Wall clock time and date at job start Tue Mar 31 2020 20:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47110 * 2 1 4 4 N 1.46901 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.46893 * 110.99822 * 66.04594 * 4 3 2 6 6 C 1.46895 * 110.99848 * 190.00217 * 4 3 2 7 7 C 1.50700 * 109.47175 * 170.00467 * 6 4 3 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 4 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.36933 * 120.00208 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00131 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47255 * 60.00182 * 21 19 17 23 23 H 1.48504 * 109.46886 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47055 * 299.99930 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08995 * 109.47110 * 299.99990 * 1 2 3 29 29 H 1.08991 * 109.47039 * 59.99949 * 1 2 3 30 30 H 1.09001 * 109.46538 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47392 * 240.00169 * 2 1 3 32 32 H 1.09003 * 109.47329 * 119.99709 * 2 1 3 33 33 H 1.09003 * 109.46856 * 59.99841 * 3 2 1 34 34 H 1.08991 * 109.47211 * 299.99946 * 3 2 1 35 35 H 1.09004 * 109.47451 * 183.94965 * 5 4 3 36 36 H 1.08994 * 109.47726 * 303.95412 * 5 4 3 37 37 H 1.09005 * 109.46949 * 63.95523 * 5 4 3 38 38 H 1.08999 * 109.47321 * 50.00141 * 6 4 3 39 39 H 1.09004 * 109.47278 * 290.00098 * 6 4 3 40 40 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 41 41 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 42 42 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 43 43 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 44 44 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 45 45 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 46 46 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 47 47 H 0.97001 * 120.00186 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 49 49 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0359 0.8856 -1.2523 6 6 4.0353 2.7932 0.2388 7 6 5.5215 2.7184 0.4767 8 8 6.0866 1.6456 0.4508 9 7 6.2226 3.8437 0.7192 10 6 7.6292 4.1774 0.9893 11 6 7.1344 5.4107 1.7577 12 7 7.9331 6.6182 1.5340 13 6 7.7850 7.4880 0.5081 14 6 8.7198 8.4496 0.6911 15 6 8.9613 9.6509 -0.1861 16 7 8.2384 10.8043 0.3554 17 6 8.3094 12.0161 -0.2783 18 1 8.8981 12.1214 -1.1776 19 6 7.6248 13.1091 0.2352 20 7 6.9079 12.9808 1.3314 21 14 7.7212 14.7620 -0.6298 22 1 7.1975 14.6282 -2.0130 23 1 6.9072 15.7575 0.1129 24 1 9.1348 15.2141 -0.6773 25 7 9.3904 8.1211 1.8010 26 7 8.9000 7.0312 2.2765 27 6 5.9179 5.2783 0.8287 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 5.1233 0.8323 -1.1974 36 1 3.6304 -0.1146 -1.4043 37 1 3.7452 1.5259 -2.0852 38 1 3.5485 3.2237 1.1139 39 1 3.8377 3.4189 -0.6316 40 1 8.1352 3.4469 1.6204 41 1 8.1968 4.4241 0.0920 42 1 6.9163 5.2242 2.8093 43 1 7.0644 7.4282 -0.2941 44 1 10.0284 9.8715 -0.2144 45 1 8.6068 9.4412 -1.1953 46 1 7.7100 10.7098 1.1634 47 1 6.4292 13.7445 1.6900 48 1 6.0299 5.8188 -0.1112 49 1 4.9681 5.4839 1.3224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105366378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:00 Heat of formation + Delta-G solvation = 110.244609 kcal Electronic energy + Delta-G solvation = -28086.736426 eV Core-core repulsion = 24087.763192 eV Total energy + Delta-G solvation = -3998.973234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.31983 -41.62615 -39.73589 -38.04582 -36.77669 -34.81010 -34.10087 -33.57082 -31.61220 -31.13926 -28.76249 -27.93504 -27.77892 -27.10707 -25.25279 -24.71025 -23.81062 -22.35448 -21.81722 -21.64573 -20.06453 -19.37303 -18.73835 -18.20800 -17.47712 -16.93705 -16.87958 -16.57279 -16.45257 -16.21223 -15.86685 -15.50639 -15.16542 -15.10879 -14.96291 -14.84945 -14.28398 -14.10658 -13.99689 -13.82857 -13.68567 -13.37420 -13.02486 -12.97965 -12.83095 -12.71082 -12.67709 -12.55073 -12.41160 -12.33206 -12.10641 -11.96860 -11.87447 -11.77159 -11.46070 -11.05712 -10.91811 -10.91017 -10.21319 -10.00465 -9.34602 -8.98111 -7.90146 -5.19986 0.58010 1.02041 1.41918 1.47559 1.53983 1.56171 1.62159 1.82477 2.62162 2.71372 2.85176 3.14528 3.40252 3.46504 3.56911 3.71587 3.94669 3.96850 4.12094 4.12572 4.19261 4.23091 4.26888 4.28492 4.37554 4.38969 4.46551 4.51302 4.52671 4.55803 4.58032 4.68113 4.68931 4.83632 4.88234 4.89992 5.08318 5.15387 5.21073 5.23875 5.29959 5.42614 5.54508 5.65126 5.89950 6.04525 6.29636 6.44003 6.99491 7.36950 7.52605 8.08727 8.34251 9.33364 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.001860 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.313224 B =15049.663801 C =16343.689283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.057 3.943 4 N -0.548 5.548 5 C 0.020 3.980 6 C 0.046 3.954 7 C 0.549 3.451 8 O -0.558 6.558 9 N -0.644 5.644 10 C 0.100 3.900 11 C 0.103 3.897 12 N -0.274 5.274 13 C -0.015 4.015 14 C -0.036 4.036 15 C 0.234 3.766 16 N -0.738 5.738 17 C -0.244 4.244 18 H 0.084 0.916 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.977 3.023 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.281 1.281 25 N -0.297 5.297 26 N -0.109 5.109 27 C 0.105 3.895 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.162 0.838 43 H 0.232 0.768 44 H 0.026 0.974 45 H 0.066 0.934 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.120 0.880 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -26.815 -5.237 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.070 4.070 4 N -0.272 5.272 5 C -0.128 4.128 6 C -0.085 4.085 7 C 0.340 3.660 8 O -0.435 6.435 9 N -0.381 5.381 10 C -0.024 4.024 11 C 0.001 3.999 12 N -0.069 5.069 13 C -0.166 4.166 14 C -0.174 4.174 15 C 0.107 3.893 16 N -0.381 5.381 17 C -0.376 4.376 18 H 0.102 0.898 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.198 1.198 23 H -0.225 1.225 24 H -0.207 1.207 25 N -0.164 5.164 26 N -0.087 5.087 27 C -0.018 4.018 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.147 0.853 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.179 0.821 43 H 0.249 0.751 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.138 0.862 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.185 -28.118 -3.776 30.877 hybrid contribution -0.572 1.589 -1.292 2.127 sum -12.757 -26.529 -5.068 29.870 Atomic orbital electron populations 1.21710 0.94459 1.02197 1.02235 1.21519 0.96207 0.95957 1.02151 1.22254 0.84845 0.98026 1.01859 1.61614 1.08749 1.20438 1.36413 1.22507 1.01131 1.00297 0.88854 1.21992 0.89754 0.91835 1.04900 1.20648 0.89761 0.80997 0.74595 1.90707 1.72338 1.28781 1.51699 1.49237 1.10178 1.06895 1.71836 1.23347 0.85509 0.93964 0.99593 1.23788 0.92072 0.79912 1.04117 1.47277 1.23347 1.19308 1.16921 1.23772 1.03970 0.91778 0.97081 1.22298 0.98034 1.00048 0.97042 1.18984 0.95428 0.81572 0.93360 1.42488 1.58184 1.06233 1.31190 1.19653 1.23764 0.87716 1.06436 0.89843 1.25594 1.00617 1.01776 0.98783 1.69834 1.36977 1.31037 1.24320 0.85167 0.77291 0.79182 0.77814 1.19759 1.22493 1.20705 1.75063 1.24382 1.06554 1.10371 1.78214 1.02439 1.09011 1.19025 1.23638 0.98808 0.79422 0.99943 0.92192 0.92363 0.92288 0.92243 0.92203 0.89558 0.93767 0.92017 0.90690 0.94990 0.85273 0.89528 0.89089 0.88530 0.82064 0.75126 0.95565 0.91675 0.79719 0.94105 0.86233 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.12 -1.20 5.86 30.60 0.18 -1.02 16 3 C 0.06 0.54 4.96 86.30 0.43 0.97 16 4 N -0.55 -7.68 4.50 -927.07 -4.17 -11.85 16 5 C 0.02 0.30 9.01 127.69 1.15 1.45 16 6 C 0.05 0.48 5.28 85.56 0.45 0.93 16 7 C 0.55 9.19 7.80 87.66 0.68 9.88 16 8 O -0.56 -14.55 15.09 -3.03 -0.05 -14.60 16 9 N -0.64 -7.97 3.69 -857.64 -3.17 -11.14 16 10 C 0.10 1.37 8.42 83.18 0.70 2.07 16 11 C 0.10 1.34 5.34 45.50 0.24 1.59 16 12 N -0.27 -6.24 3.56 -326.21 -1.16 -7.40 16 13 C -0.01 -0.36 10.72 83.49 0.89 0.54 16 14 C -0.04 -1.25 6.62 41.60 0.28 -0.98 16 15 C 0.23 9.28 6.82 85.63 0.58 9.87 16 16 N -0.74 -37.42 5.59 -347.18 -1.94 -39.36 16 17 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 19 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 20 N -0.97 -59.34 13.06 21.65 0.28 -59.05 16 21 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 N -0.30 -11.64 12.41 -48.60 -0.60 -12.24 16 26 N -0.11 -3.54 13.16 37.02 0.49 -3.06 16 27 C 0.11 0.73 7.77 83.23 0.65 1.38 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.63 6.47 -2.39 -0.02 0.61 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.65 7.93 -2.39 -0.02 0.63 16 34 H 0.04 0.36 8.12 -2.39 -0.02 0.34 16 35 H 0.06 1.25 5.88 -2.38 -0.01 1.24 16 36 H 0.07 1.03 6.30 -2.39 -0.02 1.01 16 37 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.13 0.77 7.93 -2.39 -0.02 0.75 16 39 H 0.09 0.59 8.12 -2.39 -0.02 0.58 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.23 3.29 6.78 -2.91 -0.02 3.27 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.37 20.60 7.66 -92.71 -0.71 19.89 16 47 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 48 H 0.12 0.52 6.38 -2.39 -0.02 0.51 16 49 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 Total: -1.00 -80.77 403.21 0.21 -80.55 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.25 Total: 20.82 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 8.26 Total: 9.94 kcal Atomic # 7 Polarization: -133.83 SS G_CDS: -10.27 Total: -144.10 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.05 Total: -14.60 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -80.77 0.21 -80.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105366378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.798 kcal (2) G-P(sol) polarization free energy of solvation -80.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds