Wall clock time and date at job start Tue Mar 31 2020 21:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.29304 * 2 1 4 4 C 1.54003 * 110.32182 * 237.86555 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.31216 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21535 * 120.00439 * 180.02562 * 6 5 4 8 8 C 1.48011 * 119.99706 * 0.02562 * 6 5 4 9 9 N 1.34189 * 126.69636 * 359.69088 * 8 6 5 10 10 N 1.28989 * 107.24759 * 179.83269 * 9 8 6 11 11 N 1.28716 * 108.98744 * 0.43431 * 10 9 8 12 12 C 1.46502 * 125.31831 * 179.76180 * 11 10 9 13 13 C 1.53008 * 109.46775 * 239.95314 * 12 11 10 14 14 C 1.52992 * 109.47148 * 359.95088 * 12 11 10 15 15 C 1.52996 * 109.47412 * 119.95615 * 12 11 10 16 16 N 1.28873 * 109.36270 * 359.72140 * 11 10 9 17 17 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 18 18 C 1.54620 * 110.41495 * 122.20144 * 2 1 3 19 19 H 1.09004 * 110.73930 * 22.43376 * 18 2 1 20 20 C 1.53007 * 110.73501 * 259.29970 * 18 2 1 21 21 N 1.46499 * 109.47106 * 174.99432 * 20 18 2 22 22 C 1.36933 * 119.99935 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00290 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99686 * 180.02562 * 22 21 20 25 25 N 1.31626 * 119.99612 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00277 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.46954 * 90.00095 * 26 24 22 28 28 H 1.48503 * 109.46783 * 210.00132 * 26 24 22 29 29 H 1.48499 * 109.46778 * 329.99979 * 26 24 22 30 30 H 1.09001 * 109.47456 * 180.68457 * 1 2 3 31 31 H 1.09006 * 109.46648 * 300.67406 * 1 2 3 32 32 H 1.08996 * 109.47142 * 60.67595 * 1 2 3 33 33 H 1.08999 * 109.91434 * 122.95292 * 4 2 1 34 34 H 1.09002 * 110.07717 * 1.75872 * 4 2 1 35 35 H 1.08998 * 109.46720 * 60.00192 * 13 12 11 36 36 H 1.08997 * 109.46691 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47055 * 299.99824 * 13 12 11 38 38 H 1.09003 * 109.46852 * 60.00558 * 14 12 11 39 39 H 1.09007 * 109.47345 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.47651 * 300.00607 * 14 12 11 41 41 H 1.09006 * 109.47534 * 59.99829 * 15 12 11 42 42 H 1.08999 * 109.47663 * 179.97438 * 15 12 11 43 43 H 1.09003 * 109.47138 * 299.99778 * 15 12 11 44 44 H 1.08997 * 110.66402 * 157.73301 * 17 5 4 45 45 H 1.08998 * 110.66769 * 280.85712 * 17 5 4 46 46 H 1.08994 * 109.46861 * 294.99843 * 20 18 2 47 47 H 1.09006 * 109.46771 * 54.99904 * 20 18 2 48 48 H 0.97002 * 119.99709 * 0.02562 * 21 20 18 49 49 H 0.96996 * 120.00017 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9204 -0.7104 6 6 3.0607 -3.0877 -1.3433 7 8 3.7120 -3.9565 -0.7974 8 6 2.5213 -3.3115 -2.7033 9 7 1.7848 -2.4529 -3.4251 10 7 1.5218 -3.0265 -4.5501 11 7 2.0512 -4.1998 -4.5558 12 6 1.9685 -5.1610 -5.6583 13 6 1.2873 -6.4407 -5.1691 14 6 1.1539 -4.5552 -6.8030 15 6 3.3778 -5.4910 -6.1541 16 7 2.6660 -4.3965 -3.4404 17 6 3.2863 -1.5349 0.6448 18 6 2.0694 -0.7722 1.2262 19 1 1.3209 -1.4693 1.6031 20 6 2.5073 0.1964 2.3267 21 7 2.9002 -0.5620 3.5169 22 6 3.3319 0.0968 4.6369 23 1 3.3824 1.1756 4.6431 24 6 3.7047 -0.6219 5.7645 25 7 4.1192 0.0114 6.8414 26 14 3.6181 -2.4879 5.7537 27 1 4.9118 -3.0406 5.2783 28 1 3.3452 -2.9787 7.1284 29 1 2.5284 -2.9275 4.8457 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5243 0.8840 32 1 -0.3633 0.5033 -0.8959 33 1 2.7165 -0.1222 -1.8112 34 1 1.2352 -1.1172 -1.8377 35 1 0.2832 -6.2056 -4.8160 36 1 1.2253 -7.1557 -5.9895 37 1 1.8676 -6.8723 -4.3536 38 1 1.6393 -3.6435 -7.1515 39 1 1.0928 -5.2702 -7.6235 40 1 0.1499 -4.3201 -6.4498 41 1 3.9581 -5.9226 -5.3386 42 1 3.3163 -6.2065 -6.9741 43 1 3.8631 -4.5793 -6.5026 44 1 3.5072 -2.4193 1.2424 45 1 4.1571 -0.8819 0.5861 46 1 3.3541 0.7862 1.9757 47 1 1.6800 0.8610 2.5761 48 1 2.8552 -1.5310 3.5112 49 1 4.3800 -0.4907 7.6291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106153633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:05 Heat of formation + Delta-G solvation = 112.280588 kcal Electronic energy + Delta-G solvation = -29541.122209 eV Core-core repulsion = 25542.237261 eV Total energy + Delta-G solvation = -3998.884948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.72379 -40.14619 -38.24694 -37.88830 -34.87498 -33.85411 -33.11081 -32.53006 -31.50060 -29.59265 -28.28253 -28.20959 -26.85505 -26.20605 -24.85061 -24.51565 -22.81149 -21.28466 -21.04235 -20.03075 -19.99608 -17.92604 -17.72941 -17.42497 -16.96435 -16.16989 -15.74280 -14.94998 -14.84643 -14.58440 -14.50472 -14.25517 -14.15377 -13.69190 -13.56297 -13.37360 -13.20559 -13.14119 -13.02424 -12.72041 -12.53113 -12.50361 -12.42973 -12.23864 -12.14492 -12.00199 -11.76725 -11.47501 -11.42256 -11.29928 -11.15799 -10.89906 -10.66770 -10.59903 -10.51565 -10.33776 -10.28326 -10.07229 -9.55316 -8.87406 -8.75795 -7.20680 -5.73636 -3.09361 0.74413 1.22712 1.30984 2.51818 2.95588 3.43053 3.46819 3.50857 3.53794 3.68374 3.85409 3.96250 4.22809 4.57391 4.63392 4.64643 4.75050 4.78350 4.78833 4.88128 4.93249 4.94669 4.98669 5.00020 5.19142 5.29926 5.36236 5.43416 5.43976 5.49856 5.53286 5.57379 5.62780 5.71529 5.77022 5.78041 5.83506 5.96525 6.03674 6.09321 6.16668 6.20853 6.41590 6.64813 6.75541 7.30871 7.75231 8.00397 8.01839 8.45231 9.24053 9.96675 10.15824 11.44629 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002479 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.927578 B =11293.075442 C =12201.892334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.091 0.909 4 C 0.100 3.900 5 N -0.599 5.599 6 C 0.629 3.371 7 O -0.510 6.510 8 C 0.135 3.865 9 N -0.254 5.254 10 N -0.058 5.058 11 N -0.125 5.125 12 C 0.176 3.824 13 C -0.161 4.161 14 C -0.153 4.153 15 C -0.161 4.161 16 N -0.246 5.246 17 C 0.115 3.885 18 C -0.108 4.108 19 H 0.085 0.915 20 C 0.170 3.830 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.091 0.909 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.032 0.968 47 H 0.033 0.967 48 H 0.361 0.639 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.977 -9.298 -32.613 34.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.110 0.890 4 C -0.023 4.023 5 N -0.333 5.333 6 C 0.411 3.589 7 O -0.382 6.382 8 C -0.149 4.149 9 N -0.129 5.129 10 N -0.051 5.051 11 N -0.040 5.040 12 C 0.096 3.904 13 C -0.219 4.219 14 C -0.211 4.211 15 C -0.219 4.219 16 N -0.099 5.099 17 C -0.006 4.006 18 C -0.127 4.127 19 H 0.103 0.897 20 C 0.042 3.958 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.194 0.806 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.838 -9.568 -32.752 35.010 hybrid contribution 0.215 -1.412 0.510 1.517 sum -7.622 -10.980 -32.242 34.903 Atomic orbital electron populations 1.21827 0.94021 1.01909 1.02075 1.22097 0.96535 0.99860 0.93352 0.89031 1.22517 0.96411 0.86713 0.96635 1.48482 1.52528 1.13790 1.18473 1.15613 0.80487 0.81774 0.81003 1.90877 1.39474 1.42679 1.65187 1.25240 1.01909 0.88562 0.99218 1.76199 1.13692 1.24714 0.98258 1.78880 1.16082 0.94122 1.15978 1.50751 1.29751 1.11652 1.11817 1.21537 0.99714 0.86849 0.82320 1.22269 1.01374 0.94636 1.03652 1.22109 1.00667 1.02458 0.95859 1.22267 0.92967 1.03524 1.03162 1.75004 1.15949 1.24171 0.94734 1.22741 0.97435 1.00210 0.80192 1.22668 0.96833 0.98084 0.95141 0.89713 1.20613 0.97336 0.92536 0.85309 1.42740 1.80930 1.04535 1.12055 1.19036 1.35773 0.93152 0.89390 0.89164 1.24670 1.01199 0.97282 0.95952 1.69704 1.50572 1.34330 1.03602 0.86580 0.78044 0.87321 0.76803 1.20921 1.21756 1.20298 0.92817 0.91795 0.92452 0.91060 0.88729 0.91246 0.88885 0.90162 0.90466 0.89030 0.90455 0.90170 0.88891 0.91251 0.89332 0.89610 0.95047 0.94873 0.80626 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.90 37.16 0.33 -1.15 16 2 C -0.10 -1.15 3.17 -89.24 -0.28 -1.43 16 3 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 4 C 0.10 1.18 5.95 -2.98 -0.02 1.16 16 5 N -0.60 -8.72 3.29 -170.81 -0.56 -9.28 16 6 C 0.63 10.20 7.91 -12.25 -0.10 10.10 16 7 O -0.51 -9.87 17.30 5.34 0.09 -9.78 16 8 C 0.13 1.94 7.98 -156.24 -1.25 0.69 16 9 N -0.25 -3.30 9.78 32.10 0.31 -2.98 16 10 N -0.06 -0.66 12.21 60.35 0.74 0.08 16 11 N -0.12 -1.28 3.72 0.52 0.00 -1.27 16 12 C 0.18 1.02 1.30 -131.82 -0.17 0.85 16 13 C -0.16 -0.75 8.66 37.16 0.32 -0.43 16 14 C -0.15 -0.56 7.90 37.15 0.29 -0.27 16 15 C -0.16 -0.74 8.66 37.16 0.32 -0.42 16 16 N -0.25 -3.25 11.85 32.11 0.38 -2.86 16 17 C 0.12 1.79 6.46 -2.13 -0.01 1.77 16 18 C -0.11 -1.60 2.62 -88.74 -0.23 -1.84 16 19 H 0.08 1.34 7.86 -51.93 -0.41 0.93 16 20 C 0.17 3.11 5.58 -4.04 -0.02 3.09 16 21 N -0.76 -17.83 5.33 -59.91 -0.32 -18.15 16 22 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 23 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -29.63 13.97 55.49 0.78 -28.85 16 26 Si 0.88 22.66 27.74 -169.99 -4.71 17.95 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.10 5.70 -51.93 -0.30 0.81 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 1.54 7.85 -51.93 -0.41 1.13 16 45 H 0.09 1.29 7.95 -51.93 -0.41 0.88 16 46 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.36 8.45 5.53 -40.82 -0.23 8.23 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -35.44 398.08 -6.45 -41.89 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.08 Total: 2.16 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.07 Total: 5.12 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: 1.33 Total: -63.33 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.44 -6.45 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106153633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.172 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds