Wall clock time and date at job start Tue Mar 31 2020 20:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46619 * 2 1 4 4 N 1.46901 * 109.46985 * 119.99539 * 2 1 3 5 5 C 1.46893 * 110.99822 * 56.04814 * 4 2 1 6 6 C 1.46895 * 110.99848 * 180.02562 * 4 2 1 7 7 C 1.50700 * 109.47175 * 170.00467 * 6 4 2 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 4 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.36933 * 120.00208 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99840 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00204 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46914 * 89.99879 * 21 19 17 23 23 H 1.48499 * 109.47250 * 210.00087 * 21 19 17 24 24 H 1.48500 * 109.47079 * 330.00278 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08998 * 109.47418 * 300.00437 * 1 2 3 29 29 H 1.09000 * 109.46711 * 60.00331 * 1 2 3 30 30 H 1.08996 * 109.46688 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47386 * 240.00110 * 2 1 3 32 32 H 1.08996 * 109.47151 * 59.99966 * 3 2 1 33 33 H 1.09005 * 109.46333 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47308 * 299.99303 * 3 2 1 35 35 H 1.09004 * 109.47451 * 183.94965 * 5 4 2 36 36 H 1.08994 * 109.47726 * 303.95412 * 5 4 2 37 37 H 1.09005 * 109.46949 * 63.95523 * 5 4 2 38 38 H 1.08999 * 109.47321 * 50.00141 * 6 4 2 39 39 H 1.09004 * 109.47278 * 290.00098 * 6 4 2 40 40 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 41 41 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 42 42 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 43 43 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 44 44 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 45 45 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 46 46 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 47 47 H 0.96995 * 120.00211 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 49 49 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4730 -2.0533 1.2817 6 6 3.4881 -0.7115 1.2338 7 6 3.9529 -1.2039 2.5801 8 8 3.1407 -1.5085 3.4277 9 7 5.2710 -1.3048 2.8425 10 6 6.0937 -1.7255 3.9866 11 6 7.1995 -0.7970 3.4655 12 7 8.5505 -1.3539 3.5707 13 6 9.1412 -2.1762 2.6730 14 6 10.3755 -2.4422 3.1606 15 6 11.4283 -3.3124 2.5238 16 7 12.3469 -2.4776 1.7457 17 6 13.3923 -3.0526 1.0737 18 1 13.5393 -4.1216 1.1170 19 6 14.2629 -2.2614 0.3369 20 7 15.2674 -2.8142 -0.3095 21 14 14.0090 -0.4123 0.2625 22 1 14.7545 0.2346 1.3720 23 1 14.5086 0.1041 -1.0370 24 1 12.5619 -0.1058 0.3937 25 7 10.4752 -1.7847 4.3212 26 7 9.3774 -1.1496 4.5356 27 6 6.5195 -1.0442 2.1102 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.7949 -2.5186 2.2134 36 1 0.3843 -2.0099 1.2545 37 1 1.8344 -2.6416 0.4381 38 1 3.8686 0.2957 1.0641 39 1 3.8611 -1.3768 0.4550 40 1 5.6871 -1.4181 4.9500 41 1 6.3653 -2.7808 3.9612 42 1 7.1255 0.2303 3.8223 43 1 8.7145 -2.5444 1.7517 44 1 11.9840 -3.8376 3.3006 45 1 10.9505 -4.0378 1.8654 46 1 12.2149 -1.5173 1.7071 47 1 15.8761 -2.2614 -0.8240 48 1 6.9052 -1.9180 1.5850 49 1 6.4745 -0.1579 1.4772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105377178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:06 Heat of formation + Delta-G solvation = 148.792336 kcal Electronic energy + Delta-G solvation = -28544.997700 eV Core-core repulsion = 24547.696020 eV Total energy + Delta-G solvation = -3997.301680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.31683 -41.03918 -39.32204 -37.71612 -35.25686 -33.71027 -32.65659 -31.97067 -30.55349 -30.40602 -28.97734 -27.15653 -26.68792 -26.11556 -25.08666 -23.88149 -22.48587 -21.33563 -20.87171 -20.52422 -19.54240 -18.28983 -17.79844 -17.45995 -16.89219 -16.40402 -16.18448 -15.79678 -15.32288 -15.05628 -14.68852 -14.56267 -14.40073 -14.15706 -14.01852 -13.40799 -13.36828 -13.33211 -13.06993 -12.92812 -12.77005 -12.73669 -12.45809 -12.34599 -12.15432 -11.90038 -11.86988 -11.57264 -11.53756 -11.18900 -11.16990 -10.90752 -10.68074 -10.28697 -10.20200 -10.04332 -9.61774 -9.44488 -9.10814 -8.92767 -8.85048 -7.26564 -5.78192 -3.14262 1.53403 1.70150 2.02088 2.46660 2.67444 3.25872 3.28974 3.36529 3.42106 3.45588 3.68138 4.02922 4.17405 4.31870 4.42528 4.48797 4.58781 4.59118 4.62248 4.65769 4.69014 4.78787 4.92089 4.95946 5.02129 5.07734 5.08993 5.16030 5.17570 5.28357 5.28729 5.30011 5.41440 5.50341 5.60201 5.62057 5.69025 5.70933 5.79698 6.17679 6.39262 6.49846 6.51053 6.53716 6.62262 6.98949 7.60395 7.95934 8.40292 8.60700 9.18140 9.90588 10.10353 11.39820 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.002105 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.201938 B =13296.593884 C =14291.286205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.150 4.150 4 N -0.521 5.521 5 C 0.013 3.987 6 C 0.038 3.962 7 C 0.553 3.447 8 O -0.510 6.510 9 N -0.648 5.648 10 C 0.102 3.898 11 C 0.111 3.889 12 N -0.292 5.292 13 C -0.046 4.046 14 C -0.006 4.006 15 C 0.237 3.763 16 N -0.749 5.749 17 C -0.244 4.244 18 H 0.093 0.907 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.251 5.251 26 N -0.087 5.087 27 C 0.095 3.905 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.150 0.850 43 H 0.191 0.809 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.363 0.637 47 H 0.260 0.740 48 H 0.103 0.897 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.643 5.916 0.496 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.208 4.208 4 N -0.246 5.246 5 C -0.135 4.135 6 C -0.093 4.093 7 C 0.342 3.658 8 O -0.383 6.383 9 N -0.387 5.387 10 C -0.022 4.022 11 C 0.007 3.993 12 N -0.087 5.087 13 C -0.196 4.196 14 C -0.144 4.144 15 C 0.108 3.892 16 N -0.396 5.396 17 C -0.374 4.374 18 H 0.111 0.889 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.118 5.118 26 N -0.066 5.066 27 C -0.029 4.029 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.167 0.833 43 H 0.207 0.793 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.195 0.805 47 H 0.070 0.930 48 H 0.121 0.879 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -32.163 6.569 2.572 32.928 hybrid contribution 0.055 0.414 -1.956 2.000 sum -32.108 6.983 0.617 32.864 Atomic orbital electron populations 1.21912 0.93765 1.02300 1.02507 1.21684 0.96204 0.95053 0.90266 1.21945 1.00879 0.95209 1.02718 1.61717 1.05069 1.18497 1.39359 1.22649 1.01062 0.87889 1.01882 1.21989 0.90446 1.03260 0.93636 1.20117 0.78731 0.77206 0.89737 1.90721 1.51025 1.48494 1.48038 1.49276 1.03730 1.67514 1.18133 1.23351 0.86474 0.99551 0.92785 1.23408 0.76357 1.00305 0.99263 1.47036 1.12977 1.32848 1.15802 1.23375 0.96031 1.00820 0.99342 1.22553 0.95684 1.02465 0.93701 1.18935 0.86986 0.90227 0.93040 1.42644 1.32247 1.05252 1.59410 1.19034 1.01850 0.94424 1.22076 0.88875 1.24641 0.97284 0.97346 0.99653 1.69696 1.17483 1.34461 1.36347 0.86543 0.77401 0.87330 0.77187 1.20945 1.21741 1.20608 1.75147 1.13024 1.08097 1.15539 1.78331 0.96041 1.20643 1.11543 1.23457 0.81355 1.03632 0.94493 0.91502 0.91949 0.92282 0.93972 0.91438 0.92617 0.91799 0.89526 0.90641 0.96005 0.87142 0.91593 0.88390 0.88588 0.83269 0.79253 0.93344 0.93561 0.80487 0.93010 0.87864 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.84 37.16 0.33 -0.42 16 2 C 0.08 0.43 2.68 -67.71 -0.18 0.25 16 3 C -0.15 -0.73 8.99 37.16 0.33 -0.40 16 4 N -0.52 -3.94 4.37 -236.33 -1.03 -4.97 16 5 C 0.01 0.10 8.84 60.06 0.53 0.63 16 6 C 0.04 0.24 5.09 -4.98 -0.03 0.22 16 7 C 0.55 4.91 7.80 -10.98 -0.09 4.82 16 8 O -0.51 -6.48 15.09 5.56 0.08 -6.40 16 9 N -0.65 -4.54 3.69 -185.01 -0.68 -5.22 16 10 C 0.10 0.73 8.42 -8.50 -0.07 0.66 16 11 C 0.11 0.78 5.34 -67.69 -0.36 0.42 16 12 N -0.29 -3.36 3.56 -54.46 -0.19 -3.55 16 13 C -0.05 -0.56 10.72 -17.04 -0.18 -0.75 16 14 C -0.01 -0.11 6.62 -82.78 -0.55 -0.66 16 15 C 0.24 4.52 6.82 -5.19 -0.04 4.49 16 16 N -0.75 -17.79 5.40 -61.09 -0.33 -18.12 16 17 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 20 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 21 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 22 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 25 N -0.25 -4.58 12.41 33.29 0.41 -4.17 16 26 N -0.09 -1.35 13.16 60.35 0.79 -0.56 16 27 C 0.10 0.47 7.77 -8.43 -0.07 0.40 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.29 6.26 -51.93 -0.33 -0.03 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.24 6.20 -51.93 -0.32 -0.08 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.84 5.88 -51.93 -0.31 0.54 16 36 H 0.07 0.51 6.01 -51.93 -0.31 0.19 16 37 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 38 H 0.11 0.54 5.83 -51.93 -0.30 0.24 16 39 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.19 1.62 6.78 -52.49 -0.36 1.27 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.36 8.67 5.52 -40.82 -0.23 8.44 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.10 0.43 6.38 -51.93 -0.33 0.10 16 49 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -36.55 395.05 -7.12 -43.66 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.57 Total: 1.28 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.62 Total: 2.80 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.26 Total: -64.80 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.08 Total: -6.40 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.55 -7.12 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105377178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.453 kcal (2) G-P(sol) polarization free energy of solvation -36.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds