Wall clock time and date at job start Tue Mar 31 2020 20:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 H 1.09005 * 109.47112 * 56.85668 * 3 2 1 5 5 C 1.50698 * 109.47218 * 176.85446 * 3 2 1 6 6 O 1.21290 * 119.99817 * 95.01133 * 5 3 2 7 7 N 1.34777 * 120.00560 * 275.02073 * 5 3 2 8 8 C 1.46493 * 120.00359 * 179.97438 * 7 5 3 9 9 C 1.50699 * 109.47252 * 179.97438 * 8 7 5 10 10 C 1.35352 * 126.74954 * 95.00162 * 9 8 7 11 11 N 1.35312 * 106.17244 * 180.24750 * 10 9 8 12 12 C 1.46499 * 125.86929 * 179.77038 * 11 10 9 13 13 C 1.53949 * 113.73947 * 13.74392 * 12 11 10 14 14 N 1.47817 * 86.03511 * 222.08415 * 13 12 11 15 15 C 1.36934 * 134.45420 * 204.64549 * 14 13 12 16 16 H 1.07997 * 119.99945 * 179.86470 * 15 14 13 17 17 C 1.38817 * 120.00142 * 359.85987 * 15 14 13 18 18 N 1.31620 * 119.99897 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99999 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47382 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46752 * 120.00249 * 19 17 15 22 22 H 1.48498 * 109.47432 * 240.00574 * 19 17 15 23 23 C 1.47578 * 91.05006 * 24.54605 * 14 13 12 24 24 N 1.28716 * 108.26390 * 359.62436 * 11 10 9 25 25 N 1.28633 * 110.18112 * 0.38510 * 24 11 10 26 26 N 1.46898 * 109.47411 * 296.85795 * 3 2 1 27 27 C 1.46899 * 111.00111 * 183.92862 * 26 3 2 28 28 C 1.46903 * 110.99734 * 307.88303 * 26 3 2 29 29 H 1.09002 * 109.47238 * 65.02882 * 1 2 3 30 30 H 1.09005 * 109.47674 * 185.03284 * 1 2 3 31 31 H 1.09007 * 109.46988 * 305.03079 * 1 2 3 32 32 H 1.08997 * 109.46564 * 240.00119 * 2 1 3 33 33 H 1.09004 * 109.47057 * 120.00491 * 2 1 3 34 34 H 0.97004 * 119.99525 * 359.97438 * 7 5 3 35 35 H 1.09004 * 109.47178 * 59.99636 * 8 7 5 36 36 H 1.08999 * 109.47189 * 300.00026 * 8 7 5 37 37 H 1.07995 * 126.91341 * 359.97438 * 10 9 8 38 38 H 1.09002 * 112.94847 * 145.33216 * 12 11 10 39 39 H 1.09003 * 113.76674 * 336.34454 * 13 12 11 40 40 H 1.08994 * 113.77160 * 107.74443 * 13 12 11 41 41 H 0.96992 * 119.99849 * 179.97438 * 18 17 15 42 42 H 1.09000 * 113.77084 * 221.14779 * 23 14 13 43 43 H 1.09004 * 113.87003 * 89.76880 * 23 14 13 44 44 H 1.08997 * 109.47031 * 59.55504 * 27 26 3 45 45 H 1.09000 * 109.47158 * 179.55084 * 27 26 3 46 46 H 1.09000 * 109.47180 * 299.55212 * 27 26 3 47 47 H 1.09000 * 109.47319 * 59.98822 * 28 26 3 48 48 H 1.08996 * 109.46861 * 179.97438 * 28 26 3 49 49 H 1.09001 * 109.47045 * 299.98677 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6314 1.9723 0.8605 5 6 3.5450 1.4431 0.0780 6 8 4.2047 1.5160 -0.9372 7 7 4.1579 1.3626 1.2756 8 6 5.6208 1.3627 1.3513 9 6 6.0493 1.2653 2.7928 10 6 6.3741 0.1373 3.4666 11 7 6.6874 0.5264 4.7241 12 6 7.0986 -0.3564 5.8186 13 6 7.4793 -1.7759 5.3602 14 7 6.7331 -2.2480 6.5456 15 6 6.7790 -3.3755 7.3213 16 1 6.1064 -3.4821 8.1594 17 6 7.6902 -4.3815 7.0303 18 7 8.5103 -4.2515 6.0091 19 14 7.7534 -5.9193 8.0890 20 1 6.7359 -5.8208 9.1662 21 1 7.4704 -7.1106 7.2487 22 1 9.1036 -6.0491 8.6933 23 6 5.9209 -1.0159 6.5587 24 7 6.5652 1.8059 4.7927 25 7 6.1830 2.2766 3.6582 26 7 1.6133 2.1127 -1.2355 27 6 2.1637 3.4724 -1.3139 28 6 1.9867 1.3247 -2.4178 29 1 -0.3634 0.4338 -0.9316 30 1 -0.3634 -1.0237 0.0902 31 1 -0.3633 0.5899 0.8416 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6302 1.3045 2.0875 35 1 6.0069 2.2861 0.9195 36 1 6.0134 0.5104 0.7968 37 1 6.3778 -0.8710 3.0798 38 1 7.8322 0.1021 6.4817 39 1 7.0275 -2.0672 4.4119 40 1 8.5492 -1.9794 5.4033 41 1 9.1472 -4.9542 5.8060 42 1 5.7488 -0.6137 7.5571 43 1 5.0098 -1.0818 5.9640 44 1 3.2525 3.4255 -1.2921 45 1 1.8389 3.9430 -2.2418 46 1 1.8083 4.0577 -0.4658 47 1 1.5090 0.3462 -2.3680 48 1 1.6587 1.8435 -3.3185 49 1 3.0692 1.1997 -2.4441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107211954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:42 Heat of formation + Delta-G solvation = 133.124234 kcal Electronic energy + Delta-G solvation = -29112.306065 eV Core-core repulsion = 25114.324965 eV Total energy + Delta-G solvation = -3997.981099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.12850 -40.64338 -38.42790 -37.24001 -35.27929 -33.56652 -33.17269 -32.02635 -31.33482 -28.54370 -27.98310 -27.58465 -26.30619 -25.29754 -24.43316 -23.46403 -22.04997 -21.85356 -21.10091 -20.12635 -19.66538 -17.78416 -17.33435 -16.89720 -16.64869 -16.08952 -15.68630 -15.42167 -15.18317 -14.99764 -14.93895 -14.64544 -14.13162 -13.82889 -13.49274 -13.34728 -13.30650 -12.97971 -12.60297 -12.39566 -12.26005 -12.15536 -12.01478 -11.91398 -11.88941 -11.71792 -11.43811 -11.24077 -11.22105 -11.02291 -10.99916 -10.97438 -10.58095 -10.46126 -10.24523 -9.93993 -9.61938 -9.25284 -9.21875 -9.11269 -8.32707 -7.30447 -6.09007 -3.44487 1.75948 2.36587 2.38033 2.58896 3.23031 3.26995 3.29210 3.31389 3.67837 4.17854 4.29231 4.47127 4.57177 4.66391 4.69518 4.73755 4.87273 4.95235 5.08566 5.11697 5.16079 5.25224 5.33611 5.35933 5.41161 5.44596 5.48277 5.54523 5.65441 5.69095 5.74041 5.75532 5.82087 5.92582 6.00100 6.05797 6.09638 6.10176 6.24159 6.27035 6.48416 6.63616 6.73243 6.74963 6.97598 7.11995 7.28729 7.63559 7.99369 8.68108 8.71327 9.37599 10.14628 11.08304 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.002288 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.080705 B =12233.934251 C =13261.860924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.066 3.934 4 H 0.103 0.897 5 C 0.489 3.511 6 O -0.540 6.540 7 N -0.719 5.719 8 C 0.214 3.786 9 C -0.064 4.064 10 C -0.015 4.015 11 N -0.264 5.264 12 C 0.077 3.923 13 C 0.164 3.836 14 N -0.598 5.598 15 C -0.232 4.232 16 H 0.088 0.912 17 C -0.001 4.001 18 N -0.919 5.919 19 Si 0.920 3.080 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.120 3.880 24 N -0.088 5.088 25 N -0.267 5.267 26 N -0.513 5.513 27 C 0.010 3.990 28 C -0.004 4.004 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.403 0.597 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.191 0.809 38 H 0.132 0.868 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.259 0.741 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 10.053 -12.030 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.046 4.046 4 H 0.121 0.879 5 C 0.274 3.726 6 O -0.418 6.418 7 N -0.371 5.371 8 C 0.089 3.911 9 C -0.203 4.203 10 C -0.168 4.168 11 N -0.057 5.057 12 C -0.025 4.025 13 C 0.037 3.963 14 N -0.325 5.325 15 C -0.359 4.359 16 H 0.106 0.894 17 C -0.199 4.199 18 N -0.565 5.565 19 Si 0.749 3.251 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.007 4.007 24 N -0.067 5.067 25 N -0.134 5.134 26 N -0.236 5.236 27 C -0.138 4.138 28 C -0.152 4.152 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.237 0.763 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.207 0.793 38 H 0.150 0.850 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.726 11.058 -11.692 19.912 hybrid contribution 0.751 -1.975 0.390 2.148 sum -10.976 9.083 -11.302 18.185 Atomic orbital electron populations 1.21654 0.94043 1.01344 1.02843 1.21603 0.97650 0.93007 1.03184 1.22008 0.88883 0.97936 0.95820 0.87866 1.22052 0.91708 0.75579 0.83217 1.90615 1.67175 1.49910 1.34117 1.46300 1.07408 1.74261 1.09131 1.19276 0.79929 1.03446 0.88496 1.21714 1.10583 0.90005 0.97952 1.23499 1.05599 1.02035 0.85702 1.47921 1.40912 1.06541 1.10300 1.25304 1.00761 0.89254 0.87207 1.22746 1.00370 0.82265 0.90927 1.45679 1.38491 1.17620 1.30721 1.19049 1.16937 0.92727 1.07172 0.89417 1.24861 0.98069 0.98773 0.98187 1.69767 1.23404 1.34355 1.28939 0.85942 0.77680 0.82213 0.79270 1.20192 1.21413 1.21352 1.22926 0.92783 0.86710 0.98281 1.78276 1.18481 0.92082 1.17881 1.75022 1.15258 1.26627 0.96504 1.62512 1.56905 1.02790 1.01387 1.22537 0.99274 0.89493 1.02465 1.22805 1.02579 0.97981 0.91808 0.91586 0.92817 0.92607 0.90780 0.90953 0.76270 0.89900 0.89704 0.79252 0.85023 0.94118 0.89016 0.93124 0.91946 0.93974 0.93687 0.91258 0.91700 0.91454 0.92015 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.66 37.16 0.36 -0.64 16 2 C -0.12 -0.92 4.91 -26.73 -0.13 -1.05 16 3 C 0.07 0.58 2.33 -68.87 -0.16 0.42 16 4 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 5 C 0.49 5.33 6.04 -10.99 -0.07 5.26 16 6 O -0.54 -7.42 12.25 5.55 0.07 -7.35 16 7 N -0.72 -7.39 5.55 -61.48 -0.34 -7.73 16 8 C 0.21 2.47 6.23 -5.20 -0.03 2.44 16 9 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 10 C -0.01 -0.21 10.72 -17.05 -0.18 -0.39 16 11 N -0.26 -4.20 3.54 -56.30 -0.20 -4.40 16 12 C 0.08 1.29 5.14 -70.14 -0.36 0.93 16 13 C 0.16 3.29 6.90 -2.83 -0.02 3.27 16 14 N -0.60 -13.57 3.70 -177.87 -0.66 -14.22 16 15 C -0.23 -5.89 10.70 -15.06 -0.16 -6.05 16 16 H 0.09 2.15 7.83 -52.49 -0.41 1.74 16 17 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 18 N -0.92 -24.82 11.39 55.49 0.63 -24.19 16 19 Si 0.92 20.48 29.55 -169.99 -5.02 15.45 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.12 2.17 8.74 -2.97 -0.03 2.14 16 24 N -0.09 -1.50 13.16 60.35 0.79 -0.71 16 25 N -0.27 -4.34 12.41 33.29 0.41 -3.93 16 26 N -0.51 -4.79 4.54 -244.59 -1.11 -5.90 16 27 C 0.01 0.10 9.20 60.06 0.55 0.65 16 28 C 0.00 -0.04 8.72 60.07 0.52 0.48 16 29 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.07 0.63 6.12 -51.93 -0.32 0.31 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 3.68 8.46 -40.82 -0.35 3.33 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.19 2.36 6.73 -52.49 -0.35 2.01 16 38 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16 39 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 40 H 0.09 2.06 7.16 -51.93 -0.37 1.69 16 41 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.51 5.96 -51.93 -0.31 0.20 16 45 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.57 5.95 -51.93 -0.31 0.26 16 48 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 49 H 0.07 0.82 5.32 -51.93 -0.28 0.54 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -29.70 392.34 -7.49 -37.19 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.63 Total: 3.94 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.35 Total: 5.93 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.47 Total: -61.08 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.07 Total: -7.35 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.70 -7.49 -37.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107211954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.316 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds