Wall clock time and date at job start Tue Mar 31 2020 20:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47110 * 2 1 4 4 N 1.46901 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.46893 * 110.99822 * 66.04594 * 4 3 2 6 6 C 1.46895 * 110.99848 * 190.00217 * 4 3 2 7 7 C 1.50700 * 109.47175 * 170.00467 * 6 4 3 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 4 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.36933 * 120.00208 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00131 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47255 * 60.00182 * 21 19 17 23 23 H 1.48504 * 109.46886 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47055 * 299.99930 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08995 * 109.47110 * 299.99990 * 1 2 3 29 29 H 1.08991 * 109.47039 * 59.99949 * 1 2 3 30 30 H 1.09001 * 109.46538 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47392 * 240.00169 * 2 1 3 32 32 H 1.09003 * 109.47329 * 119.99709 * 2 1 3 33 33 H 1.09003 * 109.46856 * 59.99841 * 3 2 1 34 34 H 1.08991 * 109.47211 * 299.99946 * 3 2 1 35 35 H 1.09004 * 109.47451 * 183.94965 * 5 4 3 36 36 H 1.08994 * 109.47726 * 303.95412 * 5 4 3 37 37 H 1.09005 * 109.46949 * 63.95523 * 5 4 3 38 38 H 1.08999 * 109.47321 * 50.00141 * 6 4 3 39 39 H 1.09004 * 109.47278 * 290.00098 * 6 4 3 40 40 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 41 41 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 42 42 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 43 43 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 44 44 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 45 45 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 46 46 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 47 47 H 0.97001 * 120.00186 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 49 49 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0359 0.8856 -1.2523 6 6 4.0353 2.7932 0.2388 7 6 5.5215 2.7184 0.4767 8 8 6.0866 1.6456 0.4508 9 7 6.2226 3.8437 0.7192 10 6 7.6292 4.1774 0.9893 11 6 7.1344 5.4107 1.7577 12 7 7.9331 6.6182 1.5340 13 6 7.7850 7.4880 0.5081 14 6 8.7198 8.4496 0.6911 15 6 8.9613 9.6509 -0.1861 16 7 8.2384 10.8043 0.3554 17 6 8.3094 12.0161 -0.2783 18 1 8.8981 12.1214 -1.1776 19 6 7.6248 13.1091 0.2352 20 7 6.9079 12.9808 1.3314 21 14 7.7212 14.7620 -0.6298 22 1 7.1975 14.6282 -2.0130 23 1 6.9072 15.7575 0.1129 24 1 9.1348 15.2141 -0.6773 25 7 9.3904 8.1211 1.8010 26 7 8.9000 7.0312 2.2765 27 6 5.9179 5.2783 0.8287 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 5.1233 0.8323 -1.1974 36 1 3.6304 -0.1146 -1.4043 37 1 3.7452 1.5259 -2.0852 38 1 3.5485 3.2237 1.1139 39 1 3.8377 3.4189 -0.6316 40 1 8.1352 3.4469 1.6204 41 1 8.1968 4.4241 0.0920 42 1 6.9163 5.2242 2.8093 43 1 7.0644 7.4282 -0.2941 44 1 10.0284 9.8715 -0.2144 45 1 8.6068 9.4412 -1.1953 46 1 7.7100 10.7098 1.1634 47 1 6.4292 13.7445 1.6900 48 1 6.0299 5.8188 -0.1112 49 1 4.9681 5.4839 1.3224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105366378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:01 Heat of formation + Delta-G solvation = 137.596870 kcal Electronic energy + Delta-G solvation = -28085.550343 eV Core-core repulsion = 24087.763192 eV Total energy + Delta-G solvation = -3997.787151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.17541 -40.94744 -39.09366 -37.43175 -35.03622 -33.68407 -33.56352 -31.89251 -30.41272 -29.97496 -28.14817 -27.45529 -26.78749 -25.85643 -24.40450 -23.19829 -22.84707 -21.25692 -21.14056 -20.74111 -19.45116 -18.06610 -17.59430 -17.14782 -16.62306 -16.35171 -16.07675 -15.82494 -15.49950 -14.88372 -14.73799 -14.57017 -14.41919 -14.15669 -13.79713 -13.56796 -13.35030 -13.23962 -13.11412 -13.05380 -12.66824 -12.54716 -12.35043 -12.20352 -11.98276 -11.87346 -11.71502 -11.55478 -11.28102 -11.04130 -10.93465 -10.81439 -10.57126 -10.22377 -10.14746 -9.95072 -9.75735 -9.37979 -8.94194 -8.88582 -8.84222 -6.94412 -5.76021 -3.05836 1.67245 1.78951 2.07324 2.55968 2.83416 3.34166 3.36516 3.44771 3.49395 3.50441 3.74483 4.10221 4.26992 4.37970 4.53588 4.58948 4.62542 4.65407 4.69018 4.71264 4.78267 4.88184 4.94019 4.99518 5.02586 5.09027 5.13475 5.16682 5.25664 5.27548 5.28747 5.42056 5.56126 5.58908 5.66643 5.72310 5.74046 5.84138 6.14238 6.33447 6.39882 6.52879 6.60121 6.64527 6.73695 7.04816 7.64976 7.68824 8.41142 8.75300 9.53042 10.08214 10.44158 11.46568 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.001860 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.313224 B =15049.663801 C =16343.689283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.527 5.527 5 C 0.014 3.986 6 C 0.042 3.958 7 C 0.552 3.448 8 O -0.511 6.511 9 N -0.648 5.648 10 C 0.102 3.898 11 C 0.112 3.888 12 N -0.292 5.292 13 C -0.047 4.047 14 C 0.000 4.000 15 C 0.232 3.768 16 N -0.725 5.725 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 N -0.250 5.250 26 N -0.089 5.089 27 C 0.095 3.905 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.149 0.851 43 H 0.189 0.811 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.386 0.614 47 H 0.256 0.744 48 H 0.103 0.897 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 -26.625 -3.807 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.251 5.251 5 C -0.133 4.133 6 C -0.089 4.089 7 C 0.342 3.658 8 O -0.384 6.384 9 N -0.386 5.386 10 C -0.022 4.022 11 C 0.008 3.992 12 N -0.087 5.087 13 C -0.196 4.196 14 C -0.137 4.137 15 C 0.103 3.897 16 N -0.370 5.370 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 N -0.117 5.117 26 N -0.067 5.067 27 C -0.029 4.029 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.125 0.875 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.167 0.833 43 H 0.206 0.794 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.121 0.879 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.290 -27.903 -2.333 29.831 hybrid contribution -1.200 1.693 -1.736 2.705 sum -11.490 -26.210 -4.069 28.906 Atomic orbital electron populations 1.21740 0.95408 1.01950 1.01857 1.21540 0.95430 0.95986 1.02974 1.22230 0.86068 0.97930 1.01057 1.61652 1.07583 1.19415 1.36457 1.22632 1.02738 0.99747 0.88223 1.21910 0.91783 0.91992 1.03175 1.20097 0.88728 0.81482 0.75521 1.90719 1.71299 1.26938 1.49457 1.49278 1.10444 1.06189 1.72723 1.23359 0.84975 0.94237 0.99633 1.23369 0.91406 0.81792 1.02639 1.46997 1.24584 1.18906 1.18218 1.23319 1.05510 0.93789 0.97022 1.22492 0.95610 0.99089 0.96538 1.18967 0.96817 0.82097 0.91866 1.42289 1.57904 1.05188 1.31654 1.19183 1.24884 0.86734 1.06452 0.90925 1.24753 1.00168 0.98125 0.97775 1.69664 1.35445 1.30436 1.22469 0.86236 0.77449 0.83751 0.78524 1.21262 1.21738 1.21154 1.75134 1.22524 1.04986 1.09075 1.78317 1.00981 1.09309 1.18104 1.23462 0.98778 0.80966 0.99703 0.92558 0.92817 0.92403 0.91823 0.90939 0.90540 0.94570 0.89525 0.90890 0.95956 0.87491 0.91499 0.88438 0.88637 0.83304 0.79437 0.94239 0.94440 0.78088 0.93450 0.87878 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.68 5.86 -26.73 -0.16 -0.83 16 3 C 0.05 0.32 4.96 -3.82 -0.02 0.30 16 4 N -0.53 -4.13 4.50 -244.38 -1.10 -5.23 16 5 C 0.01 0.11 9.01 60.06 0.54 0.65 16 6 C 0.04 0.28 5.28 -4.98 -0.03 0.26 16 7 C 0.55 5.11 7.80 -10.98 -0.09 5.03 16 8 O -0.51 -6.68 15.09 5.56 0.08 -6.60 16 9 N -0.65 -4.87 3.69 -185.01 -0.68 -5.55 16 10 C 0.10 0.79 8.42 -8.50 -0.07 0.72 16 11 C 0.11 0.88 5.34 -67.69 -0.36 0.52 16 12 N -0.29 -3.64 3.56 -54.46 -0.19 -3.83 16 13 C -0.05 -0.62 10.72 -17.04 -0.18 -0.81 16 14 C 0.00 0.00 6.62 -82.78 -0.55 -0.54 16 15 C 0.23 4.67 6.82 -5.19 -0.04 4.64 16 16 N -0.73 -18.44 5.59 -61.09 -0.34 -18.78 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 N -0.25 -4.86 12.41 33.29 0.41 -4.45 16 26 N -0.09 -1.47 13.16 60.35 0.79 -0.67 16 27 C 0.10 0.53 7.77 -8.43 -0.07 0.47 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.36 6.47 -51.93 -0.34 0.02 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.40 7.93 -51.93 -0.41 -0.02 16 34 H 0.04 0.20 8.12 -51.93 -0.42 -0.22 16 35 H 0.09 0.87 5.88 -51.93 -0.31 0.56 16 36 H 0.07 0.51 6.30 -51.93 -0.33 0.19 16 37 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.11 0.53 7.93 -51.93 -0.41 0.12 16 39 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.19 1.81 6.78 -52.49 -0.36 1.45 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.39 10.57 7.66 -40.82 -0.31 10.26 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.10 0.50 6.38 -51.93 -0.33 0.17 16 49 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -35.97 403.21 -7.97 -43.94 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.83 Total: 2.61 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.89 Total: 2.82 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.39 Total: -65.97 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.08 Total: -6.60 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.97 -7.97 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105366378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.539 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds