Wall clock time and date at job start Tue Mar 31 2020 20:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47178 * 2 1 4 4 H 1.08996 * 109.47411 * 57.78792 * 3 2 1 5 5 C 1.50705 * 109.47283 * 177.78503 * 3 2 1 6 6 O 1.21280 * 119.99782 * 97.22543 * 5 3 2 7 7 N 1.34773 * 119.99651 * 277.23307 * 5 3 2 8 8 C 1.47587 * 134.48934 * 179.97438 * 7 5 3 9 9 C 1.53950 * 86.11476 * 155.35392 * 8 7 5 10 10 N 1.46497 * 113.73821 * 137.95302 * 9 8 7 11 11 C 1.35315 * 125.86785 * 275.32251 * 10 9 8 12 12 C 1.35351 * 106.17623 * 180.11811 * 11 10 9 13 13 C 1.50698 * 126.75485 * 179.85360 * 12 11 10 14 14 N 1.46504 * 109.47246 * 94.71425 * 13 12 11 15 15 C 1.36937 * 119.99916 * 179.72774 * 14 13 12 16 16 H 1.07997 * 119.99746 * 0.27259 * 15 14 13 17 17 C 1.38808 * 119.99632 * 180.27467 * 15 14 13 18 18 N 1.31621 * 120.00050 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00201 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46925 * 90.00234 * 19 17 15 21 21 H 1.48499 * 109.47207 * 209.99686 * 19 17 15 22 22 H 1.48496 * 109.47372 * 330.00269 * 19 17 15 23 23 N 1.33775 * 106.49409 * 359.59690 * 12 11 10 24 24 N 1.28635 * 108.88711 * 0.25580 * 23 12 11 25 25 C 1.47582 * 134.49563 * 359.97438 * 7 5 3 26 26 N 1.46901 * 109.47256 * 297.78631 * 3 2 1 27 27 C 1.46901 * 111.00197 * 185.15007 * 26 3 2 28 28 C 1.46904 * 110.99653 * 309.09767 * 26 3 2 29 29 H 1.09001 * 109.47116 * 185.16893 * 1 2 3 30 30 H 1.09006 * 109.46629 * 305.16160 * 1 2 3 31 31 H 1.08998 * 109.47096 * 65.16113 * 1 2 3 32 32 H 1.09003 * 109.46579 * 240.00209 * 2 1 3 33 33 H 1.09000 * 109.46816 * 120.00293 * 2 1 3 34 34 H 1.08997 * 113.76937 * 41.05617 * 8 7 5 35 35 H 1.08992 * 113.76959 * 269.65847 * 8 7 5 36 36 H 1.08997 * 113.74341 * 269.14934 * 9 8 7 37 37 H 1.07993 * 126.91588 * 359.97386 * 11 10 9 38 38 H 1.08998 * 109.47082 * 334.71277 * 13 12 11 39 39 H 1.09000 * 109.47363 * 214.71607 * 13 12 11 40 40 H 0.97001 * 119.99521 * 359.97438 * 14 13 12 41 41 H 0.96995 * 120.00480 * 180.02562 * 18 17 15 42 42 H 1.08996 * 113.76685 * 90.34785 * 25 7 5 43 43 H 1.08996 * 113.76899 * 318.94519 * 25 7 5 44 44 H 1.08994 * 109.47173 * 60.31530 * 27 26 3 45 45 H 1.09000 * 109.47213 * 180.31894 * 27 26 3 46 46 H 1.09000 * 109.46715 * 300.31893 * 27 26 3 47 47 H 1.09005 * 109.47242 * 64.28901 * 28 26 3 48 48 H 1.09005 * 109.47220 * 184.28664 * 28 26 3 49 49 H 1.09001 * 109.47378 * 304.28840 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6447 1.9676 0.8694 5 6 3.5461 1.4428 0.0549 6 8 4.1900 1.5616 -0.9659 7 7 4.1772 1.3110 1.2384 8 6 5.5918 1.2691 1.6572 9 6 5.0912 1.7559 3.0292 10 7 5.7307 1.0834 4.1628 11 6 5.3525 -0.1002 4.6985 12 6 6.2083 -0.3430 5.7187 13 6 6.2038 -1.5401 6.6340 14 7 7.1338 -2.5498 6.1220 15 6 7.3027 -3.7296 6.7964 16 1 6.7470 -3.9176 7.7031 17 6 8.1880 -4.6838 6.3143 18 7 8.3508 -5.8177 6.9627 19 14 9.1486 -4.3589 4.7455 20 1 10.4341 -3.6955 5.0807 21 1 9.4207 -5.6457 4.0562 22 1 8.3546 -3.4771 3.8526 23 7 7.0624 0.6861 5.7510 24 7 6.7525 1.5140 4.8164 25 6 3.7314 1.1505 2.6361 26 7 1.5946 2.1194 -1.2253 27 6 2.1670 3.4690 -1.3190 28 6 1.9242 1.3240 -2.4156 29 1 -0.3633 -1.0235 0.0926 30 1 -0.3633 0.5919 0.8402 31 1 -0.3633 0.4317 -0.9326 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 6.2247 1.9898 1.1395 35 1 6.0151 0.2649 1.6749 36 1 5.0775 2.8410 3.1316 37 1 4.5316 -0.7245 4.3782 38 1 5.1991 -1.9604 6.6776 39 1 6.5134 -1.2345 7.6334 40 1 7.6325 -2.3810 5.3074 41 1 8.9697 -6.4843 6.6261 42 1 3.6085 0.1114 2.9414 43 1 2.8791 1.7765 2.9000 44 1 3.2547 3.4018 -1.3381 45 1 1.8165 3.9497 -2.2323 46 1 1.8544 4.0569 -0.4560 47 1 1.3707 0.3853 -2.3900 48 1 1.6525 1.8817 -3.3119 49 1 2.9939 1.1149 -2.4281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105328848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:25 Heat of formation + Delta-G solvation = 143.298724 kcal Electronic energy + Delta-G solvation = -29340.525066 eV Core-core repulsion = 25342.985165 eV Total energy + Delta-G solvation = -3997.539900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.31968 -41.29134 -39.45454 -36.96183 -35.26342 -33.89039 -33.34853 -31.96835 -30.42196 -30.18235 -28.02896 -27.70927 -27.06801 -26.19554 -24.27891 -23.63440 -22.49600 -21.83161 -21.09513 -20.68274 -19.48734 -18.30625 -17.96514 -17.41378 -16.98057 -16.30992 -16.15179 -15.78687 -15.24798 -14.94704 -14.75825 -14.49721 -14.33310 -14.14461 -13.91973 -13.54698 -13.46831 -13.20342 -13.03723 -12.85426 -12.74431 -12.54507 -12.31923 -12.24793 -12.16489 -11.96566 -11.89440 -11.63674 -11.47102 -11.25488 -11.16272 -10.91556 -10.81016 -10.60388 -10.20380 -10.07276 -9.61693 -9.48122 -9.12004 -8.92877 -8.64455 -7.26653 -5.78222 -3.14319 1.51997 1.73893 1.89745 2.45153 2.66516 3.28908 3.37208 3.39165 3.42459 3.46160 3.55142 4.00453 4.10735 4.27011 4.43186 4.48469 4.57532 4.58963 4.64857 4.70571 4.86269 4.88247 4.92570 5.00593 5.07136 5.08779 5.16817 5.19128 5.26199 5.28123 5.42592 5.49918 5.52222 5.52967 5.61348 5.61795 5.68592 5.71323 5.90645 6.16924 6.37667 6.46629 6.49265 6.49480 6.61626 6.92017 7.48373 7.95766 8.40336 8.59492 9.18033 9.90607 10.10130 11.39805 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.002492 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.803672 B =11231.867387 C =11877.568816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.072 3.928 4 H 0.105 0.895 5 C 0.518 3.482 6 O -0.527 6.527 7 N -0.640 5.640 8 C 0.100 3.900 9 C 0.113 3.887 10 N -0.295 5.295 11 C -0.046 4.046 12 C -0.006 4.006 13 C 0.237 3.763 14 N -0.750 5.750 15 C -0.244 4.244 16 H 0.094 0.906 17 C 0.008 3.992 18 N -0.932 5.932 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.280 1.280 23 N -0.251 5.251 24 N -0.089 5.089 25 C 0.098 3.902 26 N -0.512 5.512 27 C 0.008 3.992 28 C -0.002 4.002 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.190 0.810 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.117 19.057 -16.447 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.040 4.040 4 H 0.123 0.877 5 C 0.307 3.693 6 O -0.403 6.403 7 N -0.378 5.378 8 C -0.023 4.023 9 C 0.010 3.990 10 N -0.089 5.089 11 C -0.195 4.195 12 C -0.144 4.144 13 C 0.108 3.892 14 N -0.396 5.396 15 C -0.374 4.374 16 H 0.112 0.888 17 C -0.188 4.188 18 N -0.580 5.580 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.207 1.207 23 N -0.118 5.118 24 N -0.067 5.067 25 C -0.026 4.026 26 N -0.234 5.234 27 C -0.140 4.140 28 C -0.150 4.150 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.164 0.836 37 H 0.207 0.793 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.406 20.164 -16.908 32.113 hybrid contribution 0.919 -0.738 -1.351 1.793 sum -17.487 19.426 -18.259 31.883 Atomic orbital electron populations 1.21655 0.93600 1.01618 1.02983 1.21601 0.97985 0.92652 1.03208 1.22017 0.87619 0.98176 0.96205 0.87697 1.21983 0.91389 0.74948 0.80971 1.90666 1.68188 1.49566 1.31923 1.49965 1.08625 1.72946 1.06283 1.23619 0.85187 1.03400 0.90129 1.23705 0.93135 0.99640 0.82565 1.47145 1.22111 1.15723 1.23966 1.23368 1.05855 0.90789 0.99537 1.22560 0.94185 0.98369 0.99256 1.18936 0.94698 0.82493 0.93055 1.42655 1.50458 1.16952 1.29522 1.19029 1.20644 0.91095 1.06620 0.88839 1.24632 0.99466 0.96249 0.98492 1.69692 1.40005 1.07811 1.40462 0.86561 0.80752 0.76862 0.84375 1.20931 1.21699 1.20684 1.75147 1.21876 1.01660 1.13144 1.78324 1.02108 1.22183 1.04082 1.23680 0.96479 1.03076 0.79347 1.62547 1.56319 1.02991 1.01549 1.22589 0.99267 0.89508 1.02648 1.22778 1.02276 0.98146 0.91777 0.92545 0.92487 0.91475 0.90805 0.91024 0.88133 0.88377 0.83641 0.79259 0.93530 0.93342 0.80517 0.92992 0.87642 0.87587 0.93513 0.90989 0.91682 0.91258 0.91620 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.60 37.16 0.36 -0.37 16 2 C -0.12 -0.70 4.89 -26.73 -0.13 -0.83 16 3 C 0.07 0.48 2.13 -68.86 -0.15 0.33 16 4 H 0.11 0.53 7.98 -51.93 -0.41 0.11 16 5 C 0.52 4.61 6.34 -10.98 -0.07 4.54 16 6 O -0.53 -6.54 12.84 5.56 0.07 -6.47 16 7 N -0.64 -4.65 3.61 -178.52 -0.64 -5.30 16 8 C 0.10 0.81 8.64 -2.97 -0.03 0.79 16 9 C 0.11 0.79 5.15 -70.14 -0.36 0.43 16 10 N -0.29 -3.36 3.54 -56.29 -0.20 -3.56 16 11 C -0.05 -0.56 10.72 -17.05 -0.18 -0.74 16 12 C -0.01 -0.10 6.62 -82.78 -0.55 -0.65 16 13 C 0.24 4.52 6.82 -5.19 -0.04 4.48 16 14 N -0.75 -17.91 5.40 -61.09 -0.33 -18.24 16 15 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 16 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 17 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 19 Si 0.88 22.53 27.74 -169.99 -4.71 17.82 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 23 N -0.25 -4.58 12.41 33.29 0.41 -4.16 16 24 N -0.09 -1.37 13.17 60.35 0.79 -0.57 16 25 C 0.10 0.46 7.89 -2.97 -0.02 0.44 16 26 N -0.51 -3.82 4.51 -244.58 -1.10 -4.92 16 27 C 0.01 0.06 9.16 60.07 0.55 0.61 16 28 C 0.00 -0.02 8.49 60.07 0.51 0.49 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.39 7.31 -51.93 -0.38 0.01 16 32 H 0.07 0.52 6.27 -51.93 -0.33 0.20 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.19 1.63 6.72 -52.49 -0.35 1.28 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.36 8.76 5.52 -40.82 -0.23 8.53 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.11 0.43 6.31 -51.93 -0.33 0.11 16 43 H 0.11 0.23 8.08 -51.93 -0.42 -0.19 16 44 H 0.05 0.44 5.80 -51.93 -0.30 0.13 16 45 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.48 5.93 -51.93 -0.31 0.17 16 48 H 0.06 0.46 8.05 -51.93 -0.42 0.05 16 49 H 0.06 0.66 5.39 -51.93 -0.28 0.38 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -36.23 391.43 -6.97 -43.20 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.57 Total: 2.04 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -0.36 Total: 2.64 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.29 Total: -65.12 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.07 Total: -6.47 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.23 -6.97 -43.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105328848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.495 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds