Wall clock time and date at job start Tue Mar 31 2020 20:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47178 * 2 1 4 4 H 1.08996 * 109.47411 * 57.78792 * 3 2 1 5 5 C 1.50705 * 109.47283 * 177.78503 * 3 2 1 6 6 O 1.21280 * 119.99782 * 97.22543 * 5 3 2 7 7 N 1.34773 * 119.99651 * 277.23307 * 5 3 2 8 8 C 1.47587 * 134.48934 * 179.97438 * 7 5 3 9 9 C 1.53950 * 86.11476 * 155.35392 * 8 7 5 10 10 N 1.46497 * 113.73821 * 137.95302 * 9 8 7 11 11 C 1.35315 * 125.86785 * 275.32251 * 10 9 8 12 12 C 1.35351 * 106.17623 * 180.11811 * 11 10 9 13 13 C 1.50698 * 126.75485 * 179.85360 * 12 11 10 14 14 N 1.46504 * 109.47246 * 94.71425 * 13 12 11 15 15 C 1.36937 * 119.99916 * 179.72774 * 14 13 12 16 16 H 1.07997 * 119.99746 * 0.27259 * 15 14 13 17 17 C 1.38808 * 119.99632 * 180.27467 * 15 14 13 18 18 N 1.31621 * 120.00050 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00201 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46925 * 90.00234 * 19 17 15 21 21 H 1.48499 * 109.47207 * 209.99686 * 19 17 15 22 22 H 1.48496 * 109.47372 * 330.00269 * 19 17 15 23 23 N 1.33775 * 106.49409 * 359.59690 * 12 11 10 24 24 N 1.28635 * 108.88711 * 0.25580 * 23 12 11 25 25 C 1.47582 * 134.49563 * 359.97438 * 7 5 3 26 26 N 1.46901 * 109.47256 * 297.78631 * 3 2 1 27 27 C 1.46901 * 111.00197 * 185.15007 * 26 3 2 28 28 C 1.46904 * 110.99653 * 309.09767 * 26 3 2 29 29 H 1.09001 * 109.47116 * 185.16893 * 1 2 3 30 30 H 1.09006 * 109.46629 * 305.16160 * 1 2 3 31 31 H 1.08998 * 109.47096 * 65.16113 * 1 2 3 32 32 H 1.09003 * 109.46579 * 240.00209 * 2 1 3 33 33 H 1.09000 * 109.46816 * 120.00293 * 2 1 3 34 34 H 1.08997 * 113.76937 * 41.05617 * 8 7 5 35 35 H 1.08992 * 113.76959 * 269.65847 * 8 7 5 36 36 H 1.08997 * 113.74341 * 269.14934 * 9 8 7 37 37 H 1.07993 * 126.91588 * 359.97386 * 11 10 9 38 38 H 1.08998 * 109.47082 * 334.71277 * 13 12 11 39 39 H 1.09000 * 109.47363 * 214.71607 * 13 12 11 40 40 H 0.97001 * 119.99521 * 359.97438 * 14 13 12 41 41 H 0.96995 * 120.00480 * 180.02562 * 18 17 15 42 42 H 1.08996 * 113.76685 * 90.34785 * 25 7 5 43 43 H 1.08996 * 113.76899 * 318.94519 * 25 7 5 44 44 H 1.08994 * 109.47173 * 60.31530 * 27 26 3 45 45 H 1.09000 * 109.47213 * 180.31894 * 27 26 3 46 46 H 1.09000 * 109.46715 * 300.31893 * 27 26 3 47 47 H 1.09005 * 109.47242 * 64.28901 * 28 26 3 48 48 H 1.09005 * 109.47220 * 184.28664 * 28 26 3 49 49 H 1.09001 * 109.47378 * 304.28840 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6447 1.9676 0.8694 5 6 3.5461 1.4428 0.0549 6 8 4.1900 1.5616 -0.9659 7 7 4.1772 1.3110 1.2384 8 6 5.5918 1.2691 1.6572 9 6 5.0912 1.7559 3.0292 10 7 5.7307 1.0834 4.1628 11 6 5.3525 -0.1002 4.6985 12 6 6.2083 -0.3430 5.7187 13 6 6.2038 -1.5401 6.6340 14 7 7.1338 -2.5498 6.1220 15 6 7.3027 -3.7296 6.7964 16 1 6.7470 -3.9176 7.7031 17 6 8.1880 -4.6838 6.3143 18 7 8.3508 -5.8177 6.9627 19 14 9.1486 -4.3589 4.7455 20 1 10.4341 -3.6955 5.0807 21 1 9.4207 -5.6457 4.0562 22 1 8.3546 -3.4771 3.8526 23 7 7.0624 0.6861 5.7510 24 7 6.7525 1.5140 4.8164 25 6 3.7314 1.1505 2.6361 26 7 1.5946 2.1194 -1.2253 27 6 2.1670 3.4690 -1.3190 28 6 1.9242 1.3240 -2.4156 29 1 -0.3633 -1.0235 0.0926 30 1 -0.3633 0.5919 0.8402 31 1 -0.3633 0.4317 -0.9326 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 6.2247 1.9898 1.1395 35 1 6.0151 0.2649 1.6749 36 1 5.0775 2.8410 3.1316 37 1 4.5316 -0.7245 4.3782 38 1 5.1991 -1.9604 6.6776 39 1 6.5134 -1.2345 7.6334 40 1 7.6325 -2.3810 5.3074 41 1 8.9697 -6.4843 6.6261 42 1 3.6085 0.1114 2.9414 43 1 2.8791 1.7765 2.9000 44 1 3.2547 3.4018 -1.3381 45 1 1.8165 3.9497 -2.2323 46 1 1.8544 4.0569 -0.4560 47 1 1.3707 0.3853 -2.3900 48 1 1.6525 1.8817 -3.3119 49 1 2.9939 1.1149 -2.4281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105328848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:24 Heat of formation + Delta-G solvation = 115.013514 kcal Electronic energy + Delta-G solvation = -29341.751605 eV Core-core repulsion = 25342.985165 eV Total energy + Delta-G solvation = -3998.766439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.36910 -41.91477 -40.06672 -37.60861 -36.97884 -34.90185 -34.00456 -33.68745 -31.99365 -30.87471 -28.62298 -28.22393 -28.07473 -27.32015 -25.11765 -24.35002 -24.15027 -22.60144 -22.25887 -21.45335 -20.08180 -19.89228 -18.80607 -18.38472 -17.64326 -17.26257 -16.73628 -16.55059 -16.42796 -16.11437 -15.91619 -15.57173 -15.32737 -15.03567 -14.92211 -14.51506 -14.38601 -14.03735 -13.99631 -13.87527 -13.76154 -13.35626 -13.25512 -13.07761 -12.91880 -12.80569 -12.75357 -12.63755 -12.51132 -12.45438 -12.13449 -11.94837 -11.84474 -11.81599 -11.70879 -11.37261 -11.10108 -11.01502 -10.27658 -10.06633 -9.30994 -9.26306 -8.02258 -5.35111 0.52558 1.01999 1.28138 1.33580 1.39149 1.41240 1.46408 1.78877 2.46895 2.71820 2.84878 3.00253 3.28801 3.36804 3.53308 3.64622 3.78620 3.83492 3.93858 4.00261 4.08529 4.16055 4.19530 4.29241 4.34606 4.44621 4.46378 4.49168 4.55718 4.58235 4.63877 4.65542 4.79354 4.85899 4.88697 4.97810 5.06946 5.11295 5.16178 5.16915 5.23446 5.52110 5.59811 5.76822 5.83720 5.89026 6.21526 6.34884 6.86719 7.06422 7.47308 7.81749 8.00452 9.18898 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.002492 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.803672 B =11231.867387 C =11877.568816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.132 0.868 5 C 0.515 3.485 6 O -0.570 6.570 7 N -0.638 5.638 8 C 0.093 3.907 9 C 0.111 3.889 10 N -0.278 5.278 11 C -0.013 4.013 12 C -0.040 4.040 13 C 0.238 3.762 14 N -0.754 5.754 15 C -0.227 4.227 16 H 0.070 0.930 17 C -0.058 4.058 18 N -0.979 5.979 19 Si 0.948 3.052 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.258 1.258 23 N -0.295 5.295 24 N -0.106 5.106 25 C 0.107 3.893 26 N -0.511 5.511 27 C 0.011 3.989 28 C 0.002 3.998 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.166 0.834 37 H 0.234 0.766 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.362 0.638 41 H 0.258 0.742 42 H 0.121 0.879 43 H 0.145 0.855 44 H 0.023 0.977 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.749 20.577 -17.493 34.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C -0.036 4.036 4 H 0.149 0.851 5 C 0.305 3.695 6 O -0.449 6.449 7 N -0.375 5.375 8 C -0.031 4.031 9 C 0.009 3.991 10 N -0.072 5.072 11 C -0.164 4.164 12 C -0.178 4.178 13 C 0.110 3.890 14 N -0.399 5.399 15 C -0.358 4.358 16 H 0.088 0.912 17 C -0.250 4.250 18 N -0.630 5.630 19 Si 0.776 3.224 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.183 1.183 23 N -0.162 5.162 24 N -0.085 5.085 25 C -0.015 4.015 26 N -0.233 5.233 27 C -0.137 4.137 28 C -0.145 4.145 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.183 0.817 37 H 0.250 0.750 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.194 0.806 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.163 0.837 44 H 0.041 0.959 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.075 21.756 -17.949 35.208 hybrid contribution 1.654 -1.122 -1.016 2.242 sum -19.421 20.634 -18.965 34.097 Atomic orbital electron populations 1.21611 0.92786 1.01973 1.02970 1.21603 0.98532 0.92058 1.03031 1.22174 0.85921 0.98887 0.96638 0.85078 1.22446 0.92234 0.74192 0.80653 1.90664 1.69162 1.51504 1.33603 1.49964 1.08301 1.72109 1.07079 1.23581 0.85933 1.02649 0.90950 1.24121 0.94139 1.00615 0.80196 1.47432 1.20721 1.15302 1.23727 1.23825 1.05022 0.90491 0.97105 1.22260 0.96309 0.98016 1.01195 1.18954 0.94486 0.82613 0.92912 1.42705 1.51392 1.16637 1.29202 1.19057 1.18971 0.92228 1.05516 0.91224 1.25356 1.01272 0.96334 1.02026 1.69847 1.41502 1.09102 1.42579 0.85523 0.79104 0.76799 0.80966 1.21519 1.21839 1.18314 1.75085 1.23505 1.02803 1.14852 1.78236 1.03642 1.22238 1.04364 1.23958 0.96053 1.04598 0.76909 1.62596 1.55964 1.03046 1.01712 1.22578 0.97729 0.89741 1.03691 1.22703 1.00640 0.98738 0.92457 0.92248 0.91329 0.92410 0.92474 0.89791 0.88786 0.89632 0.81703 0.74975 0.90968 0.94800 0.80610 0.93311 0.86156 0.83714 0.95865 0.90601 0.90012 0.90525 0.91252 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.60 71.98 0.69 -0.29 16 2 C -0.11 -1.03 4.89 30.59 0.15 -0.88 16 3 C 0.08 0.79 2.13 44.17 0.09 0.88 16 4 H 0.13 0.67 7.98 -2.39 -0.02 0.65 16 5 C 0.51 8.11 6.34 87.66 0.56 8.66 16 6 O -0.57 -14.01 12.84 -3.03 -0.04 -14.05 16 7 N -0.64 -7.26 3.61 -837.11 -3.02 -10.28 16 8 C 0.09 1.30 8.64 86.48 0.75 2.05 16 9 C 0.11 1.13 5.15 46.75 0.24 1.37 16 10 N -0.28 -5.42 3.54 -332.01 -1.18 -6.60 16 11 C -0.01 -0.27 10.72 83.49 0.89 0.62 16 12 C -0.04 -1.24 6.62 41.60 0.28 -0.96 16 13 C 0.24 8.75 6.82 85.63 0.58 9.33 16 14 N -0.75 -35.19 5.40 -347.18 -1.87 -37.07 16 15 C -0.23 -12.75 10.47 84.03 0.88 -11.87 16 16 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 17 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 18 N -0.98 -62.42 13.97 21.65 0.30 -62.11 16 19 Si 0.95 46.58 27.74 68.60 1.90 48.48 16 20 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.26 -11.57 6.52 99.48 0.65 -10.93 16 23 N -0.30 -10.49 12.41 -48.60 -0.60 -11.09 16 24 N -0.11 -3.10 13.17 37.02 0.49 -2.61 16 25 C 0.11 0.44 7.89 86.48 0.68 1.12 16 26 N -0.51 -6.65 4.51 -927.71 -4.19 -10.83 16 27 C 0.01 0.14 9.16 127.69 1.17 1.31 16 28 C 0.00 0.04 8.49 127.69 1.08 1.12 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.06 0.54 7.31 -2.39 -0.02 0.52 16 32 H 0.06 0.72 6.27 -2.39 -0.01 0.71 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.23 2.58 6.72 -2.91 -0.02 2.56 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.36 16.87 5.52 -92.71 -0.51 16.36 16 41 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.12 0.23 6.31 -2.39 -0.02 0.21 16 43 H 0.15 -0.39 8.08 -2.39 -0.02 -0.41 16 44 H 0.02 0.42 5.80 -2.39 -0.01 0.40 16 45 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 1.00 5.93 -2.38 -0.01 0.99 16 48 H 0.07 0.95 8.05 -2.38 -0.02 0.93 16 49 H 0.04 0.82 5.39 -2.39 -0.01 0.81 16 Total: -1.00 -82.27 391.43 0.71 -81.56 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.40 Total: 15.10 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 8.52 Total: 9.51 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -10.07 Total: -140.60 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.04 Total: -14.05 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.90 Total: 48.48 kcal Total: -82.27 0.71 -81.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105328848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.573 kcal (2) G-P(sol) polarization free energy of solvation -82.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds