Wall clock time and date at job start Tue Mar 31 2020 20:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47173 * 2 1 4 4 H 1.09001 * 109.47132 * 304.93396 * 3 2 1 5 5 C 1.50706 * 109.47098 * 184.93870 * 3 2 1 6 6 O 1.21277 * 119.99762 * 262.55775 * 5 3 2 7 7 N 1.34774 * 120.00028 * 82.56135 * 5 3 2 8 8 C 1.47583 * 134.49429 * 179.97438 * 7 5 3 9 9 C 1.53939 * 86.11774 * 155.35980 * 8 7 5 10 10 N 1.46509 * 113.74179 * 137.95285 * 9 8 7 11 11 C 1.35309 * 125.86756 * 275.32678 * 10 9 8 12 12 C 1.35351 * 106.17459 * 180.11768 * 11 10 9 13 13 C 1.50691 * 126.75140 * 179.85481 * 12 11 10 14 14 N 1.46501 * 109.47613 * 94.70999 * 13 12 11 15 15 C 1.36937 * 120.00318 * 179.72170 * 14 13 12 16 16 H 1.07993 * 119.99972 * 0.27676 * 15 14 13 17 17 C 1.38812 * 119.99655 * 180.27363 * 15 14 13 18 18 N 1.31614 * 120.00415 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99796 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46917 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47039 * 119.99928 * 19 17 15 22 22 H 1.48494 * 109.47245 * 240.00509 * 19 17 15 23 23 N 1.33770 * 106.49389 * 359.58916 * 12 11 10 24 24 N 1.28637 * 108.88950 * 0.26364 * 23 12 11 25 25 C 1.47582 * 134.49374 * 0.02562 * 7 5 3 26 26 N 1.46902 * 109.47085 * 64.93761 * 3 2 1 27 27 C 1.46898 * 110.99785 * 275.45662 * 26 3 2 28 28 C 1.46903 * 110.99904 * 39.41327 * 26 3 2 29 29 H 1.09003 * 109.47252 * 281.90547 * 1 2 3 30 30 H 1.09002 * 109.47290 * 41.90600 * 1 2 3 31 31 H 1.09010 * 109.47283 * 161.90541 * 1 2 3 32 32 H 1.09006 * 109.47016 * 239.99888 * 2 1 3 33 33 H 1.08996 * 109.47204 * 120.00658 * 2 1 3 34 34 H 1.09003 * 113.76393 * 41.05529 * 8 7 5 35 35 H 1.09000 * 113.87217 * 269.67794 * 8 7 5 36 36 H 1.08998 * 113.74320 * 269.15603 * 9 8 7 37 37 H 1.08001 * 126.91171 * 359.96889 * 11 10 9 38 38 H 1.09002 * 109.47732 * 334.70738 * 13 12 11 39 39 H 1.09009 * 109.47178 * 214.70692 * 13 12 11 40 40 H 0.97005 * 119.99248 * 0.02562 * 14 13 12 41 41 H 0.96998 * 120.00060 * 180.02562 * 18 17 15 42 42 H 1.08997 * 113.77151 * 90.33435 * 25 7 5 43 43 H 1.09003 * 113.76882 * 318.93904 * 25 7 5 44 44 H 1.09002 * 109.47317 * 67.81681 * 27 26 3 45 45 H 1.09005 * 109.46602 * 187.80989 * 27 26 3 46 46 H 1.08999 * 109.47266 * 307.80826 * 27 26 3 47 47 H 1.09002 * 109.47050 * 51.69332 * 28 26 3 48 48 H 1.08996 * 109.47076 * 171.69291 * 28 26 3 49 49 H 1.08998 * 109.46714 * 291.69330 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6063 1.9811 -0.8425 5 6 3.5420 1.4442 -0.1223 6 8 4.2311 1.5510 0.8700 7 7 4.1196 1.3271 -1.3344 8 6 5.5139 1.2919 -1.8167 9 6 4.9645 0.5201 -3.0300 10 7 5.5423 0.9420 -4.3085 11 6 5.1197 1.9813 -5.0650 12 6 5.9265 2.0094 -6.1514 13 6 5.8606 2.9845 -7.2984 14 7 6.7925 4.0884 -7.0552 15 6 6.9105 5.0994 -7.9712 16 1 6.3133 5.0853 -8.8709 17 6 7.7977 6.1423 -7.7433 18 7 8.5259 6.1593 -6.6471 19 14 7.9593 7.5212 -8.9933 20 1 7.0382 7.2687 -10.1305 21 1 7.6102 8.8141 -8.3518 22 1 9.3572 7.5769 -9.4910 23 7 6.7974 1.0049 -6.0038 24 7 6.5432 0.3917 -4.9019 25 6 3.6117 1.1836 -2.7126 26 7 1.6500 2.0997 1.2546 27 6 0.2860 2.6376 1.1652 28 6 1.7799 1.1803 2.3930 29 1 -0.3634 0.2120 1.0056 30 1 -0.3634 0.7648 -0.6864 31 1 -0.3634 -0.9769 -0.3192 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 6.1817 0.7036 -1.1873 35 1 5.9192 2.2725 -2.0665 36 1 4.9665 -0.5620 -2.8993 37 1 4.3016 2.6518 -4.8470 38 1 4.8472 3.3768 -7.3842 39 1 6.1330 2.4763 -8.2235 40 1 7.3292 4.1008 -6.2472 41 1 9.1456 6.8883 -6.4877 42 1 3.4570 2.1331 -3.2250 43 1 2.7601 0.5086 -2.7989 44 1 -0.4259 1.8145 1.1035 45 1 0.0730 3.2365 2.0507 46 1 0.1989 3.2610 0.2754 47 1 2.7759 0.7375 2.3906 48 1 1.6286 1.7292 3.3224 49 1 1.0316 0.3920 2.3105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105268808.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:19 Heat of formation + Delta-G solvation = 116.491298 kcal Electronic energy + Delta-G solvation = -29071.725772 eV Core-core repulsion = 25073.023415 eV Total energy + Delta-G solvation = -3998.702358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.30764 -41.71443 -39.97513 -38.19212 -36.78335 -34.79955 -33.60729 -33.25903 -31.61882 -30.88434 -28.93963 -28.48994 -27.84751 -27.27920 -25.10806 -24.71226 -23.80253 -22.59564 -22.15604 -21.50922 -19.95439 -19.40468 -18.76616 -18.19112 -17.66714 -17.20709 -16.74128 -16.56770 -16.28037 -16.12069 -15.82974 -15.43675 -15.28417 -15.05657 -14.83941 -14.56920 -14.29020 -13.93845 -13.83033 -13.75993 -13.51927 -13.34998 -13.11340 -12.96430 -12.93214 -12.79670 -12.72862 -12.59569 -12.54588 -12.45806 -12.22671 -12.01882 -11.85964 -11.81025 -11.76878 -11.06298 -10.95688 -10.82783 -10.20667 -9.99455 -9.16678 -8.99657 -7.91867 -5.21837 0.57530 1.06340 1.38796 1.47460 1.52099 1.53703 1.62873 1.84749 2.60939 2.76281 2.89052 3.15671 3.39199 3.44804 3.60091 3.69067 3.79405 3.93957 3.96978 4.11347 4.17910 4.25368 4.28536 4.30863 4.34185 4.36580 4.41681 4.46209 4.52818 4.57440 4.65169 4.67857 4.73666 4.78718 4.90267 4.99893 5.03217 5.09050 5.14259 5.15836 5.21529 5.36484 5.53830 5.65275 5.93621 6.07670 6.28082 6.43401 7.01507 7.34958 7.52830 8.07187 8.31910 9.32283 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002207 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.625387 B =12683.382929 C =13454.224927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.146 4.146 3 C 0.078 3.922 4 H 0.123 0.877 5 C 0.546 3.454 6 O -0.565 6.565 7 N -0.642 5.642 8 C 0.096 3.904 9 C 0.112 3.888 10 N -0.277 5.277 11 C -0.016 4.016 12 C -0.035 4.035 13 C 0.234 3.766 14 N -0.740 5.740 15 C -0.238 4.238 16 H 0.087 0.913 17 C -0.080 4.080 18 N -0.974 5.974 19 Si 0.977 3.023 20 H -0.259 1.259 21 H -0.293 1.293 22 H -0.299 1.299 23 N -0.297 5.297 24 N -0.108 5.108 25 C 0.109 3.891 26 N -0.551 5.551 27 C 0.011 3.989 28 C 0.026 3.974 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.230 0.770 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.116 0.884 43 H 0.145 0.855 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.870 -15.395 15.710 33.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C -0.034 4.034 4 H 0.140 0.860 5 C 0.337 3.663 6 O -0.442 6.442 7 N -0.379 5.379 8 C -0.029 4.029 9 C 0.010 3.990 10 N -0.071 5.071 11 C -0.167 4.167 12 C -0.174 4.174 13 C 0.106 3.894 14 N -0.383 5.383 15 C -0.370 4.370 16 H 0.104 0.896 17 C -0.272 4.272 18 N -0.625 5.625 19 Si 0.806 3.194 20 H -0.183 1.183 21 H -0.220 1.220 22 H -0.226 1.226 23 N -0.164 5.164 24 N -0.086 5.086 25 C -0.014 4.014 26 N -0.275 5.275 27 C -0.136 4.136 28 C -0.122 4.122 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.186 0.814 37 H 0.247 0.753 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.134 0.866 43 H 0.163 0.837 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -23.312 -15.998 16.454 32.713 hybrid contribution 0.074 1.165 -0.159 1.178 sum -23.238 -14.833 16.295 32.025 Atomic orbital electron populations 1.22043 0.93264 1.03323 1.02364 1.22121 0.98126 0.94283 1.03989 1.21746 0.89248 0.97089 0.95305 0.85974 1.20903 0.91184 0.73904 0.80355 1.90690 1.66089 1.50200 1.37205 1.49699 1.08567 1.73655 1.06015 1.23547 0.86490 1.00627 0.92187 1.24121 0.95097 1.03368 0.76395 1.47408 1.21428 1.20616 1.17685 1.23752 1.05214 0.95326 0.92411 1.22295 0.96235 0.98618 1.00213 1.19006 0.94517 0.84708 0.91129 1.42549 1.48153 1.23338 1.24241 1.19739 1.17655 0.99087 1.00503 0.89558 1.25637 0.99624 1.02063 0.99868 1.69859 1.29872 1.34334 1.28441 0.85016 0.77082 0.78734 0.78580 1.18343 1.22011 1.22640 1.75057 1.22728 1.08339 1.10302 1.78201 1.05085 1.21658 1.03672 1.23922 0.95893 1.02869 0.78683 1.61681 1.26638 1.36820 1.02407 1.22822 0.87110 1.00304 1.03330 1.22449 1.01263 0.95294 0.93199 0.92200 0.91015 0.91186 0.89363 0.91629 0.88601 0.90043 0.81438 0.75328 0.91499 0.95333 0.79917 0.94192 0.86601 0.83718 0.92115 0.91324 0.90662 0.92615 0.91581 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 8.15 71.98 0.59 -0.05 16 2 C -0.15 -1.10 4.86 30.59 0.15 -0.95 16 3 C 0.08 0.94 2.08 44.17 0.09 1.03 16 4 H 0.12 0.94 7.49 -2.39 -0.02 0.93 16 5 C 0.55 10.57 7.23 87.66 0.63 11.21 16 6 O -0.57 -16.61 15.60 -3.02 -0.05 -16.65 16 7 N -0.64 -9.42 3.61 -837.11 -3.02 -12.44 16 8 C 0.10 1.68 8.63 86.48 0.75 2.43 16 9 C 0.11 1.47 5.16 46.76 0.24 1.71 16 10 N -0.28 -6.36 3.54 -331.97 -1.18 -7.53 16 11 C -0.02 -0.39 10.71 83.49 0.89 0.51 16 12 C -0.04 -1.24 6.61 41.59 0.28 -0.97 16 13 C 0.23 9.30 6.82 85.63 0.58 9.89 16 14 N -0.74 -38.15 5.59 -347.18 -1.94 -40.09 16 15 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 16 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 17 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 18 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 19 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 N -0.30 -11.69 12.41 -48.61 -0.60 -12.30 16 24 N -0.11 -3.52 13.17 37.02 0.49 -3.03 16 25 C 0.11 0.75 7.90 86.49 0.68 1.43 16 26 N -0.55 -8.40 4.65 -927.72 -4.31 -12.71 16 27 C 0.01 0.10 8.94 127.69 1.14 1.25 16 28 C 0.03 0.38 7.97 127.69 1.02 1.40 16 29 H 0.06 0.31 4.88 -2.39 -0.01 0.29 16 30 H 0.07 0.18 7.57 -2.39 -0.02 0.16 16 31 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.09 0.40 7.89 -2.38 -0.02 0.38 16 33 H 0.07 0.70 6.12 -2.39 -0.01 0.69 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.23 3.48 6.72 -2.91 -0.02 3.46 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.37 21.04 7.66 -92.70 -0.71 20.33 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.12 0.62 6.31 -2.39 -0.02 0.60 16 43 H 0.15 -0.09 7.89 -2.39 -0.02 -0.11 16 44 H 0.06 0.36 4.46 -2.39 -0.01 0.35 16 45 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.07 0.59 7.86 -2.39 -0.02 0.57 16 47 H 0.05 1.12 6.31 -2.39 -0.02 1.11 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.05 0.52 5.30 -2.39 -0.01 0.51 16 Total: -1.00 -84.31 390.77 0.32 -83.99 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.27 Total: 20.99 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 8.35 Total: 12.34 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -10.28 Total: -148.93 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -84.31 0.32 -83.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105268808.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.484 kcal (2) G-P(sol) polarization free energy of solvation -84.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds