.2168 25 7 6.7316 1.1440 -6.0284 26 6 2.0130 -0.7446 -3.7469 27 6 1.5292 0.0001 -2.4986 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9937 0.7578 2.3564 37 1 0.3378 1.6819 5.4938 38 1 1.6766 -1.7488 -1.2491 39 1 3.9345 0.3055 -1.2741 40 1 3.9337 -1.2147 -0.3471 41 1 3.7905 -2.5240 -2.4139 42 1 5.1630 -1.3958 -2.5410 43 1 6.1183 -0.0416 -3.7619 44 1 6.0055 -1.6529 -4.5097 45 1 7.4665 -0.2088 -8.7870 46 1 1.5578 -1.7344 -3.7814 47 1 1.7341 -0.1829 -4.6385 48 1 0.4394 0.0207 -2.4869 49 1 1.9122 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101543049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:04 Heat of formation + Delta-G solvation = 107.341844 kcal Electronic energy + Delta-G solvation = -29695.618710 eV Core-core repulsion = 25696.519603 eV Total energy + Delta-G solvation = -3999.099108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.62659 -40.83598 -39.04083 -36.46872 -35.34499 -33.89940 -33.38109 -31.97979 -31.47332 -30.21669 -29.27047 -26.96470 -26.05605 -25.38095 -24.26195 -23.90198 -23.03389 -22.61298 -21.29525 -19.74533 -18.61301 -18.15261 -17.91552 -17.22134 -16.77598 -16.34428 -15.96886 -15.58602 -14.84179 -14.76743 -14.42618 -14.32811 -14.20980 -14.05737 -13.88735 -13.48053 -13.45152 -12.93241 -12.85804 -12.68477 -12.47247 -12.27440 -11.91756 -11.74946 -11.61900 -11.45828 -11.29905 -11.26299 -11.02651 -10.96564 -10.92544 -10.84822 -10.76525 -10.34445 -10.23946 -10.21363 -10.06297 -9.74351 -9.58714 -9.06919 -8.87381 -6.91561 -5.78389 -3.06117 0.85678 1.38855 1.93966 1.97329 2.49364 3.41408 3.46035 3.47127 3.66334 3.69172 4.04944 4.19971 4.38984 4.52297 4.55572 4.62383 4.69330 4.81632 4.99482 5.03461 5.20570 5.37115 5.38523 5.40791 5.41401 5.45549 5.50777 5.58524 5.65256 5.69832 5.77397 5.84752 5.91930 5.98066 6.04551 6.09749 6.20954 6.27286 6.31595 6.32647 6.53947 6.67460 6.70288 6.81204 6.90137 6.93140 7.50918 7.66800 8.05574 8.41279 9.52238 10.11814 10.45769 11.44499 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.002160 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.038464 B =12960.710279 C =13497.339978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.139 4.139 4 C 0.163 3.837 5 N -0.729 5.729 6 C -0.238 4.238 7 H 0.068 0.932 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.287 1.287 14 C -0.072 4.072 15 C -0.137 4.137 16 C 0.100 3.900 17 N -0.598 5.598 18 C 0.507 3.493 19 O -0.525 6.525 20 C 0.110 3.890 21 N -0.127 5.127 22 N -0.303 5.303 23 C 0.145 3.855 24 N -0.285 5.285 25 N -0.047 5.047 26 C 0.113 3.887 27 C -0.133 4.133 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.236 0.764 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 -6.617 -21.376 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.196 4.196 4 C 0.035 3.965 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.086 0.914 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 C -0.091 4.091 15 C -0.175 4.175 16 C -0.022 4.022 17 N -0.332 5.332 18 C 0.291 3.709 19 O -0.401 6.401 20 C -0.015 4.015 21 N -0.038 5.038 22 N -0.153 5.153 23 C -0.158 4.158 24 N -0.156 5.156 25 N -0.042 5.042 26 C -0.008 4.008 27 C -0.171 4.171 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.252 0.748 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.100 0.900 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.619 -6.088 -21.217 23.696 hybrid contribution 0.103 -0.517 0.660 0.844 sum 8.722 -6.605 -20.557 23.287 Atomic orbital electron populations 1.21856 0.94607 1.01475 1.01615 1.20682 0.95778 0.95783 0.94222 1.21897 1.00605 0.95563 1.01533 1.20729 0.95881 0.94126 0.85767 1.42423 1.61355 1.33383 1.00291 1.19165 1.25552 1.08527 0.83701 0.91414 1.24719 1.00575 0.97986 0.97754 1.69637 1.39306 1.20882 1.28444 0.86288 0.77810 0.77833 0.84368 1.21347 1.21735 1.21351 1.21098 0.94249 0.99615 0.94134 1.22156 0.96728 1.01644 0.96993 1.22007 0.97660 0.98101 0.84448 1.48069 1.07671 1.60396 1.17082 1.20138 0.88013 0.79093 0.83659 1.90808 1.74390 1.43736 1.31190 1.22100 0.92530 1.04195 0.82657 1.49522 1.37488 1.04952 1.11841 1.74697 1.18667 1.26526 0.95369 1.27356 1.00292 0.86239 1.01940 1.75898 1.17636 1.22279 0.99776 1.79030 1.10580 1.01654 1.12887 1.21742 0.77751 1.01286 1.00058 1.22117 1.01656 1.00039 0.93272 0.91466 0.93519 0.93164 0.92990 0.93622 0.91584 0.96297 0.96725 0.78031 0.93493 0.90979 0.90716 0.89230 0.90219 0.90102 0.83384 0.83637 0.74753 0.91025 0.89081 0.89972 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.95 37.16 0.30 -1.71 16 2 C -0.06 -0.90 0.33 -154.51 -0.05 -0.95 16 3 C -0.14 -2.01 7.60 37.16 0.28 -1.73 16 4 C 0.16 2.94 4.80 -4.04 -0.02 2.92 16 5 N -0.73 -17.38 5.00 -59.91 -0.30 -17.68 16 6 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 7 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 10 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 14 C -0.07 -0.73 1.51 -90.58 -0.14 -0.87 16 15 C -0.14 -1.18 4.65 -26.61 -0.12 -1.30 16 16 C 0.10 0.59 6.34 -3.71 -0.02 0.57 16 17 N -0.60 -4.85 2.97 -172.76 -0.51 -5.36 16 18 C 0.51 4.94 7.77 -10.99 -0.09 4.85 16 19 O -0.53 -7.55 15.85 5.55 0.09 -7.46 16 20 C 0.11 0.73 5.43 -5.20 -0.03 0.70 16 21 N -0.13 -1.32 3.49 -11.72 -0.04 -1.36 16 22 N -0.30 -3.16 12.13 29.34 0.36 -2.80 16 23 C 0.14 1.34 13.26 -91.59 -1.21 0.12 16 24 N -0.28 -3.42 12.50 29.33 0.37 -3.05 16 25 N -0.05 -0.59 13.25 60.35 0.80 0.21 16 26 C 0.11 1.00 6.43 -3.71 -0.02 0.97 16 27 C -0.13 -1.25 4.65 -26.61 -0.12 -1.37 16 28 H 0.07 1.19 6.86 -51.93 -0.36 0.83 16 29 H 0.05 0.57 6.40 -51.93 -0.33 0.24 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.72 6.46 -51.93 -0.34 0.39 16 32 H 0.04 0.58 6.46 -51.93 -0.34 0.25 16 33 H 0.07 1.17 6.86 -51.93 -0.36 0.81 16 34 H 0.02 0.34 6.40 -51.93 -0.33 0.01 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.38 9.67 5.36 -40.82 -0.22 9.45 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.70 6.51 -51.93 -0.34 0.36 16 40 H 0.09 0.83 6.36 -51.93 -0.33 0.50 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.25 5.93 -51.93 -0.31 -0.06 16 43 H 0.15 0.59 7.69 -51.93 -0.40 0.19 16 44 H 0.15 0.48 7.94 -51.93 -0.41 0.07 16 45 H 0.24 1.01 8.06 -52.48 -0.42 0.58 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.94 7.01 -51.93 -0.36 0.58 16 48 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 49 H 0.07 0.76 6.51 -51.93 -0.34 0.42 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -35.79 379.35 -6.49 -42.28 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.17 Total: 4.34 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.50 Total: -4.87 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 1.39 Total: -56.95 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.79 -6.49 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101543049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.625 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds