Wall clock time and date at job start Tue Mar 31 2020 20:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46505 * 109.47212 * 300.00138 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 15 15 C 1.53037 * 109.46046 * 180.02562 * 14 2 1 16 16 C 1.53201 * 109.31127 * 178.59697 * 15 14 2 17 17 N 1.46921 * 108.76377 * 54.66142 * 16 15 14 18 18 C 1.34779 * 120.63332 * 126.36366 * 17 16 15 19 19 O 1.21284 * 119.99620 * 180.02562 * 18 17 16 20 20 C 1.50692 * 119.99963 * 0.02562 * 18 17 16 21 21 N 1.46503 * 109.47363 * 180.02562 * 20 18 17 22 22 N 1.28881 * 125.44731 * 269.72163 * 21 20 18 23 23 C 1.31040 * 107.91351 * 179.89317 * 22 21 20 24 24 N 1.33314 * 106.90160 * 0.35983 * 23 22 21 25 25 N 1.28775 * 125.45012 * 90.02523 * 21 20 18 26 26 C 1.46932 * 118.73592 * 306.37486 * 17 16 15 27 27 C 1.53043 * 109.46339 * 59.96767 * 14 2 1 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 37 37 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.45911 * 299.99767 * 14 2 1 39 39 H 1.08996 * 109.49850 * 298.55996 * 15 14 2 40 40 H 1.08997 * 109.49675 * 58.66461 * 15 14 2 41 41 H 1.08997 * 109.59941 * 294.86415 * 16 15 14 42 42 H 1.09005 * 109.69619 * 174.50855 * 16 15 14 43 43 H 1.08996 * 109.47350 * 300.00895 * 20 18 17 44 44 H 1.09005 * 109.46943 * 60.00571 * 20 18 17 45 45 H 1.08005 * 126.54742 * 180.13833 * 23 22 21 46 46 H 1.09000 * 109.58765 * 293.82873 * 26 17 16 47 47 H 1.09006 * 109.70332 * 173.46858 * 26 17 16 48 48 H 1.08999 * 109.50071 * 301.33691 * 27 14 2 49 49 H 1.08998 * 109.49573 * 61.40479 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5517 -0.0306 2.4454 6 6 1.8821 -0.4988 3.6892 7 1 2.5030 -1.3769 3.7882 8 6 1.4190 0.1552 4.8225 9 7 0.6618 1.2250 4.7018 10 14 1.8702 -0.4830 6.5191 11 1 3.3468 -0.4705 6.6760 12 1 1.2556 0.3862 7.5545 13 1 1.3675 -1.8715 6.6755 14 6 2.0401 -0.7211 -1.2492 15 6 3.5704 -0.7215 -1.2486 16 6 4.0774 -1.4747 -2.4826 17 7 3.4749 -0.8767 -3.6818 18 6 4.2485 -0.4572 -4.7026 19 8 3.7389 0.0352 -5.6870 20 6 5.7464 -0.5999 -4.6210 21 7 6.3547 -0.0736 -5.8454 22 7 6.6032 -0.7566 -6.9098 23 6 7.1431 0.0506 -7.7897 24 7 7.2215 1.2518 -7.2168 25 7 6.7316 1.1440 -6.0284 26 6 2.0130 -0.7446 -3.7469 27 6 1.5292 0.0001 -2.4986 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9937 0.7578 2.3564 37 1 0.3378 1.6819 5.4938 38 1 1.6766 -1.7488 -1.2491 39 1 3.9345 0.3055 -1.2741 40 1 3.9337 -1.2147 -0.3471 41 1 3.7905 -2.5240 -2.4139 42 1 5.1630 -1.3958 -2.5410 43 1 6.1183 -0.0416 -3.7619 44 1 6.0055 -1.6529 -4.5097 45 1 7.4665 -0.2088 -8.7870 46 1 1.5578 -1.7344 -3.7814 47 1 1.7341 -0.1829 -4.6385 48 1 0.4394 0.0207 -2.4869 49 1 1.9122 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101543049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:03 Heat of formation + Delta-G solvation = 82.879947 kcal Electronic energy + Delta-G solvation = -29696.679458 eV Core-core repulsion = 25696.519603 eV Total energy + Delta-G solvation = -4000.159855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.35660 -41.58282 -40.02512 -37.50279 -36.05674 -35.53047 -34.12974 -33.21431 -32.26903 -31.68633 -30.04978 -28.15728 -27.48191 -26.43306 -25.05008 -24.94214 -24.04099 -23.67938 -22.20514 -20.52356 -19.55196 -19.25399 -18.86377 -18.57531 -17.56886 -16.99840 -16.69763 -16.61100 -16.22052 -16.03429 -15.43780 -15.26584 -15.15491 -15.06640 -14.94039 -14.68280 -14.26931 -14.15195 -14.04236 -13.62868 -13.29166 -13.10192 -13.05603 -12.96795 -12.82938 -12.70314 -12.61279 -12.28685 -12.22222 -12.14603 -12.04696 -11.94645 -11.87661 -11.72100 -11.70339 -11.22997 -11.17286 -10.91792 -10.85543 -10.77302 -9.76928 -8.89931 -7.90759 -5.17193 0.09848 0.80822 1.25205 1.27618 1.48331 1.50790 1.56815 1.86764 2.59049 3.08988 3.15428 3.42895 3.47957 3.70625 3.76892 3.81256 3.85046 3.98565 4.11589 4.18801 4.28913 4.31377 4.39837 4.41967 4.49610 4.63147 4.70219 4.77129 4.81164 4.85198 4.87331 4.92903 4.97271 5.02346 5.03757 5.05852 5.13826 5.19579 5.27932 5.29984 5.36798 5.41127 5.50172 5.55126 5.67102 5.72381 6.17610 6.32266 6.83610 7.30589 7.38708 8.20030 8.40533 9.32856 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.002160 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.038464 B =12960.710279 C =13497.339978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 C -0.132 4.132 4 C 0.160 3.840 5 N -0.743 5.743 6 C -0.237 4.237 7 H 0.076 0.924 8 C -0.080 4.080 9 N -0.971 5.971 10 Si 0.970 3.030 11 H -0.278 1.278 12 H -0.300 1.300 13 H -0.279 1.279 14 C -0.064 4.064 15 C -0.138 4.138 16 C 0.101 3.899 17 N -0.592 5.592 18 C 0.505 3.495 19 O -0.580 6.580 20 C 0.102 3.898 21 N -0.123 5.123 22 N -0.315 5.315 23 C 0.148 3.852 24 N -0.314 5.314 25 N -0.075 5.075 26 C 0.116 3.884 27 C -0.125 4.125 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.029 0.971 35 H 0.015 0.985 36 H 0.374 0.626 37 H 0.249 0.751 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.178 0.822 44 H 0.186 0.814 45 H 0.275 0.725 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.638 -8.934 -22.326 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C -0.190 4.190 4 C 0.034 3.966 5 N -0.386 5.386 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.272 4.272 9 N -0.623 5.623 10 Si 0.799 3.201 11 H -0.204 1.204 12 H -0.226 1.226 13 H -0.205 1.205 14 C -0.083 4.083 15 C -0.176 4.176 16 C -0.020 4.020 17 N -0.324 5.324 18 C 0.291 3.709 19 O -0.460 6.460 20 C -0.020 4.020 21 N -0.036 5.036 22 N -0.165 5.165 23 C -0.155 4.155 24 N -0.184 5.184 25 N -0.069 5.069 26 C -0.007 4.007 27 C -0.163 4.163 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.208 0.792 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.195 0.805 44 H 0.203 0.797 45 H 0.291 0.709 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.338 -8.449 -22.163 25.873 hybrid contribution -0.454 0.152 0.913 1.031 sum 9.884 -8.297 -21.249 24.861 Atomic orbital electron populations 1.21817 0.95156 1.01453 1.00818 1.20590 0.95263 0.95366 0.94296 1.21825 1.00916 0.95813 1.00402 1.20947 0.96252 0.93949 0.85491 1.42675 1.61263 1.33408 1.01264 1.19609 1.24216 1.08070 0.85040 0.90629 1.25522 1.01514 0.98710 1.01442 1.69808 1.41213 1.22496 1.28774 0.85259 0.77735 0.77219 0.79852 1.20388 1.22626 1.20494 1.21020 0.95670 0.99503 0.92085 1.22124 0.95203 1.01788 0.98437 1.22209 0.99664 0.98293 0.81835 1.48137 1.07327 1.59608 1.17375 1.20622 0.89259 0.78006 0.83023 1.90790 1.75589 1.46266 1.33368 1.22579 0.90125 1.06969 0.82368 1.49829 1.36761 1.04449 1.12550 1.74684 1.19131 1.26960 0.95732 1.28186 0.99018 0.85171 1.03107 1.75856 1.18674 1.23765 1.00154 1.78961 1.11686 1.02782 1.13450 1.21661 0.78576 1.01749 0.98670 1.22016 1.01767 0.99327 0.93157 0.95324 0.91213 0.92760 0.92361 0.91898 0.95460 0.95313 0.96667 0.79241 0.94266 0.89924 0.91432 0.89470 0.88247 0.86490 0.80487 0.79722 0.70948 0.89341 0.90907 0.89755 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 7.95 71.98 0.57 -3.31 16 2 C -0.05 -1.48 0.33 -52.18 -0.02 -1.49 16 3 C -0.13 -3.82 7.60 71.98 0.55 -3.27 16 4 C 0.16 5.65 4.80 86.38 0.41 6.06 16 5 N -0.74 -35.85 5.00 -343.45 -1.72 -37.57 16 6 C -0.24 -12.82 9.99 84.03 0.84 -11.98 16 7 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 8 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 9 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 10 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 C -0.06 -1.14 1.51 -10.77 -0.02 -1.16 16 15 C -0.14 -1.93 4.65 30.67 0.14 -1.78 16 16 C 0.10 0.75 6.34 86.37 0.55 1.29 16 17 N -0.59 -7.83 2.97 -818.87 -2.43 -10.26 16 18 C 0.50 8.71 7.77 87.65 0.68 9.39 16 19 O -0.58 -16.32 15.85 -3.04 -0.05 -16.36 16 20 C 0.10 1.03 5.43 85.63 0.47 1.50 16 21 N -0.12 -2.33 3.49 -190.99 -0.67 -3.00 16 22 N -0.32 -5.97 12.13 -61.09 -0.74 -6.72 16 23 C 0.15 2.49 13.26 180.69 2.40 4.89 16 24 N -0.31 -7.31 12.50 -61.11 -0.76 -8.08 16 25 N -0.07 -1.79 13.25 37.02 0.49 -1.30 16 26 C 0.12 1.79 6.43 86.36 0.56 2.34 16 27 C -0.12 -2.09 4.65 30.67 0.14 -1.95 16 28 H 0.03 1.03 6.86 -2.39 -0.02 1.02 16 29 H 0.07 1.65 6.40 -2.39 -0.02 1.63 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.58 6.46 -2.39 -0.02 1.56 16 32 H 0.06 1.57 6.46 -2.39 -0.02 1.56 16 33 H 0.03 0.98 6.86 -2.39 -0.02 0.97 16 34 H 0.03 0.98 6.40 -2.39 -0.02 0.97 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.37 19.55 5.36 -92.71 -0.50 19.05 16 37 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.07 1.07 6.51 -2.39 -0.02 1.05 16 40 H 0.09 1.32 6.36 -2.39 -0.02 1.30 16 41 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.12 0.07 5.93 -2.38 -0.01 0.05 16 43 H 0.18 0.70 7.69 -2.39 -0.02 0.69 16 44 H 0.19 0.34 7.94 -2.38 -0.02 0.32 16 45 H 0.28 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.45 7.01 -2.38 -0.02 1.43 16 48 H 0.08 1.38 6.36 -2.39 -0.02 1.37 16 49 H 0.06 1.18 6.51 -2.39 -0.02 1.16 16 Total: -1.00 -81.46 379.35 4.65 -76.80 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.49 Total: 21.33 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 7.74 Total: -3.53 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.55 Total: -125.70 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.36 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -81.46 4.65 -76.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101543049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.684 kcal (2) G-P(sol) polarization free energy of solvation -81.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds