Wall clock time and date at job start Tue Mar 31 2020 20:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47466 * 2 1 4 4 H 1.09007 * 109.46976 * 303.36674 * 3 2 1 5 5 C 1.50691 * 109.47457 * 183.35856 * 3 2 1 6 6 O 1.21286 * 119.99958 * 263.88085 * 5 3 2 7 7 N 1.34775 * 119.99736 * 83.87766 * 5 3 2 8 8 C 1.46508 * 119.99817 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.46962 * 180.02562 * 8 7 5 10 10 C 1.35351 * 126.75382 * 94.71625 * 9 8 7 11 11 N 1.35314 * 106.17449 * 179.84916 * 10 9 8 12 12 C 1.46497 * 125.86569 * 180.18034 * 11 10 9 13 13 C 1.53949 * 113.74170 * 14.04348 * 12 11 10 14 14 N 1.47815 * 86.03264 * 222.08014 * 13 12 11 15 15 C 1.36932 * 134.45343 * 204.64253 * 14 13 12 16 16 H 1.08004 * 120.00004 * 184.29426 * 15 14 13 17 17 C 1.38817 * 120.00411 * 4.29796 * 15 14 13 18 18 N 1.31619 * 119.99742 * 5.74789 * 17 15 14 19 19 Si 1.86794 * 120.00180 * 185.74929 * 17 15 14 20 20 H 1.48506 * 109.47230 * 94.98406 * 19 17 15 21 21 H 1.48501 * 109.47157 * 214.97955 * 19 17 15 22 22 H 1.48500 * 109.47386 * 334.97988 * 19 17 15 23 23 C 1.47573 * 91.05388 * 24.54883 * 14 13 12 24 24 N 1.28719 * 108.26349 * 0.41607 * 11 10 9 25 25 N 1.28632 * 110.17550 * 359.73367 * 24 11 10 26 26 N 1.46898 * 109.46777 * 63.35492 * 3 2 1 27 27 C 1.46902 * 111.00607 * 278.12110 * 26 3 2 28 28 C 1.46908 * 110.99766 * 42.07939 * 26 3 2 29 29 H 1.09004 * 109.47427 * 40.76118 * 1 2 3 30 30 H 1.08997 * 109.46760 * 280.76208 * 1 2 3 31 31 H 1.08999 * 109.47588 * 160.76456 * 1 2 3 32 32 H 1.08996 * 109.46899 * 120.00476 * 2 1 3 33 33 H 1.09002 * 109.46647 * 240.00338 * 2 1 3 34 34 H 0.96997 * 120.00594 * 359.97438 * 7 5 3 35 35 H 1.08995 * 109.47224 * 299.99980 * 8 7 5 36 36 H 1.09001 * 109.46715 * 60.00225 * 8 7 5 37 37 H 1.08001 * 126.90665 * 359.97438 * 10 9 8 38 38 H 1.09002 * 112.93965 * 145.62469 * 12 11 10 39 39 H 1.08998 * 113.76482 * 336.34144 * 13 12 11 40 40 H 1.08994 * 113.77358 * 107.74328 * 13 12 11 41 41 H 0.96998 * 119.99869 * 180.02562 * 18 17 15 42 42 H 1.09004 * 113.77282 * 221.15838 * 23 14 13 43 43 H 1.08997 * 113.87367 * 89.76234 * 23 14 13 44 44 H 1.09001 * 109.46715 * 70.92877 * 27 26 3 45 45 H 1.08995 * 109.46935 * 190.92552 * 27 26 3 46 46 H 1.08993 * 109.46770 * 310.92805 * 27 26 3 47 47 H 1.08995 * 109.47196 * 52.59707 * 28 26 3 48 48 H 1.09003 * 109.46741 * 172.59995 * 28 26 3 49 49 H 1.08999 * 109.46631 * 292.58785 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6283 1.9734 -0.8583 5 6 3.5447 1.4433 -0.0832 6 8 4.2079 1.5351 0.9281 7 7 4.1533 1.3418 -1.2814 8 6 5.6162 1.3421 -1.3623 9 6 6.0396 1.2192 -2.8034 10 6 6.3474 2.2324 -3.6463 11 7 6.6713 1.6556 -4.8267 12 6 7.0791 2.3617 -6.0438 13 6 7.4496 3.8374 -5.8096 14 7 6.7029 4.1158 -7.0545 15 6 6.7433 5.1103 -7.9950 16 1 6.0248 5.1205 -8.8013 17 6 7.7076 6.1054 -7.9120 18 7 8.6517 6.0323 -6.9979 19 14 7.6653 7.5482 -9.0977 20 1 6.9460 8.6850 -8.4687 21 1 9.0538 7.9611 -9.4247 22 1 6.9625 7.1456 -10.3424 23 6 5.8987 2.8911 -6.8783 24 7 6.5549 0.3802 -4.6978 25 7 6.1797 0.0875 -3.5027 26 7 1.6177 2.1111 1.2379 27 6 0.2341 2.5928 1.1305 28 6 1.7775 1.2227 2.3970 29 1 -0.3634 0.7784 -0.6710 30 1 -0.3633 0.1919 1.0096 31 1 -0.3634 -0.9703 -0.3386 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.6230 1.2679 -2.0902 35 1 6.0028 2.2734 -0.9486 36 1 6.0115 0.5001 -0.7940 37 1 6.3383 3.2887 -3.4213 38 1 7.8171 1.8112 -6.6273 39 1 6.9939 4.2686 -4.9183 40 1 8.5183 4.0390 -5.8825 41 1 9.3253 6.7278 -6.9396 42 1 5.7315 2.3384 -7.8028 43 1 4.9860 3.0419 -6.3019 44 1 -0.4482 1.7428 1.1394 45 1 0.0107 3.2468 1.9733 46 1 0.1133 3.1460 0.1992 47 1 2.7949 0.8322 2.4180 48 1 1.5837 1.7816 3.3125 49 1 1.0721 0.3953 2.3204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107181776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:38 Heat of formation + Delta-G solvation = 140.437703 kcal Electronic energy + Delta-G solvation = -28940.712744 eV Core-core repulsion = 24943.048780 eV Total energy + Delta-G solvation = -3997.663964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.08559 -40.39848 -38.40691 -37.87948 -35.18049 -33.44744 -32.64952 -31.98337 -31.27068 -29.02098 -28.00604 -27.89252 -26.39999 -25.27186 -24.40155 -23.18816 -22.08869 -21.90193 -21.04817 -20.10646 -19.63263 -17.72110 -17.26643 -16.94327 -16.63885 -16.16306 -15.72238 -15.38353 -15.15957 -15.04415 -14.79414 -14.59942 -14.08675 -14.07022 -13.45598 -13.22368 -13.14557 -12.93962 -12.81573 -12.52139 -12.28862 -12.16781 -12.13484 -11.94635 -11.88560 -11.87659 -11.60871 -11.40041 -11.20678 -11.16487 -10.99593 -10.96130 -10.53935 -10.24664 -9.93991 -9.88180 -9.56258 -9.15174 -9.12970 -9.07613 -8.45656 -7.27075 -6.06342 -3.43206 1.79956 2.39754 2.54265 2.62873 3.20421 3.24789 3.30386 3.32424 3.83732 4.19738 4.34105 4.43266 4.48936 4.58944 4.70369 4.71703 4.88126 4.90879 4.99120 4.99908 5.09972 5.13676 5.18162 5.20447 5.35625 5.37787 5.39261 5.51697 5.52454 5.57244 5.60715 5.67866 5.74683 5.78689 5.90863 6.02718 6.07426 6.14801 6.27980 6.30604 6.49888 6.64541 6.76367 6.80793 7.01125 7.15785 7.41521 7.66294 8.15595 8.71779 8.73100 9.39614 10.16834 11.09544 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.002175 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.109549 B =12872.930858 C =13651.472132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.152 4.152 3 C 0.067 3.933 4 H 0.101 0.899 5 C 0.524 3.476 6 O -0.527 6.527 7 N -0.724 5.724 8 C 0.217 3.783 9 C -0.062 4.062 10 C -0.015 4.015 11 N -0.265 5.265 12 C 0.079 3.921 13 C 0.156 3.844 14 N -0.598 5.598 15 C -0.233 4.233 16 H 0.087 0.913 17 C -0.001 4.001 18 N -0.917 5.917 19 Si 0.920 3.080 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.120 3.880 24 N -0.089 5.089 25 N -0.268 5.268 26 N -0.522 5.522 27 C 0.008 3.992 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.190 0.810 38 H 0.132 0.868 39 H 0.039 0.961 40 H 0.099 0.901 41 H 0.259 0.741 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.065 0.935 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -9.630 13.717 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C -0.046 4.046 4 H 0.119 0.881 5 C 0.309 3.691 6 O -0.402 6.402 7 N -0.377 5.377 8 C 0.092 3.908 9 C -0.201 4.201 10 C -0.169 4.169 11 N -0.057 5.057 12 C -0.023 4.023 13 C 0.029 3.971 14 N -0.324 5.324 15 C -0.359 4.359 16 H 0.105 0.895 17 C -0.199 4.199 18 N -0.562 5.562 19 Si 0.749 3.251 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.007 4.007 24 N -0.068 5.068 25 N -0.135 5.135 26 N -0.245 5.245 27 C -0.140 4.140 28 C -0.130 4.130 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.235 0.765 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.207 0.793 38 H 0.150 0.850 39 H 0.057 0.943 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.174 -10.206 13.608 21.515 hybrid contribution -0.787 1.302 -0.804 1.720 sum -13.961 -8.904 12.805 20.932 Atomic orbital electron populations 1.22105 0.94962 1.02309 1.02020 1.22144 0.96863 0.96155 1.03961 1.21754 0.92596 0.95129 0.95095 0.88147 1.20387 0.89782 0.75803 0.83087 1.90662 1.66433 1.48348 1.34774 1.46055 1.07351 1.75276 1.08982 1.19258 0.79707 1.03317 0.88543 1.21735 1.10578 0.89791 0.98044 1.23507 1.05565 1.01752 0.86055 1.47946 1.40829 1.05479 1.11483 1.25303 1.00704 0.94257 0.82052 1.22864 1.00968 0.83594 0.89671 1.45614 1.39486 1.24249 1.23094 1.19003 1.12634 1.00990 1.03311 0.89529 1.24856 0.96718 0.99295 0.99015 1.69761 1.15732 1.34891 1.35835 0.85994 0.77192 0.81981 0.79945 1.21301 1.21394 1.20290 1.22940 0.92901 0.88004 0.96864 1.78272 1.18622 0.96001 1.13919 1.75013 1.15329 1.24994 0.98120 1.61804 1.22365 1.38464 1.01908 1.22839 0.88230 1.00161 1.02776 1.22592 1.02831 0.94951 0.92612 0.92110 0.91901 0.92229 0.90387 0.90658 0.76475 0.89629 0.89868 0.79258 0.85024 0.94330 0.88316 0.93091 0.92013 0.93924 0.93689 0.91290 0.91483 0.89541 0.91641 0.95337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.14 37.16 0.30 -0.62 16 2 C -0.15 -1.12 4.87 -26.73 -0.13 -1.25 16 3 C 0.07 0.59 2.32 -68.87 -0.16 0.43 16 4 H 0.10 0.75 7.61 -51.93 -0.40 0.36 16 5 C 0.52 6.06 7.00 -10.99 -0.08 5.98 16 6 O -0.53 -7.86 14.61 5.55 0.08 -7.78 16 7 N -0.72 -7.68 5.55 -61.47 -0.34 -8.02 16 8 C 0.22 2.57 6.23 -5.19 -0.03 2.54 16 9 C -0.06 -0.87 6.61 -82.78 -0.55 -1.41 16 10 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 11 N -0.26 -4.26 3.54 -56.30 -0.20 -4.46 16 12 C 0.08 1.35 5.14 -70.15 -0.36 0.99 16 13 C 0.16 3.16 7.10 -2.84 -0.02 3.14 16 14 N -0.60 -13.67 3.70 -177.90 -0.66 -14.33 16 15 C -0.23 -5.94 10.69 -15.06 -0.16 -6.10 16 16 H 0.09 2.14 7.84 -52.48 -0.41 1.73 16 17 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 18 N -0.92 -24.89 11.30 55.49 0.63 -24.26 16 19 Si 0.92 20.59 29.56 -169.99 -5.02 15.56 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.12 2.19 8.74 -2.97 -0.03 2.17 16 24 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 25 N -0.27 -4.38 12.41 33.29 0.41 -3.96 16 26 N -0.52 -4.96 4.70 -244.59 -1.15 -6.11 16 27 C 0.01 0.05 8.73 60.07 0.52 0.58 16 28 C 0.02 0.16 8.03 60.07 0.48 0.64 16 29 H 0.06 0.33 7.41 -51.93 -0.38 -0.06 16 30 H 0.06 0.36 4.87 -51.93 -0.25 0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.64 6.26 -51.93 -0.32 0.31 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 3.72 8.46 -40.82 -0.35 3.37 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.19 2.39 6.74 -52.49 -0.35 2.04 16 38 H 0.13 2.21 8.14 -51.93 -0.42 1.79 16 39 H 0.04 0.76 6.31 -51.93 -0.33 0.43 16 40 H 0.10 2.26 6.88 -51.93 -0.36 1.90 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.26 4.38 -51.93 -0.23 0.04 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 47 H 0.09 0.96 6.14 -51.93 -0.32 0.64 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.03 0.21 5.32 -51.93 -0.28 -0.06 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -30.62 387.25 -7.42 -38.04 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.32 Total: 3.66 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.48 Total: 6.56 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.51 Total: -61.88 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.08 Total: -7.78 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.62 -7.42 -38.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107181776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.480 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds