Wall clock time and date at job start Tue Mar 31 2020 20:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47466 * 2 1 4 4 H 1.09007 * 109.46976 * 303.36674 * 3 2 1 5 5 C 1.50691 * 109.47457 * 183.35856 * 3 2 1 6 6 O 1.21286 * 119.99958 * 263.88085 * 5 3 2 7 7 N 1.34775 * 119.99736 * 83.87766 * 5 3 2 8 8 C 1.46508 * 119.99817 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.46962 * 180.02562 * 8 7 5 10 10 C 1.35351 * 126.75382 * 94.71625 * 9 8 7 11 11 N 1.35314 * 106.17449 * 179.84916 * 10 9 8 12 12 C 1.46497 * 125.86569 * 180.18034 * 11 10 9 13 13 C 1.53949 * 113.74170 * 14.04348 * 12 11 10 14 14 N 1.47815 * 86.03264 * 222.08014 * 13 12 11 15 15 C 1.36932 * 134.45343 * 204.64253 * 14 13 12 16 16 H 1.08004 * 120.00004 * 184.29426 * 15 14 13 17 17 C 1.38817 * 120.00411 * 4.29796 * 15 14 13 18 18 N 1.31619 * 119.99742 * 5.74789 * 17 15 14 19 19 Si 1.86794 * 120.00180 * 185.74929 * 17 15 14 20 20 H 1.48506 * 109.47230 * 94.98406 * 19 17 15 21 21 H 1.48501 * 109.47157 * 214.97955 * 19 17 15 22 22 H 1.48500 * 109.47386 * 334.97988 * 19 17 15 23 23 C 1.47573 * 91.05388 * 24.54883 * 14 13 12 24 24 N 1.28719 * 108.26349 * 0.41607 * 11 10 9 25 25 N 1.28632 * 110.17550 * 359.73367 * 24 11 10 26 26 N 1.46898 * 109.46777 * 63.35492 * 3 2 1 27 27 C 1.46902 * 111.00607 * 278.12110 * 26 3 2 28 28 C 1.46908 * 110.99766 * 42.07939 * 26 3 2 29 29 H 1.09004 * 109.47427 * 40.76118 * 1 2 3 30 30 H 1.08997 * 109.46760 * 280.76208 * 1 2 3 31 31 H 1.08999 * 109.47588 * 160.76456 * 1 2 3 32 32 H 1.08996 * 109.46899 * 120.00476 * 2 1 3 33 33 H 1.09002 * 109.46647 * 240.00338 * 2 1 3 34 34 H 0.96997 * 120.00594 * 359.97438 * 7 5 3 35 35 H 1.08995 * 109.47224 * 299.99980 * 8 7 5 36 36 H 1.09001 * 109.46715 * 60.00225 * 8 7 5 37 37 H 1.08001 * 126.90665 * 359.97438 * 10 9 8 38 38 H 1.09002 * 112.93965 * 145.62469 * 12 11 10 39 39 H 1.08998 * 113.76482 * 336.34144 * 13 12 11 40 40 H 1.08994 * 113.77358 * 107.74328 * 13 12 11 41 41 H 0.96998 * 119.99869 * 180.02562 * 18 17 15 42 42 H 1.09004 * 113.77282 * 221.15838 * 23 14 13 43 43 H 1.08997 * 113.87367 * 89.76234 * 23 14 13 44 44 H 1.09001 * 109.46715 * 70.92877 * 27 26 3 45 45 H 1.08995 * 109.46935 * 190.92552 * 27 26 3 46 46 H 1.08993 * 109.46770 * 310.92805 * 27 26 3 47 47 H 1.08995 * 109.47196 * 52.59707 * 28 26 3 48 48 H 1.09003 * 109.46741 * 172.59995 * 28 26 3 49 49 H 1.08999 * 109.46631 * 292.58785 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6283 1.9734 -0.8583 5 6 3.5447 1.4433 -0.0832 6 8 4.2079 1.5351 0.9281 7 7 4.1533 1.3418 -1.2814 8 6 5.6162 1.3421 -1.3623 9 6 6.0396 1.2192 -2.8034 10 6 6.3474 2.2324 -3.6463 11 7 6.6713 1.6556 -4.8267 12 6 7.0791 2.3617 -6.0438 13 6 7.4496 3.8374 -5.8096 14 7 6.7029 4.1158 -7.0545 15 6 6.7433 5.1103 -7.9950 16 1 6.0248 5.1205 -8.8013 17 6 7.7076 6.1054 -7.9120 18 7 8.6517 6.0323 -6.9979 19 14 7.6653 7.5482 -9.0977 20 1 6.9460 8.6850 -8.4687 21 1 9.0538 7.9611 -9.4247 22 1 6.9625 7.1456 -10.3424 23 6 5.8987 2.8911 -6.8783 24 7 6.5549 0.3802 -4.6978 25 7 6.1797 0.0875 -3.5027 26 7 1.6177 2.1111 1.2379 27 6 0.2341 2.5928 1.1305 28 6 1.7775 1.2227 2.3970 29 1 -0.3634 0.7784 -0.6710 30 1 -0.3633 0.1919 1.0096 31 1 -0.3634 -0.9703 -0.3386 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.6230 1.2679 -2.0902 35 1 6.0028 2.2734 -0.9486 36 1 6.0115 0.5001 -0.7940 37 1 6.3383 3.2887 -3.4213 38 1 7.8171 1.8112 -6.6273 39 1 6.9939 4.2686 -4.9183 40 1 8.5183 4.0390 -5.8825 41 1 9.3253 6.7278 -6.9396 42 1 5.7315 2.3384 -7.8028 43 1 4.9860 3.0419 -6.3019 44 1 -0.4482 1.7428 1.1394 45 1 0.0107 3.2468 1.9733 46 1 0.1133 3.1460 0.1992 47 1 2.7949 0.8322 2.4180 48 1 1.5837 1.7816 3.3125 49 1 1.0721 0.3953 2.3204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107181776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:37 Heat of formation + Delta-G solvation = 118.090126 kcal Electronic energy + Delta-G solvation = -28941.681808 eV Core-core repulsion = 24943.048780 eV Total energy + Delta-G solvation = -3998.633027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.34592 -41.22419 -39.94319 -38.66480 -36.22743 -34.95763 -33.69951 -33.23748 -32.36368 -29.81808 -29.63679 -28.56991 -27.43205 -26.76860 -25.99174 -23.77079 -23.41945 -22.87900 -22.18539 -21.13748 -20.90670 -19.05810 -18.55832 -18.00314 -17.68622 -17.23239 -16.98358 -16.57193 -16.31668 -15.97196 -15.83729 -15.62571 -15.54848 -14.84933 -14.80166 -14.42579 -14.24932 -13.75354 -13.73316 -13.56605 -13.43081 -13.40846 -13.12466 -12.94948 -12.85196 -12.78443 -12.60870 -12.59438 -12.48747 -12.43165 -12.20744 -12.08041 -11.78811 -11.75893 -11.72551 -11.03353 -10.93628 -10.79358 -10.25235 -10.09772 -9.10609 -9.09294 -7.99792 -5.36706 0.57443 1.23952 1.30030 1.48358 1.50434 1.57964 1.65858 2.30286 2.42836 3.07445 3.12319 3.16250 3.30791 3.34779 3.72308 3.75609 3.84868 3.92690 3.99577 4.01558 4.16601 4.31704 4.38536 4.41212 4.50651 4.52438 4.56949 4.61196 4.67577 4.69852 4.75690 4.81350 4.92760 5.00283 5.01992 5.05777 5.06813 5.12887 5.13511 5.16961 5.35477 5.37763 5.39905 5.66822 5.79176 5.98721 6.14182 6.56620 6.80179 7.27402 7.46621 7.49265 8.34083 9.15443 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.002175 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.109549 B =12872.930858 C =13651.472132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.147 4.147 3 C 0.071 3.929 4 H 0.118 0.882 5 C 0.522 3.478 6 O -0.565 6.565 7 N -0.716 5.716 8 C 0.221 3.779 9 C -0.048 4.048 10 C -0.014 4.014 11 N -0.268 5.268 12 C 0.106 3.894 13 C 0.157 3.843 14 N -0.627 5.627 15 C -0.237 4.237 16 H 0.091 0.909 17 C -0.056 4.056 18 N -0.946 5.946 19 Si 0.979 3.021 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.266 1.266 23 C 0.126 3.874 24 N -0.109 5.109 25 N -0.281 5.281 26 N -0.544 5.544 27 C 0.008 3.992 28 C 0.023 3.977 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.207 0.793 38 H 0.135 0.865 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.253 0.747 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.336 -9.886 13.548 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C -0.041 4.041 4 H 0.136 0.864 5 C 0.308 3.692 6 O -0.443 6.443 7 N -0.369 5.369 8 C 0.096 3.904 9 C -0.187 4.187 10 C -0.167 4.167 11 N -0.061 5.061 12 C 0.003 3.997 13 C 0.031 3.969 14 N -0.355 5.355 15 C -0.365 4.365 16 H 0.108 0.892 17 C -0.250 4.250 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.191 1.191 23 C 0.000 4.000 24 N -0.087 5.087 25 N -0.147 5.147 26 N -0.268 5.268 27 C -0.139 4.139 28 C -0.125 4.125 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.224 0.776 38 H 0.153 0.847 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.282 -10.505 13.424 22.893 hybrid contribution -0.182 1.310 -0.665 1.480 sum -15.464 -9.195 12.758 22.056 Atomic orbital electron populations 1.22071 0.93452 1.03020 1.02401 1.22100 0.98062 0.94950 1.03530 1.21772 0.90440 0.96305 0.95591 0.86422 1.20959 0.90989 0.74730 0.82508 1.90650 1.67472 1.50127 1.36006 1.45970 1.06827 1.74771 1.09308 1.19206 0.80592 1.03475 0.87129 1.21913 1.09457 0.88909 0.98463 1.23833 1.04803 1.02631 0.85414 1.47733 1.41346 1.05441 1.11571 1.24695 1.00110 0.92724 0.82135 1.22737 0.99157 0.85725 0.89312 1.45852 1.40975 1.25121 1.23504 1.19330 1.12056 1.01395 1.03717 0.89178 1.25602 0.96877 1.01736 1.00827 1.69921 1.16478 1.35397 1.37592 0.85057 0.76587 0.79070 0.78587 1.21449 1.22169 1.19053 1.23028 0.93113 0.86114 0.97739 1.78283 1.19746 0.96223 1.14467 1.75003 1.15601 1.25918 0.98178 1.61765 1.24046 1.38866 1.02080 1.22883 0.87083 1.00717 1.03212 1.22489 1.01688 0.95454 0.92852 0.91269 0.91700 0.91603 0.91501 0.90449 0.75458 0.88952 0.90413 0.77606 0.84688 0.93423 0.91247 0.93801 0.90749 0.92556 0.92283 0.91202 0.90801 0.92040 0.91393 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.14 71.98 0.59 -0.81 16 2 C -0.15 -1.92 4.87 30.59 0.15 -1.77 16 3 C 0.07 1.14 2.32 44.17 0.10 1.24 16 4 H 0.12 1.47 7.61 -2.38 -0.02 1.45 16 5 C 0.52 11.57 7.00 87.65 0.61 12.19 16 6 O -0.56 -16.84 14.61 -3.05 -0.04 -16.88 16 7 N -0.72 -14.17 5.55 -466.78 -2.59 -16.76 16 8 C 0.22 4.97 6.23 85.63 0.53 5.51 16 9 C -0.05 -1.26 6.61 41.60 0.28 -0.98 16 10 C -0.01 -0.36 10.72 83.49 0.89 0.53 16 11 N -0.27 -8.22 3.54 -332.04 -1.18 -9.39 16 12 C 0.11 3.49 5.14 46.75 0.24 3.73 16 13 C 0.16 6.32 7.10 86.44 0.61 6.93 16 14 N -0.63 -28.20 3.70 -716.74 -2.65 -30.85 16 15 C -0.24 -11.99 10.69 84.04 0.90 -11.09 16 16 H 0.09 4.35 7.84 -2.91 -0.02 4.33 16 17 C -0.06 -2.93 5.50 84.86 0.47 -2.46 16 18 N -0.95 -52.08 11.30 21.65 0.24 -51.84 16 19 Si 0.98 42.26 29.56 68.60 2.03 44.29 16 20 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.30 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 C 0.13 4.37 8.74 86.49 0.76 5.13 16 24 N -0.11 -3.58 13.17 37.02 0.49 -3.09 16 25 N -0.28 -8.77 12.41 -48.60 -0.60 -9.37 16 26 N -0.54 -9.59 4.70 -927.74 -4.36 -13.95 16 27 C 0.01 0.10 8.73 127.69 1.11 1.21 16 28 C 0.02 0.40 8.03 127.69 1.03 1.42 16 29 H 0.07 0.54 7.41 -2.39 -0.02 0.52 16 30 H 0.06 0.58 4.87 -2.39 -0.01 0.56 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 1.03 6.26 -2.39 -0.01 1.02 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.41 6.77 8.46 -92.71 -0.78 5.98 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.21 4.76 6.74 -2.91 -0.02 4.74 16 38 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 39 H 0.05 1.82 6.31 -2.39 -0.02 1.81 16 40 H 0.07 3.23 6.88 -2.39 -0.02 3.21 16 41 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 42 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 0.53 4.38 -2.39 -0.01 0.52 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.77 7.79 -2.39 -0.02 0.76 16 47 H 0.06 1.39 6.14 -2.39 -0.01 1.37 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.04 0.60 5.32 -2.39 -0.01 0.59 16 Total: -1.00 -65.39 387.25 -0.20 -65.59 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.20 Total: 21.48 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 8.27 Total: 20.78 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -10.65 Total: -135.25 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.04 Total: -16.88 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -65.39 -0.20 -65.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107181776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.678 kcal (2) G-P(sol) polarization free energy of solvation -65.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds