Wall clock time and date at job start Tue Mar 31 2020 20:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28718 * 125.32232 * 2 1 4 4 N 1.28985 * 108.99068 * 180.02562 * 3 2 1 5 5 C 1.34191 * 107.24895 * 0.02562 * 4 3 2 6 6 C 1.48005 * 126.69564 * 179.97438 * 5 4 3 7 7 O 1.21535 * 119.99751 * 172.45616 * 6 5 4 8 8 N 1.34773 * 120.00084 * 352.45163 * 6 5 4 9 9 C 1.46926 * 120.63055 * 353.01660 * 8 6 5 10 10 C 1.53196 * 108.77344 * 233.58446 * 9 8 6 11 11 C 1.53042 * 109.31288 * 305.36435 * 10 9 8 12 12 C 1.53002 * 109.45766 * 181.38497 * 11 10 9 13 13 C 1.53002 * 109.47046 * 59.97352 * 12 11 10 14 14 C 1.52995 * 109.47240 * 299.97209 * 12 11 10 15 15 C 1.52998 * 109.47042 * 179.97438 * 12 11 10 16 16 N 1.46498 * 109.47552 * 179.97438 * 15 12 11 17 17 C 1.36931 * 120.00216 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00457 * 359.97438 * 17 16 15 19 19 C 1.38817 * 120.00100 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99860 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00175 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46803 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47062 * 119.99397 * 21 19 17 24 24 H 1.48501 * 109.46538 * 239.99488 * 21 19 17 25 25 C 1.53038 * 109.52783 * 61.37194 * 11 10 9 26 26 C 1.46925 * 120.63168 * 172.99084 * 8 6 5 27 27 N 1.28872 * 125.31922 * 180.31968 * 2 1 3 28 28 H 1.08999 * 109.46859 * 89.97018 * 1 2 3 29 29 H 1.08995 * 109.46991 * 209.97352 * 1 2 3 30 30 H 1.09000 * 109.46727 * 329.97597 * 1 2 3 31 31 H 1.08997 * 109.58805 * 113.79652 * 9 8 6 32 32 H 1.08999 * 109.70244 * 353.44118 * 9 8 6 33 33 H 1.09007 * 109.49785 * 185.41200 * 10 9 8 34 34 H 1.09005 * 109.49660 * 65.31965 * 10 9 8 35 35 H 1.08997 * 109.45607 * 301.35521 * 11 10 9 36 36 H 1.09003 * 109.46843 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.47472 * 299.99996 * 13 12 11 38 38 H 1.09008 * 109.47159 * 60.00027 * 13 12 11 39 39 H 1.08996 * 109.47294 * 300.00300 * 14 12 11 40 40 H 1.09001 * 109.47155 * 60.00592 * 14 12 11 41 41 H 1.09003 * 109.47011 * 180.02562 * 14 12 11 42 42 H 1.09008 * 109.46903 * 59.99826 * 15 12 11 43 43 H 1.09001 * 109.47228 * 300.00802 * 15 12 11 44 44 H 0.97001 * 119.99714 * 0.02562 * 16 15 12 45 45 H 0.96996 * 120.00350 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.49760 * 58.57993 * 25 11 10 47 47 H 1.08990 * 109.50035 * 178.67460 * 25 11 10 48 48 H 1.08999 * 109.58734 * 246.20638 * 26 8 6 49 49 H 1.09004 * 109.58270 * 6.48434 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0015 6 6 4.6693 -1.5195 -0.0029 7 8 4.5523 -2.7214 0.1346 8 7 5.8923 -0.9747 -0.1567 9 6 6.0417 0.4517 -0.4758 10 6 6.9169 0.5882 -1.7257 11 6 8.2399 -0.1473 -1.5000 12 6 9.1307 0.0161 -2.7332 13 6 9.4065 1.5023 -2.9698 14 6 8.4226 -0.5721 -3.9553 15 6 10.4536 -0.7186 -2.5077 16 7 11.3064 -0.5627 -3.6887 17 6 12.5482 -1.1389 -3.7174 18 1 12.8993 -1.7080 -2.8692 19 6 13.3564 -0.9908 -4.8362 20 7 12.9288 -0.2969 -5.8697 21 14 15.0508 -1.7762 -4.8751 22 1 15.2920 -2.4962 -3.5990 23 1 15.1262 -2.7349 -6.0067 24 1 16.0813 -0.7214 -5.0504 25 6 7.9647 -1.6340 -1.2632 26 6 7.1017 -1.7957 -0.0079 27 7 2.2101 -1.0515 -0.0059 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 6.5160 0.9655 0.3604 32 1 5.0621 0.8903 -0.6659 33 1 7.1151 1.6428 -1.9176 34 1 6.4000 0.1532 -2.5811 35 1 8.7445 0.2719 -0.6295 36 1 10.0415 1.6186 -3.8482 37 1 8.4640 2.0257 -3.1305 38 1 9.9110 1.9214 -2.0991 39 1 8.2261 -1.6309 -3.7867 40 1 7.4802 -0.0487 -4.1161 41 1 9.0575 -0.4561 -4.8338 42 1 10.2570 -1.7774 -2.3391 43 1 10.9580 -0.2997 -1.6369 44 1 10.9912 -0.0514 -4.4503 45 1 13.4933 -0.1937 -6.6517 46 1 7.4379 -2.0479 -2.1230 47 1 8.9086 -2.1613 -1.1259 48 1 7.6624 -1.4653 0.8665 49 1 6.8204 -2.8420 0.1124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101565023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:55 Heat of formation + Delta-G solvation = 92.836323 kcal Electronic energy + Delta-G solvation = -29856.119573 eV Core-core repulsion = 25856.391459 eV Total energy + Delta-G solvation = -3999.728114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.58856 -41.48315 -39.94189 -37.52269 -36.37455 -35.48314 -34.38658 -33.09520 -32.42916 -31.36269 -29.77960 -28.14755 -27.57819 -27.12992 -25.61943 -24.73790 -24.27595 -23.44317 -22.42108 -20.86671 -19.59693 -19.14088 -18.75958 -18.67197 -17.81019 -17.44879 -16.66077 -16.48544 -16.07051 -15.65786 -15.44667 -15.39570 -15.21257 -14.95106 -14.69552 -14.43307 -14.19664 -14.16337 -14.08951 -13.94016 -13.37087 -13.20170 -13.05927 -12.99394 -12.82498 -12.74810 -12.60747 -12.44198 -12.27862 -12.09317 -12.04585 -11.91884 -11.84556 -11.70847 -11.54608 -11.41455 -11.21989 -11.01394 -10.87313 -10.71376 -9.78325 -8.90716 -7.91760 -5.18039 -0.19093 0.20910 0.79443 1.47497 1.47967 1.58035 1.61131 1.82307 2.58098 2.65868 2.99444 3.41753 3.67831 3.73403 3.80177 3.89341 4.04120 4.14878 4.21695 4.24045 4.31738 4.34042 4.40042 4.41186 4.44836 4.57327 4.62535 4.64522 4.84448 4.89068 4.94891 4.95744 4.97800 5.03198 5.04745 5.08481 5.16570 5.19295 5.27274 5.30239 5.34686 5.42225 5.51546 5.57814 5.68129 5.71725 6.09435 6.31835 6.69180 7.01811 7.38061 8.18406 8.40659 9.32271 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.002203 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.419599 B =12707.758938 C =13137.118958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.061 5.061 4 N -0.260 5.260 5 C 0.120 3.880 6 C 0.611 3.389 7 O -0.550 6.550 8 N -0.579 5.579 9 C 0.086 3.914 10 C -0.125 4.125 11 C -0.064 4.064 12 C -0.054 4.054 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.158 3.842 16 N -0.741 5.741 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.079 4.079 20 N -0.970 5.970 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.294 1.294 25 C -0.129 4.129 26 C 0.117 3.883 27 N -0.266 5.266 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.376 0.624 45 H 0.249 0.751 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.369 4.560 15.147 32.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.029 5.029 3 N -0.054 5.054 4 N -0.134 5.134 5 C -0.163 4.163 6 C 0.393 3.607 7 O -0.426 6.426 8 N -0.311 5.311 9 C -0.036 4.036 10 C -0.163 4.163 11 C -0.083 4.083 12 C -0.055 4.055 13 C -0.190 4.190 14 C -0.189 4.189 15 C 0.032 3.968 16 N -0.384 5.384 17 C -0.369 4.369 18 H 0.091 0.909 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.223 1.223 24 H -0.221 1.221 25 C -0.167 4.167 26 C -0.005 4.005 27 N -0.121 5.121 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.034 0.966 44 H 0.209 0.791 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.113 0.887 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.690 4.347 15.322 32.814 hybrid contribution 1.388 -0.772 -0.859 1.806 sum -27.302 3.575 14.463 31.102 Atomic orbital electron populations 1.23276 0.64979 1.09514 1.08707 1.50780 1.12702 0.99432 1.39955 1.78891 0.96471 1.14574 1.15472 1.75946 1.10303 1.09496 1.17655 1.25102 0.93139 0.90528 1.07563 1.16369 0.81354 0.85164 0.77795 1.90817 1.85619 1.14595 1.51523 1.47971 1.04144 1.12202 1.66762 1.22662 1.03979 0.78670 0.98332 1.22055 0.94694 1.02192 0.97319 1.21052 0.95170 0.95079 0.97030 1.20580 0.93776 0.95550 0.95554 1.21799 1.01322 0.94858 1.00998 1.21820 0.99632 1.00364 0.97104 1.20938 0.90101 0.96831 0.88913 1.42652 1.15535 1.63079 1.17146 1.19681 0.93048 1.24323 0.99889 0.90883 1.25520 1.02488 1.02491 0.96629 1.69820 1.38410 1.47267 1.06686 0.85108 0.80094 0.77381 0.77429 1.19115 1.22292 1.22137 1.22044 0.99985 0.97296 0.97383 1.21828 0.83610 0.96131 0.98892 1.75067 1.02471 1.15652 1.18905 0.85288 0.85090 0.83765 0.89082 0.86075 0.88539 0.92081 0.89722 0.95164 0.90624 0.92619 0.93263 0.91368 0.95139 0.96146 0.96551 0.79082 0.94188 0.92218 0.90100 0.88654 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.03 11.62 127.77 1.49 1.51 16 2 N -0.11 -1.58 4.39 -206.59 -0.91 -2.49 16 3 N -0.06 -1.07 13.23 37.02 0.49 -0.58 16 4 N -0.26 -5.45 9.07 -52.36 -0.47 -5.93 16 5 C 0.12 2.84 7.80 137.15 1.07 3.91 16 6 C 0.61 16.15 7.70 86.83 0.67 16.82 16 7 O -0.55 -17.92 16.52 -3.83 -0.06 -17.98 16 8 N -0.58 -12.78 2.97 -822.13 -2.44 -15.22 16 9 C 0.09 1.56 6.11 86.36 0.53 2.09 16 10 C -0.12 -2.40 4.65 30.67 0.14 -2.26 16 11 C -0.06 -1.46 1.51 -10.77 -0.02 -1.48 16 12 C -0.05 -1.64 0.33 -52.18 -0.02 -1.65 16 13 C -0.13 -3.98 7.95 71.98 0.57 -3.41 16 14 C -0.13 -4.21 7.60 71.98 0.55 -3.66 16 15 C 0.16 6.22 4.80 86.38 0.41 6.63 16 16 N -0.74 -37.71 5.00 -343.45 -1.72 -39.43 16 17 C -0.24 -13.43 9.99 84.04 0.84 -12.59 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 21 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 25 C -0.13 -3.01 4.65 30.67 0.14 -2.87 16 26 C 0.12 2.46 6.44 86.36 0.56 3.02 16 27 N -0.27 -5.68 12.17 -52.31 -0.64 -6.31 16 28 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.14 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.12 2.30 4.18 -19.33 -0.08 2.22 16 33 H 0.10 1.63 6.36 -2.38 -0.02 1.62 16 34 H 0.06 1.30 6.51 -2.38 -0.02 1.29 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 37 H 0.07 1.81 6.40 -2.39 -0.02 1.79 16 38 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.05 1.57 6.46 -2.39 -0.02 1.56 16 40 H 0.07 1.83 6.46 -2.39 -0.02 1.81 16 41 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 42 H 0.02 0.82 6.40 -2.38 -0.02 0.80 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.38 20.35 5.36 -92.71 -0.50 19.85 16 45 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.06 1.55 6.51 -2.38 -0.02 1.54 16 47 H 0.08 2.00 6.36 -2.39 -0.02 1.98 16 48 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.08 1.99 7.00 -2.38 -0.02 1.97 16 Total: -1.00 -77.64 376.93 4.38 -73.26 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.42 Total: 23.74 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 7.40 Total: 1.89 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -5.41 Total: -129.99 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.06 Total: -17.98 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -77.64 4.38 -73.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101565023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.097 kcal (2) G-P(sol) polarization free energy of solvation -77.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds