Wall clock time and date at job start Tue Mar 31 2020 20:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47173 * 2 1 4 4 H 1.09001 * 109.47132 * 304.93396 * 3 2 1 5 5 C 1.50706 * 109.47098 * 184.93870 * 3 2 1 6 6 O 1.21277 * 119.99762 * 262.55775 * 5 3 2 7 7 N 1.34774 * 120.00028 * 82.56135 * 5 3 2 8 8 C 1.47583 * 134.49429 * 179.97438 * 7 5 3 9 9 C 1.53939 * 86.11774 * 155.35980 * 8 7 5 10 10 N 1.46509 * 113.74179 * 137.95285 * 9 8 7 11 11 C 1.35309 * 125.86756 * 275.32678 * 10 9 8 12 12 C 1.35351 * 106.17459 * 180.11768 * 11 10 9 13 13 C 1.50691 * 126.75140 * 179.85481 * 12 11 10 14 14 N 1.46501 * 109.47613 * 94.70999 * 13 12 11 15 15 C 1.36937 * 120.00318 * 179.72170 * 14 13 12 16 16 H 1.07993 * 119.99972 * 0.27676 * 15 14 13 17 17 C 1.38812 * 119.99655 * 180.27363 * 15 14 13 18 18 N 1.31614 * 120.00415 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99796 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46917 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47039 * 119.99928 * 19 17 15 22 22 H 1.48494 * 109.47245 * 240.00509 * 19 17 15 23 23 N 1.33770 * 106.49389 * 359.58916 * 12 11 10 24 24 N 1.28637 * 108.88950 * 0.26364 * 23 12 11 25 25 C 1.47582 * 134.49374 * 0.02562 * 7 5 3 26 26 N 1.46902 * 109.47085 * 64.93761 * 3 2 1 27 27 C 1.46898 * 110.99785 * 275.45662 * 26 3 2 28 28 C 1.46903 * 110.99904 * 39.41327 * 26 3 2 29 29 H 1.09003 * 109.47252 * 281.90547 * 1 2 3 30 30 H 1.09002 * 109.47290 * 41.90600 * 1 2 3 31 31 H 1.09010 * 109.47283 * 161.90541 * 1 2 3 32 32 H 1.09006 * 109.47016 * 239.99888 * 2 1 3 33 33 H 1.08996 * 109.47204 * 120.00658 * 2 1 3 34 34 H 1.09003 * 113.76393 * 41.05529 * 8 7 5 35 35 H 1.09000 * 113.87217 * 269.67794 * 8 7 5 36 36 H 1.08998 * 113.74320 * 269.15603 * 9 8 7 37 37 H 1.08001 * 126.91171 * 359.96889 * 11 10 9 38 38 H 1.09002 * 109.47732 * 334.70738 * 13 12 11 39 39 H 1.09009 * 109.47178 * 214.70692 * 13 12 11 40 40 H 0.97005 * 119.99248 * 0.02562 * 14 13 12 41 41 H 0.96998 * 120.00060 * 180.02562 * 18 17 15 42 42 H 1.08997 * 113.77151 * 90.33435 * 25 7 5 43 43 H 1.09003 * 113.76882 * 318.93904 * 25 7 5 44 44 H 1.09002 * 109.47317 * 67.81681 * 27 26 3 45 45 H 1.09005 * 109.46602 * 187.80989 * 27 26 3 46 46 H 1.08999 * 109.47266 * 307.80826 * 27 26 3 47 47 H 1.09002 * 109.47050 * 51.69332 * 28 26 3 48 48 H 1.08996 * 109.47076 * 171.69291 * 28 26 3 49 49 H 1.08998 * 109.46714 * 291.69330 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6063 1.9811 -0.8425 5 6 3.5420 1.4442 -0.1223 6 8 4.2311 1.5510 0.8700 7 7 4.1196 1.3271 -1.3344 8 6 5.5139 1.2919 -1.8167 9 6 4.9645 0.5201 -3.0300 10 7 5.5423 0.9420 -4.3085 11 6 5.1197 1.9813 -5.0650 12 6 5.9265 2.0094 -6.1514 13 6 5.8606 2.9845 -7.2984 14 7 6.7925 4.0884 -7.0552 15 6 6.9105 5.0994 -7.9712 16 1 6.3133 5.0853 -8.8709 17 6 7.7977 6.1423 -7.7433 18 7 8.5259 6.1593 -6.6471 19 14 7.9593 7.5212 -8.9933 20 1 7.0382 7.2687 -10.1305 21 1 7.6102 8.8141 -8.3518 22 1 9.3572 7.5769 -9.4910 23 7 6.7974 1.0049 -6.0038 24 7 6.5432 0.3917 -4.9019 25 6 3.6117 1.1836 -2.7126 26 7 1.6500 2.0997 1.2546 27 6 0.2860 2.6376 1.1652 28 6 1.7799 1.1803 2.3930 29 1 -0.3634 0.2120 1.0056 30 1 -0.3634 0.7648 -0.6864 31 1 -0.3634 -0.9769 -0.3192 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 6.1817 0.7036 -1.1873 35 1 5.9192 2.2725 -2.0665 36 1 4.9665 -0.5620 -2.8993 37 1 4.3016 2.6518 -4.8470 38 1 4.8472 3.3768 -7.3842 39 1 6.1330 2.4763 -8.2235 40 1 7.3292 4.1008 -6.2472 41 1 9.1456 6.8883 -6.4877 42 1 3.4570 2.1331 -3.2250 43 1 2.7601 0.5086 -2.7989 44 1 -0.4259 1.8145 1.1035 45 1 0.0730 3.2365 2.0507 46 1 0.1989 3.2610 0.2754 47 1 2.7759 0.7375 2.3906 48 1 1.6286 1.7292 3.3224 49 1 1.0316 0.3920 2.3105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105268808.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:20 Heat of formation + Delta-G solvation = 145.653955 kcal Electronic energy + Delta-G solvation = -29070.461185 eV Core-core repulsion = 25073.023415 eV Total energy + Delta-G solvation = -3997.437770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.14193 -41.00782 -39.34093 -37.44378 -35.01279 -33.58459 -32.82761 -31.85695 -30.17938 -29.94377 -28.42171 -27.90718 -26.92730 -25.84905 -24.13243 -23.38182 -22.83866 -21.80935 -20.97286 -20.62316 -19.31202 -18.09062 -17.59984 -17.03572 -17.02434 -16.24548 -16.00019 -15.71205 -15.27564 -14.82201 -14.78135 -14.46081 -14.09635 -14.02252 -13.68458 -13.43002 -13.27321 -13.22173 -13.00989 -12.87974 -12.67811 -12.58634 -12.46118 -12.15617 -12.13232 -12.03410 -11.78693 -11.74575 -11.42562 -11.30156 -10.90200 -10.82938 -10.53334 -10.11226 -10.05494 -9.92205 -9.74439 -9.28516 -8.92310 -8.87810 -8.65865 -6.92383 -5.74177 -3.04095 1.68932 1.87566 2.12662 2.61629 2.85351 3.41590 3.45687 3.46223 3.51060 3.53610 3.75392 4.15440 4.19952 4.28141 4.34245 4.61207 4.61258 4.64751 4.71110 4.73135 4.80240 4.82765 4.91953 5.00728 5.08634 5.10545 5.16481 5.20130 5.24937 5.31468 5.35515 5.40949 5.44708 5.49264 5.60622 5.61156 5.72178 5.76149 6.15937 6.35325 6.45122 6.57120 6.61672 6.66486 6.75149 7.10812 7.71472 7.75187 8.42840 8.77115 9.54816 10.10096 10.45733 11.48545 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002207 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.625387 B =12683.382929 C =13454.224927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.151 4.151 3 C 0.073 3.927 4 H 0.102 0.898 5 C 0.553 3.447 6 O -0.513 6.513 7 N -0.645 5.645 8 C 0.106 3.894 9 C 0.114 3.886 10 N -0.295 5.295 11 C -0.046 4.046 12 C 0.000 4.000 13 C 0.232 3.768 14 N -0.726 5.726 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.291 1.291 23 N -0.250 5.250 24 N -0.090 5.090 25 C 0.098 3.902 26 N -0.524 5.524 27 C 0.010 3.990 28 C 0.019 3.981 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.189 0.811 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.324 -14.909 16.400 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C -0.040 4.040 4 H 0.120 0.880 5 C 0.341 3.659 6 O -0.386 6.386 7 N -0.384 5.384 8 C -0.018 4.018 9 C 0.010 3.990 10 N -0.089 5.089 11 C -0.196 4.196 12 C -0.138 4.138 13 C 0.103 3.897 14 N -0.371 5.371 15 C -0.371 4.371 16 H 0.092 0.908 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 N -0.118 5.118 24 N -0.069 5.069 25 C -0.026 4.026 26 N -0.248 5.248 27 C -0.138 4.138 28 C -0.128 4.128 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.162 0.838 37 H 0.205 0.795 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -19.710 -15.456 17.184 30.375 hybrid contribution -0.988 1.098 -0.458 1.546 sum -20.698 -14.359 16.725 30.238 Atomic orbital electron populations 1.22076 0.94617 1.02464 1.02252 1.22155 0.97138 0.95869 1.03897 1.21688 0.91695 0.95507 0.95079 0.88036 1.20176 0.89914 0.75033 0.80745 1.90711 1.64772 1.47727 1.35341 1.49684 1.08892 1.74627 1.05172 1.23593 0.85548 1.01350 0.91308 1.23680 0.94046 1.02042 0.79266 1.47115 1.22950 1.21716 1.17167 1.23315 1.05959 0.95908 0.94408 1.22490 0.94271 0.98149 0.98862 1.18963 0.94653 0.85696 0.90413 1.42318 1.47343 1.22223 1.25205 1.19263 1.18613 0.99031 1.00179 0.90815 1.24767 0.99197 0.99154 0.97809 1.69686 1.28582 1.33490 1.26179 0.86093 0.77437 0.82047 0.80448 1.20459 1.21915 1.21842 1.75128 1.21114 1.06967 1.08586 1.78306 1.03590 1.21069 1.03904 1.23662 0.96243 1.01657 0.81071 1.61749 1.24978 1.36143 1.01885 1.22789 0.88083 0.99771 1.03110 1.22565 1.02230 0.94906 0.93115 0.91825 0.92043 0.92016 0.90862 0.90211 0.88112 0.88204 0.83766 0.79452 0.94430 0.94267 0.78104 0.93529 0.87795 0.87953 0.93768 0.91007 0.91341 0.90076 0.91326 0.95060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 8.15 37.16 0.30 -0.31 16 2 C -0.15 -0.79 4.86 -26.74 -0.13 -0.92 16 3 C 0.07 0.53 2.08 -68.86 -0.14 0.38 16 4 H 0.10 0.60 7.49 -51.93 -0.39 0.21 16 5 C 0.55 5.67 7.23 -10.98 -0.08 5.60 16 6 O -0.51 -7.35 15.60 5.56 0.09 -7.26 16 7 N -0.65 -5.43 3.61 -178.52 -0.64 -6.08 16 8 C 0.11 0.98 8.63 -2.98 -0.03 0.95 16 9 C 0.11 0.90 5.16 -70.13 -0.36 0.54 16 10 N -0.29 -3.70 3.54 -56.28 -0.20 -3.90 16 11 C -0.05 -0.63 10.71 -17.05 -0.18 -0.81 16 12 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 13 C 0.23 4.71 6.82 -5.20 -0.04 4.67 16 14 N -0.73 -18.68 5.59 -61.09 -0.34 -19.02 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 19 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 N -0.25 -4.90 12.41 33.28 0.41 -4.49 16 24 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 25 C 0.10 0.55 7.90 -2.96 -0.02 0.53 16 26 N -0.52 -4.34 4.65 -244.58 -1.14 -5.48 16 27 C 0.01 0.06 8.94 60.06 0.54 0.59 16 28 C 0.02 0.15 7.97 60.07 0.48 0.63 16 29 H 0.06 0.26 4.88 -51.93 -0.25 0.01 16 30 H 0.06 0.22 7.57 -51.93 -0.39 -0.18 16 31 H 0.06 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.07 0.32 7.89 -51.93 -0.41 -0.09 16 33 H 0.08 0.49 6.12 -51.93 -0.32 0.17 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.19 1.87 6.72 -52.49 -0.35 1.52 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 40 H 0.39 10.74 7.66 -40.82 -0.31 10.43 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.10 0.55 6.31 -51.93 -0.33 0.23 16 43 H 0.10 0.29 7.89 -51.93 -0.41 -0.11 16 44 H 0.04 0.20 4.46 -51.93 -0.23 -0.04 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.37 7.86 -51.93 -0.41 -0.04 16 47 H 0.08 0.78 6.31 -51.93 -0.33 0.45 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.03 0.18 5.30 -51.93 -0.28 -0.09 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -36.87 390.77 -7.23 -44.09 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.34 Total: 3.46 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.46 Total: 3.98 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.39 Total: -67.57 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.26 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.87 -7.23 -44.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105268808.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.748 kcal (2) G-P(sol) polarization free energy of solvation -36.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds