Wall clock time and date at job start Tue Mar 31 2020 21:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.29304 * 2 1 4 4 C 1.54003 * 110.32182 * 237.86555 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.31216 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21535 * 120.00439 * 180.02562 * 6 5 4 8 8 C 1.48011 * 119.99706 * 0.02562 * 6 5 4 9 9 N 1.34189 * 126.69636 * 359.69088 * 8 6 5 10 10 N 1.28989 * 107.24759 * 179.83269 * 9 8 6 11 11 N 1.28716 * 108.98744 * 0.43431 * 10 9 8 12 12 C 1.46502 * 125.31831 * 179.76180 * 11 10 9 13 13 C 1.53008 * 109.46775 * 239.95314 * 12 11 10 14 14 C 1.52992 * 109.47148 * 359.95088 * 12 11 10 15 15 C 1.52996 * 109.47412 * 119.95615 * 12 11 10 16 16 N 1.28873 * 109.36270 * 359.72140 * 11 10 9 17 17 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 18 18 C 1.54620 * 110.41495 * 122.20144 * 2 1 3 19 19 H 1.09004 * 110.73930 * 22.43376 * 18 2 1 20 20 C 1.53007 * 110.73501 * 259.29970 * 18 2 1 21 21 N 1.46499 * 109.47106 * 174.99432 * 20 18 2 22 22 C 1.36933 * 119.99935 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00290 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99686 * 180.02562 * 22 21 20 25 25 N 1.31626 * 119.99612 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00277 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.46954 * 90.00095 * 26 24 22 28 28 H 1.48503 * 109.46783 * 210.00132 * 26 24 22 29 29 H 1.48499 * 109.46778 * 329.99979 * 26 24 22 30 30 H 1.09001 * 109.47456 * 180.68457 * 1 2 3 31 31 H 1.09006 * 109.46648 * 300.67406 * 1 2 3 32 32 H 1.08996 * 109.47142 * 60.67595 * 1 2 3 33 33 H 1.08999 * 109.91434 * 122.95292 * 4 2 1 34 34 H 1.09002 * 110.07717 * 1.75872 * 4 2 1 35 35 H 1.08998 * 109.46720 * 60.00192 * 13 12 11 36 36 H 1.08997 * 109.46691 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47055 * 299.99824 * 13 12 11 38 38 H 1.09003 * 109.46852 * 60.00558 * 14 12 11 39 39 H 1.09007 * 109.47345 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.47651 * 300.00607 * 14 12 11 41 41 H 1.09006 * 109.47534 * 59.99829 * 15 12 11 42 42 H 1.08999 * 109.47663 * 179.97438 * 15 12 11 43 43 H 1.09003 * 109.47138 * 299.99778 * 15 12 11 44 44 H 1.08997 * 110.66402 * 157.73301 * 17 5 4 45 45 H 1.08998 * 110.66769 * 280.85712 * 17 5 4 46 46 H 1.08994 * 109.46861 * 294.99843 * 20 18 2 47 47 H 1.09006 * 109.46771 * 54.99904 * 20 18 2 48 48 H 0.97002 * 119.99709 * 0.02562 * 21 20 18 49 49 H 0.96996 * 120.00017 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9204 -0.7104 6 6 3.0607 -3.0877 -1.3433 7 8 3.7120 -3.9565 -0.7974 8 6 2.5213 -3.3115 -2.7033 9 7 1.7848 -2.4529 -3.4251 10 7 1.5218 -3.0265 -4.5501 11 7 2.0512 -4.1998 -4.5558 12 6 1.9685 -5.1610 -5.6583 13 6 1.2873 -6.4407 -5.1691 14 6 1.1539 -4.5552 -6.8030 15 6 3.3778 -5.4910 -6.1541 16 7 2.6660 -4.3965 -3.4404 17 6 3.2863 -1.5349 0.6448 18 6 2.0694 -0.7722 1.2262 19 1 1.3209 -1.4693 1.6031 20 6 2.5073 0.1964 2.3267 21 7 2.9002 -0.5620 3.5169 22 6 3.3319 0.0968 4.6369 23 1 3.3824 1.1756 4.6431 24 6 3.7047 -0.6219 5.7645 25 7 4.1192 0.0114 6.8414 26 14 3.6181 -2.4879 5.7537 27 1 4.9118 -3.0406 5.2783 28 1 3.3452 -2.9787 7.1284 29 1 2.5284 -2.9275 4.8457 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5243 0.8840 32 1 -0.3633 0.5033 -0.8959 33 1 2.7165 -0.1222 -1.8112 34 1 1.2352 -1.1172 -1.8377 35 1 0.2832 -6.2056 -4.8160 36 1 1.2253 -7.1557 -5.9895 37 1 1.8676 -6.8723 -4.3536 38 1 1.6393 -3.6435 -7.1515 39 1 1.0928 -5.2702 -7.6235 40 1 0.1499 -4.3201 -6.4498 41 1 3.9581 -5.9226 -5.3386 42 1 3.3163 -6.2065 -6.9741 43 1 3.8631 -4.5793 -6.5026 44 1 3.5072 -2.4193 1.2424 45 1 4.1571 -0.8819 0.5861 46 1 3.3541 0.7862 1.9757 47 1 1.6800 0.8610 2.5761 48 1 2.8552 -1.5310 3.5112 49 1 4.3800 -0.4907 7.6291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106153633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:04 Heat of formation + Delta-G solvation = 87.626130 kcal Electronic energy + Delta-G solvation = -29542.191307 eV Core-core repulsion = 25542.237261 eV Total energy + Delta-G solvation = -3999.954045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.64328 -41.33776 -39.31108 -38.62919 -36.64248 -34.79439 -34.38665 -33.52903 -33.27097 -31.07106 -28.72997 -28.56171 -28.03033 -27.32309 -25.87480 -25.63233 -24.43122 -22.65558 -21.92375 -21.21848 -21.03554 -19.67281 -18.67744 -18.56806 -17.75722 -17.45202 -16.93106 -16.54555 -15.98164 -15.57980 -15.35134 -15.25130 -15.20820 -15.05318 -14.75849 -14.57250 -14.25610 -14.04730 -13.80478 -13.61856 -13.51082 -13.38610 -13.27586 -13.22127 -13.00519 -12.86602 -12.82440 -12.65967 -12.54439 -12.33274 -12.14954 -12.14019 -12.09916 -11.85016 -11.79044 -11.68083 -11.52958 -11.51071 -11.43877 -10.97221 -9.94424 -9.27744 -8.02088 -5.34274 -0.22254 0.20860 0.57930 1.37651 1.40007 1.44965 1.45807 1.77311 2.47734 2.60524 2.87085 3.29870 3.36713 3.46284 3.52301 3.53268 3.61432 3.75030 3.84583 4.00311 4.20008 4.26876 4.33432 4.38746 4.47634 4.50316 4.51218 4.56382 4.58329 4.70461 4.71660 4.71792 4.79689 4.82888 4.84868 5.00067 5.01634 5.07622 5.08812 5.15303 5.18870 5.21527 5.24487 5.34723 5.52352 5.78130 6.14206 6.22449 6.58863 7.00330 7.08922 7.85979 8.02687 9.19363 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002479 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.927578 B =11293.075442 C =12201.892334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.109 0.891 4 C 0.102 3.898 5 N -0.595 5.595 6 C 0.627 3.373 7 O -0.553 6.553 8 C 0.118 3.882 9 N -0.257 5.257 10 N -0.056 5.056 11 N -0.108 5.108 12 C 0.159 3.841 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.158 4.158 16 N -0.260 5.260 17 C 0.114 3.886 18 C -0.097 4.097 19 H 0.078 0.922 20 C 0.168 3.832 21 N -0.761 5.761 22 C -0.227 4.227 23 H 0.064 0.936 24 C -0.062 4.062 25 N -0.982 5.982 26 Si 0.946 3.054 27 H -0.282 1.282 28 H -0.295 1.295 29 H -0.256 1.256 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.129 0.871 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.039 0.961 48 H 0.363 0.637 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 -10.177 -36.173 38.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.127 0.873 4 C -0.020 4.020 5 N -0.327 5.327 6 C 0.410 3.590 7 O -0.429 6.429 8 C -0.165 4.165 9 N -0.132 5.132 10 N -0.048 5.048 11 N -0.025 5.025 12 C 0.081 3.919 13 C -0.217 4.217 14 C -0.207 4.207 15 C -0.216 4.216 16 N -0.114 5.114 17 C -0.008 4.008 18 C -0.117 4.117 19 H 0.096 0.904 20 C 0.042 3.958 21 N -0.407 5.407 22 C -0.358 4.358 23 H 0.082 0.918 24 C -0.254 4.254 25 N -0.633 5.633 26 Si 0.774 3.226 27 H -0.209 1.209 28 H -0.222 1.222 29 H -0.181 1.181 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.196 0.804 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.333 -10.414 -36.386 38.981 hybrid contribution 0.640 -1.093 1.451 1.926 sum -8.693 -11.508 -34.935 37.795 Atomic orbital electron populations 1.21816 0.92830 1.01808 1.03099 1.22099 0.97437 1.00096 0.91166 0.87305 1.22687 0.96636 0.85852 0.96786 1.48511 1.52146 1.14050 1.17992 1.15843 0.80004 0.81583 0.81587 1.90840 1.41513 1.44081 1.66427 1.24873 1.03227 0.89498 0.98890 1.76148 1.13655 1.24846 0.98519 1.78808 1.16041 0.94584 1.15330 1.51316 1.27864 1.11694 1.11615 1.22229 1.01142 0.86730 0.81794 1.22315 1.00313 0.94609 1.04420 1.22179 0.99611 1.03151 0.95751 1.22313 0.91681 1.04048 1.03588 1.74970 1.16565 1.24146 0.95698 1.22670 0.97998 0.99422 0.80688 1.22490 0.96385 0.97512 0.95284 0.90394 1.20785 0.97558 0.93019 0.84434 1.42808 1.80706 1.04849 1.12314 1.19053 1.33846 0.92234 0.90649 0.91823 1.25416 1.02119 1.01966 0.95855 1.69864 1.52847 1.36128 1.04470 0.85537 0.78539 0.81693 0.76809 1.20856 1.22159 1.18100 0.93477 0.92014 0.90238 0.89377 0.88165 0.91899 0.85225 0.92058 0.90988 0.85488 0.91036 0.92046 0.85241 0.91821 0.91597 0.89124 0.94415 0.94302 0.80441 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.90 71.98 0.64 -1.90 16 2 C -0.09 -1.84 3.17 -9.90 -0.03 -1.87 16 3 H 0.11 1.96 7.85 -2.39 -0.02 1.94 16 4 C 0.10 2.20 5.95 86.53 0.52 2.71 16 5 N -0.60 -16.92 3.29 -812.61 -2.67 -19.59 16 6 C 0.63 20.47 7.91 86.83 0.69 21.15 16 7 O -0.55 -22.04 17.30 -3.82 -0.07 -22.11 16 8 C 0.12 3.37 7.98 137.15 1.09 4.47 16 9 N -0.26 -6.39 9.78 -52.36 -0.51 -6.90 16 10 N -0.06 -1.19 12.21 37.02 0.45 -0.74 16 11 N -0.11 -2.09 3.72 -152.26 -0.57 -2.66 16 12 C 0.16 1.52 1.30 3.60 0.00 1.52 16 13 C -0.16 -1.15 8.66 71.98 0.62 -0.53 16 14 C -0.15 -0.66 7.90 71.98 0.57 -0.09 16 15 C -0.16 -1.12 8.66 71.98 0.62 -0.49 16 16 N -0.26 -6.81 11.85 -52.31 -0.62 -7.43 16 17 C 0.11 3.48 6.46 86.73 0.56 4.04 16 18 C -0.10 -2.76 2.62 -9.58 -0.03 -2.78 16 19 H 0.08 2.36 7.86 -2.38 -0.02 2.34 16 20 C 0.17 5.97 5.58 86.38 0.48 6.45 16 21 N -0.76 -35.43 5.33 -343.44 -1.83 -37.26 16 22 C -0.23 -12.95 10.47 84.04 0.88 -12.07 16 23 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 24 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 25 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 26 Si 0.95 47.29 27.74 68.60 1.90 49.19 16 27 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 29 H -0.26 -11.77 6.52 99.48 0.65 -11.12 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 2.11 5.70 -2.39 -0.01 2.10 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.13 -0.32 8.14 -2.38 -0.02 -0.34 16 40 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.13 -0.05 8.14 -2.39 -0.02 -0.06 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.07 2.32 7.85 -2.39 -0.02 2.30 16 45 H 0.09 2.67 7.95 -2.39 -0.02 2.65 16 46 H 0.04 1.32 8.00 -2.39 -0.02 1.30 16 47 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.36 16.64 5.53 -92.71 -0.51 16.13 16 49 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -79.18 398.08 3.85 -75.32 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.38 Total: 18.28 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 7.09 Total: 17.35 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -5.45 Total: -138.04 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.07 Total: -22.11 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.90 Total: 49.19 kcal Total: -79.18 3.85 -75.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106153633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.947 kcal (2) G-P(sol) polarization free energy of solvation -79.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds