Wall clock time and date at job start Tue Mar 31 2020 20:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28718 * 125.32232 * 2 1 4 4 N 1.28985 * 108.99068 * 180.02562 * 3 2 1 5 5 C 1.34191 * 107.24895 * 0.02562 * 4 3 2 6 6 C 1.48005 * 126.69564 * 179.97438 * 5 4 3 7 7 O 1.21535 * 119.99751 * 172.45616 * 6 5 4 8 8 N 1.34773 * 120.00084 * 352.45163 * 6 5 4 9 9 C 1.46926 * 120.63055 * 353.01660 * 8 6 5 10 10 C 1.53196 * 108.77344 * 233.58446 * 9 8 6 11 11 C 1.53042 * 109.31288 * 305.36435 * 10 9 8 12 12 C 1.53002 * 109.45766 * 181.38497 * 11 10 9 13 13 C 1.53002 * 109.47046 * 59.97352 * 12 11 10 14 14 C 1.52995 * 109.47240 * 299.97209 * 12 11 10 15 15 C 1.52998 * 109.47042 * 179.97438 * 12 11 10 16 16 N 1.46498 * 109.47552 * 179.97438 * 15 12 11 17 17 C 1.36931 * 120.00216 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00457 * 359.97438 * 17 16 15 19 19 C 1.38817 * 120.00100 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99860 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00175 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46803 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47062 * 119.99397 * 21 19 17 24 24 H 1.48501 * 109.46538 * 239.99488 * 21 19 17 25 25 C 1.53038 * 109.52783 * 61.37194 * 11 10 9 26 26 C 1.46925 * 120.63168 * 172.99084 * 8 6 5 27 27 N 1.28872 * 125.31922 * 180.31968 * 2 1 3 28 28 H 1.08999 * 109.46859 * 89.97018 * 1 2 3 29 29 H 1.08995 * 109.46991 * 209.97352 * 1 2 3 30 30 H 1.09000 * 109.46727 * 329.97597 * 1 2 3 31 31 H 1.08997 * 109.58805 * 113.79652 * 9 8 6 32 32 H 1.08999 * 109.70244 * 353.44118 * 9 8 6 33 33 H 1.09007 * 109.49785 * 185.41200 * 10 9 8 34 34 H 1.09005 * 109.49660 * 65.31965 * 10 9 8 35 35 H 1.08997 * 109.45607 * 301.35521 * 11 10 9 36 36 H 1.09003 * 109.46843 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.47472 * 299.99996 * 13 12 11 38 38 H 1.09008 * 109.47159 * 60.00027 * 13 12 11 39 39 H 1.08996 * 109.47294 * 300.00300 * 14 12 11 40 40 H 1.09001 * 109.47155 * 60.00592 * 14 12 11 41 41 H 1.09003 * 109.47011 * 180.02562 * 14 12 11 42 42 H 1.09008 * 109.46903 * 59.99826 * 15 12 11 43 43 H 1.09001 * 109.47228 * 300.00802 * 15 12 11 44 44 H 0.97001 * 119.99714 * 0.02562 * 16 15 12 45 45 H 0.96996 * 120.00350 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.49760 * 58.57993 * 25 11 10 47 47 H 1.08990 * 109.50035 * 178.67460 * 25 11 10 48 48 H 1.08999 * 109.58734 * 246.20638 * 26 8 6 49 49 H 1.09004 * 109.58270 * 6.48434 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0015 6 6 4.6693 -1.5195 -0.0029 7 8 4.5523 -2.7214 0.1346 8 7 5.8923 -0.9747 -0.1567 9 6 6.0417 0.4517 -0.4758 10 6 6.9169 0.5882 -1.7257 11 6 8.2399 -0.1473 -1.5000 12 6 9.1307 0.0161 -2.7332 13 6 9.4065 1.5023 -2.9698 14 6 8.4226 -0.5721 -3.9553 15 6 10.4536 -0.7186 -2.5077 16 7 11.3064 -0.5627 -3.6887 17 6 12.5482 -1.1389 -3.7174 18 1 12.8993 -1.7080 -2.8692 19 6 13.3564 -0.9908 -4.8362 20 7 12.9288 -0.2969 -5.8697 21 14 15.0508 -1.7762 -4.8751 22 1 15.2920 -2.4962 -3.5990 23 1 15.1262 -2.7349 -6.0067 24 1 16.0813 -0.7214 -5.0504 25 6 7.9647 -1.6340 -1.2632 26 6 7.1017 -1.7957 -0.0079 27 7 2.2101 -1.0515 -0.0059 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 6.5160 0.9655 0.3604 32 1 5.0621 0.8903 -0.6659 33 1 7.1151 1.6428 -1.9176 34 1 6.4000 0.1532 -2.5811 35 1 8.7445 0.2719 -0.6295 36 1 10.0415 1.6186 -3.8482 37 1 8.4640 2.0257 -3.1305 38 1 9.9110 1.9214 -2.0991 39 1 8.2261 -1.6309 -3.7867 40 1 7.4802 -0.0487 -4.1161 41 1 9.0575 -0.4561 -4.8338 42 1 10.2570 -1.7774 -2.3391 43 1 10.9580 -0.2997 -1.6369 44 1 10.9912 -0.0514 -4.4503 45 1 13.4933 -0.1937 -6.6517 46 1 7.4379 -2.0479 -2.1230 47 1 8.9086 -2.1613 -1.1259 48 1 7.6624 -1.4653 0.8665 49 1 6.8204 -2.8420 0.1124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101565023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:56 Heat of formation + Delta-G solvation = 117.057437 kcal Electronic energy + Delta-G solvation = -29855.069267 eV Core-core repulsion = 25856.391459 eV Total energy + Delta-G solvation = -3998.677808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.85598 -40.48058 -38.76596 -36.32088 -35.68504 -33.72866 -33.61410 -31.70737 -31.31541 -29.79810 -29.28471 -26.87749 -26.41627 -25.61922 -24.54920 -23.76452 -23.08129 -22.31458 -21.32901 -19.90784 -18.37672 -18.07018 -17.86909 -17.24909 -16.97050 -16.43329 -15.54722 -14.94938 -14.73779 -14.52679 -14.49160 -14.15911 -14.00636 -13.84709 -13.78769 -13.75103 -13.22240 -12.96737 -12.96007 -12.57561 -12.50885 -12.12375 -11.91330 -11.62286 -11.55529 -11.46734 -11.35597 -11.02412 -10.91584 -10.85619 -10.77793 -10.75010 -10.62230 -10.42301 -10.10881 -10.06807 -9.93015 -9.60494 -9.45480 -8.84287 -8.79212 -6.82924 -5.71540 -2.98385 0.56911 1.03332 1.29812 2.42812 2.77219 3.46329 3.51326 3.52175 3.54174 3.64015 4.26234 4.31809 4.57373 4.62794 4.64113 4.83803 4.86572 4.87837 5.05359 5.10205 5.27641 5.38618 5.48916 5.50487 5.54700 5.58696 5.67638 5.68631 5.83209 5.93505 5.94835 6.05987 6.08565 6.14202 6.17974 6.24619 6.39661 6.43296 6.44886 6.48196 6.66573 6.78609 6.83410 7.00490 7.03394 7.05678 7.59601 7.75695 7.83004 8.48478 9.59486 10.19973 10.54209 11.51713 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.002203 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.419599 B =12707.758938 C =13137.118958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.133 5.133 3 N -0.057 5.057 4 N -0.252 5.252 5 C 0.137 3.863 6 C 0.613 3.387 7 O -0.513 6.513 8 N -0.583 5.583 9 C 0.082 3.918 10 C -0.131 4.131 11 C -0.073 4.073 12 C -0.064 4.064 13 C -0.137 4.137 14 C -0.138 4.138 15 C 0.162 3.838 16 N -0.730 5.730 17 C -0.234 4.234 18 H 0.069 0.931 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.134 4.134 26 C 0.113 3.887 27 N -0.248 5.248 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.016 0.984 44 H 0.384 0.616 45 H 0.253 0.747 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.773 3.736 13.540 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.046 5.046 3 N -0.050 5.050 4 N -0.127 5.127 5 C -0.147 4.147 6 C 0.395 3.605 7 O -0.385 6.385 8 N -0.316 5.316 9 C -0.040 4.040 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.064 4.064 13 C -0.195 4.195 14 C -0.196 4.196 15 C 0.034 3.966 16 N -0.375 5.375 17 C -0.365 4.365 18 H 0.087 0.913 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.172 4.172 26 C -0.008 4.008 27 N -0.102 5.102 28 H 0.125 0.875 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.219 0.781 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.078 3.501 13.676 30.537 hybrid contribution 1.063 -0.533 -0.396 1.253 sum -26.015 2.968 13.280 29.359 Atomic orbital electron populations 1.22590 0.68339 1.07321 1.06591 1.50248 1.11183 1.00636 1.42551 1.78968 0.96684 1.14209 1.15186 1.76006 1.09388 1.10102 1.17173 1.25340 0.93144 0.90195 1.05983 1.16174 0.80630 0.85437 0.78299 1.90846 1.84993 1.13095 1.49599 1.47882 1.04491 1.11603 1.67656 1.22587 1.03843 0.79507 0.98110 1.22102 0.95838 1.01745 0.97224 1.21129 0.94935 0.94711 0.98464 1.20678 0.95429 0.96129 0.94209 1.21850 1.00501 0.94664 1.02441 1.21891 0.99271 1.00067 0.98322 1.20743 0.88749 0.96210 0.90898 1.42441 1.15638 1.63543 1.15831 1.19285 0.91975 1.25180 1.00061 0.91284 1.24718 0.98704 1.01172 0.96648 1.69664 1.37159 1.45434 1.06140 0.86139 0.84554 0.78470 0.77194 1.20624 1.21992 1.21995 1.22128 1.00277 0.97502 0.97279 1.21842 0.83810 0.96358 0.98788 1.75106 1.02401 1.14340 1.18374 0.87490 0.86682 0.86462 0.90859 0.86246 0.89980 0.91304 0.90993 0.91585 0.93511 0.93166 0.92970 0.93709 0.91687 0.96191 0.96655 0.78063 0.93684 0.90936 0.89451 0.90746 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.15 11.62 59.85 0.70 0.84 16 2 N -0.13 -1.06 4.39 -16.65 -0.07 -1.13 16 3 N -0.06 -0.56 13.23 60.35 0.80 0.24 16 4 N -0.25 -2.84 9.07 32.10 0.29 -2.55 16 5 C 0.14 1.69 7.80 -156.24 -1.22 0.47 16 6 C 0.61 8.26 7.70 -12.26 -0.09 8.17 16 7 O -0.51 -8.28 16.52 5.34 0.09 -8.19 16 8 N -0.58 -6.84 2.97 -173.82 -0.52 -7.36 16 9 C 0.08 0.85 6.11 -3.71 -0.02 0.83 16 10 C -0.13 -1.43 4.65 -26.61 -0.12 -1.56 16 11 C -0.07 -0.91 1.51 -90.58 -0.14 -1.04 16 12 C -0.06 -0.99 0.33 -154.51 -0.05 -1.05 16 13 C -0.14 -2.14 7.95 37.16 0.30 -1.84 16 14 C -0.14 -2.21 7.60 37.15 0.28 -1.93 16 15 C 0.16 3.18 4.80 -4.04 -0.02 3.17 16 16 N -0.73 -18.26 5.00 -59.91 -0.30 -18.56 16 17 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 20 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 21 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 C -0.13 -1.64 4.65 -26.61 -0.12 -1.76 16 26 C 0.11 1.27 6.44 -3.71 -0.02 1.24 16 27 N -0.25 -2.79 12.17 32.11 0.39 -2.40 16 28 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.12 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.12 1.27 4.18 -65.03 -0.27 0.99 16 33 H 0.08 0.84 6.36 -51.92 -0.33 0.51 16 34 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.22 6.86 -51.93 -0.36 0.87 16 37 H 0.05 0.61 6.40 -51.93 -0.33 0.28 16 38 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.05 0.83 6.46 -51.93 -0.34 0.49 16 40 H 0.04 0.62 6.46 -51.93 -0.34 0.29 16 41 H 0.06 1.23 6.86 -51.93 -0.36 0.87 16 42 H 0.02 0.40 6.40 -51.92 -0.33 0.07 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.38 10.07 5.36 -40.82 -0.22 9.85 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 47 H 0.09 1.11 6.36 -51.93 -0.33 0.78 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.09 1.12 7.00 -51.93 -0.36 0.75 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -35.17 376.93 -5.89 -41.06 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.17 Total: 5.00 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -0.79 Total: -1.76 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 1.32 Total: -59.44 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.17 -5.89 -41.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101565023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.117 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds