Wall clock time and date at job start Tue Mar 31 2020 20:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46619 * 2 1 4 4 N 1.46901 * 109.46985 * 119.99539 * 2 1 3 5 5 C 1.46893 * 110.99822 * 56.04814 * 4 2 1 6 6 C 1.46895 * 110.99848 * 180.02562 * 4 2 1 7 7 C 1.50700 * 109.47175 * 170.00467 * 6 4 2 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 4 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.36933 * 120.00208 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99840 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00204 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46914 * 89.99879 * 21 19 17 23 23 H 1.48499 * 109.47250 * 210.00087 * 21 19 17 24 24 H 1.48500 * 109.47079 * 330.00278 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08998 * 109.47418 * 300.00437 * 1 2 3 29 29 H 1.09000 * 109.46711 * 60.00331 * 1 2 3 30 30 H 1.08996 * 109.46688 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47386 * 240.00110 * 2 1 3 32 32 H 1.08996 * 109.47151 * 59.99966 * 3 2 1 33 33 H 1.09005 * 109.46333 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47308 * 299.99303 * 3 2 1 35 35 H 1.09004 * 109.47451 * 183.94965 * 5 4 2 36 36 H 1.08994 * 109.47726 * 303.95412 * 5 4 2 37 37 H 1.09005 * 109.46949 * 63.95523 * 5 4 2 38 38 H 1.08999 * 109.47321 * 50.00141 * 6 4 2 39 39 H 1.09004 * 109.47278 * 290.00098 * 6 4 2 40 40 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 41 41 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 42 42 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 43 43 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 44 44 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 45 45 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 46 46 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 47 47 H 0.96995 * 120.00211 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 49 49 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4730 -2.0533 1.2817 6 6 3.4881 -0.7115 1.2338 7 6 3.9529 -1.2039 2.5801 8 8 3.1407 -1.5085 3.4277 9 7 5.2710 -1.3048 2.8425 10 6 6.0937 -1.7255 3.9866 11 6 7.1995 -0.7970 3.4655 12 7 8.5505 -1.3539 3.5707 13 6 9.1412 -2.1762 2.6730 14 6 10.3755 -2.4422 3.1606 15 6 11.4283 -3.3124 2.5238 16 7 12.3469 -2.4776 1.7457 17 6 13.3923 -3.0526 1.0737 18 1 13.5393 -4.1216 1.1170 19 6 14.2629 -2.2614 0.3369 20 7 15.2674 -2.8142 -0.3095 21 14 14.0090 -0.4123 0.2625 22 1 14.7545 0.2346 1.3720 23 1 14.5086 0.1041 -1.0370 24 1 12.5619 -0.1058 0.3937 25 7 10.4752 -1.7847 4.3212 26 7 9.3774 -1.1496 4.5356 27 6 6.5195 -1.0442 2.1102 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.7949 -2.5186 2.2134 36 1 0.3843 -2.0099 1.2545 37 1 1.8344 -2.6416 0.4381 38 1 3.8686 0.2957 1.0641 39 1 3.8611 -1.3768 0.4550 40 1 5.6871 -1.4181 4.9500 41 1 6.3653 -2.7808 3.9612 42 1 7.1255 0.2303 3.8223 43 1 8.7145 -2.5444 1.7517 44 1 11.9840 -3.8376 3.3006 45 1 10.9505 -4.0378 1.8654 46 1 12.2149 -1.5173 1.7071 47 1 15.8761 -2.2614 -0.8240 48 1 6.9052 -1.9180 1.5850 49 1 6.4745 -0.1579 1.4772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105377178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:05 Heat of formation + Delta-G solvation = 120.353976 kcal Electronic energy + Delta-G solvation = -28546.230880 eV Core-core repulsion = 24547.696020 eV Total energy + Delta-G solvation = -3998.534859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.36733 -41.65619 -39.88733 -38.31973 -36.96838 -34.84239 -33.73265 -33.10754 -31.98233 -31.19229 -29.50880 -28.03109 -27.57186 -26.91217 -25.69145 -24.64348 -24.32694 -22.44156 -21.90894 -20.96373 -20.10577 -19.90330 -18.76983 -18.26285 -17.59208 -17.05330 -16.96985 -16.53819 -16.41611 -16.05643 -15.88897 -15.74830 -15.10996 -15.01389 -14.93853 -14.70458 -14.37879 -14.09527 -13.92592 -13.85478 -13.62083 -13.47065 -13.27758 -13.17598 -12.90692 -12.87896 -12.74805 -12.58919 -12.39967 -12.36333 -12.08569 -11.97557 -11.86119 -11.78608 -11.57951 -11.10120 -10.98657 -10.94075 -10.27020 -10.01317 -9.32572 -9.29290 -7.99746 -5.33295 0.53962 0.99435 1.36885 1.41129 1.43073 1.43943 1.50103 1.80517 2.50474 2.68755 2.82935 3.12945 3.30894 3.40131 3.55300 3.69267 3.83781 3.91781 3.95844 4.04157 4.10615 4.17029 4.21891 4.25064 4.36194 4.38194 4.41280 4.50369 4.51688 4.55392 4.59900 4.66153 4.81644 4.86354 4.91267 4.93688 5.01592 5.10361 5.11587 5.16483 5.30493 5.39920 5.61096 5.78308 5.92480 6.08535 6.23507 6.43289 6.99220 7.08627 7.48253 7.83457 8.03119 9.21291 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.002105 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.201938 B =13296.593884 C =14291.286205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.148 4.148 4 N -0.541 5.541 5 C 0.018 3.982 6 C 0.041 3.959 7 C 0.549 3.451 8 O -0.558 6.558 9 N -0.645 5.645 10 C 0.099 3.901 11 C 0.105 3.895 12 N -0.275 5.275 13 C -0.013 4.013 14 C -0.040 4.040 15 C 0.238 3.762 16 N -0.752 5.752 17 C -0.230 4.230 18 H 0.066 0.934 19 C -0.061 4.061 20 N -0.981 5.981 21 Si 0.952 3.048 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.252 1.252 25 N -0.295 5.295 26 N -0.106 5.106 27 C 0.104 3.896 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.235 0.765 44 H 0.032 0.968 45 H 0.070 0.930 46 H 0.363 0.637 47 H 0.258 0.742 48 H 0.121 0.879 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.809 7.591 -1.123 34.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.205 4.205 4 N -0.266 5.266 5 C -0.130 4.130 6 C -0.089 4.089 7 C 0.340 3.660 8 O -0.435 6.435 9 N -0.382 5.382 10 C -0.025 4.025 11 C 0.003 3.997 12 N -0.069 5.069 13 C -0.164 4.164 14 C -0.178 4.178 15 C 0.111 3.889 16 N -0.398 5.398 17 C -0.361 4.361 18 H 0.084 0.916 19 C -0.252 4.252 20 N -0.631 5.631 21 Si 0.780 3.220 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.177 1.177 25 N -0.162 5.162 26 N -0.084 5.084 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.148 0.852 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.181 0.819 43 H 0.251 0.749 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.196 0.804 47 H 0.067 0.933 48 H 0.138 0.862 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -34.372 8.259 0.985 35.364 hybrid contribution 0.620 -0.203 -1.370 1.517 sum -33.753 8.056 -0.385 34.703 Atomic orbital electron populations 1.21909 0.93731 1.02235 1.02531 1.21747 0.96320 0.95400 0.89746 1.21936 1.01439 0.94502 1.02643 1.61687 1.05979 1.18368 1.40609 1.22527 1.01284 0.88269 1.00872 1.22057 0.89901 1.04592 0.92361 1.20627 0.78734 0.76453 0.90155 1.90708 1.52421 1.50699 1.49637 1.49233 1.03881 1.66684 1.18427 1.23354 0.86598 0.99644 0.92923 1.23797 0.73922 1.00597 1.01430 1.47309 1.13659 1.31521 1.14406 1.23837 0.94213 0.98599 0.99737 1.22250 0.97017 1.04141 0.94436 1.18930 0.86992 0.90495 0.92528 1.42657 1.32021 1.05675 1.59409 1.19041 1.02500 0.93402 1.21115 0.91581 1.25423 0.97397 1.02266 1.00159 1.69864 1.18955 1.36249 1.38061 0.85453 0.78695 0.81261 0.76596 1.21618 1.21803 1.17677 1.75086 1.14778 1.09465 1.16855 1.78245 0.96170 1.21104 1.12910 1.23659 0.79140 1.05776 0.93343 0.92688 0.90682 0.92420 0.93202 0.92661 0.91687 0.90733 0.92017 0.90386 0.95105 0.85202 0.89729 0.89144 0.88563 0.81887 0.74891 0.94997 0.91191 0.80401 0.93321 0.86154 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.84 71.98 0.64 -0.65 16 2 C 0.08 0.69 2.68 44.92 0.12 0.81 16 3 C -0.15 -1.05 8.99 71.98 0.65 -0.40 16 4 N -0.54 -7.22 4.37 -901.62 -3.94 -11.16 16 5 C 0.02 0.26 8.84 127.69 1.13 1.39 16 6 C 0.04 0.41 5.09 85.56 0.44 0.84 16 7 C 0.55 8.66 7.80 87.66 0.68 9.34 16 8 O -0.56 -14.03 15.09 -3.03 -0.05 -14.08 16 9 N -0.64 -7.04 3.69 -857.64 -3.17 -10.21 16 10 C 0.10 1.19 8.42 83.18 0.70 1.89 16 11 C 0.10 1.10 5.34 45.50 0.24 1.34 16 12 N -0.27 -5.42 3.56 -326.21 -1.16 -6.58 16 13 C -0.01 -0.26 10.72 83.49 0.89 0.63 16 14 C -0.04 -1.26 6.62 41.60 0.28 -0.99 16 15 C 0.24 8.80 6.82 85.63 0.58 9.39 16 16 N -0.75 -34.74 5.40 -347.18 -1.87 -36.61 16 17 C -0.23 -12.85 10.47 84.03 0.88 -11.97 16 18 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 19 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 20 N -0.98 -62.06 13.97 21.65 0.30 -61.76 16 21 Si 0.95 45.44 27.74 68.60 1.90 47.35 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 25 N -0.29 -10.50 12.41 -48.60 -0.60 -11.10 16 26 N -0.11 -3.11 13.16 37.02 0.49 -2.62 16 27 C 0.10 0.50 7.77 83.23 0.65 1.15 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.51 6.26 -2.39 -0.01 0.49 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.33 6.20 -2.38 -0.01 0.31 16 34 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.06 1.21 5.88 -2.38 -0.01 1.20 16 36 H 0.08 1.01 6.01 -2.39 -0.01 1.00 16 37 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.13 0.75 5.83 -2.39 -0.01 0.74 16 39 H 0.08 0.54 8.12 -2.39 -0.02 0.52 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.23 2.56 6.78 -2.91 -0.02 2.54 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.36 16.56 5.52 -92.71 -0.51 16.05 16 47 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.12 0.25 6.38 -2.39 -0.02 0.24 16 49 H 0.13 -0.06 8.14 -2.38 -0.02 -0.08 16 Total: -1.00 -82.66 395.05 0.65 -82.01 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.40 Total: 15.05 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 8.34 Total: 9.70 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -9.95 Total: -140.03 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.05 Total: -14.08 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.35 kcal Total: -82.66 0.65 -82.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105377178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.368 kcal (2) G-P(sol) polarization free energy of solvation -82.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds