Wall clock time and date at job start Tue Mar 31 2020 20:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 H 1.09005 * 109.47112 * 56.85668 * 3 2 1 5 5 C 1.50698 * 109.47218 * 176.85446 * 3 2 1 6 6 O 1.21290 * 119.99817 * 95.01133 * 5 3 2 7 7 N 1.34777 * 120.00560 * 275.02073 * 5 3 2 8 8 C 1.46493 * 120.00359 * 179.97438 * 7 5 3 9 9 C 1.50699 * 109.47252 * 179.97438 * 8 7 5 10 10 C 1.35352 * 126.74954 * 95.00162 * 9 8 7 11 11 N 1.35312 * 106.17244 * 180.24750 * 10 9 8 12 12 C 1.46499 * 125.86929 * 179.77038 * 11 10 9 13 13 C 1.53949 * 113.73947 * 13.74392 * 12 11 10 14 14 N 1.47817 * 86.03511 * 222.08415 * 13 12 11 15 15 C 1.36934 * 134.45420 * 204.64549 * 14 13 12 16 16 H 1.07997 * 119.99945 * 179.86470 * 15 14 13 17 17 C 1.38817 * 120.00142 * 359.85987 * 15 14 13 18 18 N 1.31620 * 119.99897 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99999 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47382 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46752 * 120.00249 * 19 17 15 22 22 H 1.48498 * 109.47432 * 240.00574 * 19 17 15 23 23 C 1.47578 * 91.05006 * 24.54605 * 14 13 12 24 24 N 1.28716 * 108.26390 * 359.62436 * 11 10 9 25 25 N 1.28633 * 110.18112 * 0.38510 * 24 11 10 26 26 N 1.46898 * 109.47411 * 296.85795 * 3 2 1 27 27 C 1.46899 * 111.00111 * 183.92862 * 26 3 2 28 28 C 1.46903 * 110.99734 * 307.88303 * 26 3 2 29 29 H 1.09002 * 109.47238 * 65.02882 * 1 2 3 30 30 H 1.09005 * 109.47674 * 185.03284 * 1 2 3 31 31 H 1.09007 * 109.46988 * 305.03079 * 1 2 3 32 32 H 1.08997 * 109.46564 * 240.00119 * 2 1 3 33 33 H 1.09004 * 109.47057 * 120.00491 * 2 1 3 34 34 H 0.97004 * 119.99525 * 359.97438 * 7 5 3 35 35 H 1.09004 * 109.47178 * 59.99636 * 8 7 5 36 36 H 1.08999 * 109.47189 * 300.00026 * 8 7 5 37 37 H 1.07995 * 126.91341 * 359.97438 * 10 9 8 38 38 H 1.09002 * 112.94847 * 145.33216 * 12 11 10 39 39 H 1.09003 * 113.76674 * 336.34454 * 13 12 11 40 40 H 1.08994 * 113.77160 * 107.74443 * 13 12 11 41 41 H 0.96992 * 119.99849 * 179.97438 * 18 17 15 42 42 H 1.09000 * 113.77084 * 221.14779 * 23 14 13 43 43 H 1.09004 * 113.87003 * 89.76880 * 23 14 13 44 44 H 1.08997 * 109.47031 * 59.55504 * 27 26 3 45 45 H 1.09000 * 109.47158 * 179.55084 * 27 26 3 46 46 H 1.09000 * 109.47180 * 299.55212 * 27 26 3 47 47 H 1.09000 * 109.47319 * 59.98822 * 28 26 3 48 48 H 1.08996 * 109.46861 * 179.97438 * 28 26 3 49 49 H 1.09001 * 109.47045 * 299.98677 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6314 1.9723 0.8605 5 6 3.5450 1.4431 0.0780 6 8 4.2047 1.5160 -0.9372 7 7 4.1579 1.3626 1.2756 8 6 5.6208 1.3627 1.3513 9 6 6.0493 1.2653 2.7928 10 6 6.3741 0.1373 3.4666 11 7 6.6874 0.5264 4.7241 12 6 7.0986 -0.3564 5.8186 13 6 7.4793 -1.7759 5.3602 14 7 6.7331 -2.2480 6.5456 15 6 6.7790 -3.3755 7.3213 16 1 6.1064 -3.4821 8.1594 17 6 7.6902 -4.3815 7.0303 18 7 8.5103 -4.2515 6.0091 19 14 7.7534 -5.9193 8.0890 20 1 6.7359 -5.8208 9.1662 21 1 7.4704 -7.1106 7.2487 22 1 9.1036 -6.0491 8.6933 23 6 5.9209 -1.0159 6.5587 24 7 6.5652 1.8059 4.7927 25 7 6.1830 2.2766 3.6582 26 7 1.6133 2.1127 -1.2355 27 6 2.1637 3.4724 -1.3139 28 6 1.9867 1.3247 -2.4178 29 1 -0.3634 0.4338 -0.9316 30 1 -0.3634 -1.0237 0.0902 31 1 -0.3633 0.5899 0.8416 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6302 1.3045 2.0875 35 1 6.0069 2.2861 0.9195 36 1 6.0134 0.5104 0.7968 37 1 6.3778 -0.8710 3.0798 38 1 7.8322 0.1021 6.4817 39 1 7.0275 -2.0672 4.4119 40 1 8.5492 -1.9794 5.4033 41 1 9.1472 -4.9542 5.8060 42 1 5.7488 -0.6137 7.5571 43 1 5.0098 -1.0818 5.9640 44 1 3.2525 3.4255 -1.2921 45 1 1.8389 3.9430 -2.2418 46 1 1.8083 4.0577 -0.4658 47 1 1.5090 0.3462 -2.3680 48 1 1.6587 1.8435 -3.3185 49 1 3.0692 1.1997 -2.4441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107211954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:41 Heat of formation + Delta-G solvation = 112.114288 kcal Electronic energy + Delta-G solvation = -29113.217125 eV Core-core repulsion = 25114.324965 eV Total energy + Delta-G solvation = -3998.892159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.37078 -41.48282 -39.95741 -38.04526 -36.26377 -34.99809 -33.99046 -33.59820 -32.45261 -29.74165 -29.32567 -28.31538 -27.31066 -26.76292 -26.00590 -24.16112 -23.44270 -22.78527 -22.19508 -21.15425 -20.92446 -19.05795 -18.61079 -18.10170 -17.67681 -17.18929 -16.97995 -16.52719 -16.34792 -16.00621 -15.85400 -15.77575 -15.58858 -14.82740 -14.63506 -14.47442 -14.31398 -13.99506 -13.77171 -13.60807 -13.40976 -13.26549 -13.08043 -12.97019 -12.80788 -12.72257 -12.64195 -12.61214 -12.44449 -12.41388 -12.07059 -11.87913 -11.79806 -11.73309 -11.62569 -11.32571 -11.04346 -10.90147 -10.37925 -10.16053 -9.14034 -9.11280 -8.01611 -5.36758 0.55168 1.22025 1.28090 1.47727 1.49601 1.52284 1.58159 2.35178 2.42485 2.95770 3.06736 3.10552 3.30526 3.32480 3.68689 3.75447 3.87010 3.91075 3.99343 4.09223 4.14555 4.26751 4.45385 4.49998 4.53926 4.57912 4.62265 4.63523 4.68004 4.70852 4.83578 4.90163 4.97283 4.99261 5.00709 5.03770 5.09167 5.09685 5.19508 5.26873 5.36430 5.40493 5.53649 5.64808 5.76871 5.90481 5.99150 6.46070 6.80127 7.15329 7.44233 7.48426 8.33096 9.15371 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.002288 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.080705 B =12233.934251 C =13261.860924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C 0.069 3.931 4 H 0.119 0.881 5 C 0.490 3.510 6 O -0.570 6.570 7 N -0.712 5.712 8 C 0.219 3.781 9 C -0.049 4.049 10 C -0.013 4.013 11 N -0.268 5.268 12 C 0.104 3.896 13 C 0.166 3.834 14 N -0.628 5.628 15 C -0.236 4.236 16 H 0.091 0.909 17 C -0.057 4.057 18 N -0.949 5.949 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.126 3.874 24 N -0.108 5.108 25 N -0.281 5.281 26 N -0.512 5.512 27 C 0.013 3.987 28 C 0.000 4.000 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.411 0.589 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.207 0.793 38 H 0.138 0.862 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.253 0.747 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.022 0.978 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 10.322 -11.832 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C -0.043 4.043 4 H 0.137 0.863 5 C 0.276 3.724 6 O -0.450 6.450 7 N -0.365 5.365 8 C 0.094 3.906 9 C -0.188 4.188 10 C -0.166 4.166 11 N -0.060 5.060 12 C 0.002 3.998 13 C 0.039 3.961 14 N -0.355 5.355 15 C -0.364 4.364 16 H 0.109 0.891 17 C -0.251 4.251 18 N -0.596 5.596 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.000 4.000 24 N -0.086 5.086 25 N -0.148 5.148 26 N -0.235 5.235 27 C -0.135 4.135 28 C -0.148 4.148 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.246 0.754 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.224 0.776 38 H 0.155 0.845 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.477 11.367 -11.475 21.036 hybrid contribution 1.236 -1.965 0.255 2.336 sum -12.241 9.402 -11.221 19.082 Atomic orbital electron populations 1.21611 0.93179 1.01811 1.02782 1.21599 0.98272 0.92189 1.03099 1.22122 0.87242 0.98805 0.96173 0.86290 1.22468 0.92533 0.74717 0.82692 1.90620 1.67982 1.51229 1.35131 1.46219 1.06843 1.73945 1.09465 1.19217 0.80800 1.03503 0.87096 1.21909 1.09434 0.89204 0.98302 1.23820 1.04852 1.02920 0.85043 1.47718 1.41409 1.06333 1.10573 1.24705 1.00143 0.88049 0.86918 1.22615 0.98583 0.84216 0.90686 1.45916 1.40091 1.18197 1.31299 1.19370 1.16223 0.93486 1.07291 0.89084 1.25599 0.98368 1.01507 0.99585 1.69917 1.24274 1.34871 1.30572 0.85009 0.77420 0.78856 0.78002 1.18863 1.21942 1.21927 1.23017 0.92977 0.84644 0.99376 1.78284 1.19605 0.92289 1.18444 1.75010 1.15580 1.27393 0.96798 1.62561 1.56511 1.02842 1.01538 1.22533 0.97810 0.89733 1.03472 1.22752 1.01082 0.98640 0.92306 0.92110 0.92220 0.92057 0.91618 0.90326 0.75375 0.90593 0.88878 0.77640 0.84470 0.93497 0.91855 0.93810 0.90578 0.92756 0.95920 0.90382 0.90640 0.90632 0.91254 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.66 71.98 0.70 -0.93 16 2 C -0.11 -1.58 4.91 30.59 0.15 -1.43 16 3 C 0.07 1.10 2.33 44.17 0.10 1.20 16 4 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 5 C 0.49 10.11 6.04 87.66 0.53 10.64 16 6 O -0.57 -15.47 12.25 -3.06 -0.04 -15.50 16 7 N -0.71 -13.53 5.55 -466.79 -2.59 -16.12 16 8 C 0.22 4.78 6.23 85.63 0.53 5.31 16 9 C -0.05 -1.27 6.61 41.60 0.28 -0.99 16 10 C -0.01 -0.34 10.72 83.49 0.89 0.55 16 11 N -0.27 -8.08 3.54 -332.03 -1.18 -9.26 16 12 C 0.10 3.38 5.14 46.75 0.24 3.62 16 13 C 0.17 6.59 6.90 86.44 0.60 7.19 16 14 N -0.63 -27.97 3.70 -716.66 -2.65 -30.62 16 15 C -0.24 -11.84 10.70 84.04 0.90 -10.94 16 16 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -2.93 5.50 84.86 0.47 -2.46 16 18 N -0.95 -51.87 11.39 21.65 0.25 -51.62 16 19 Si 0.98 42.04 29.55 68.60 2.03 44.07 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 23 C 0.13 4.31 8.74 86.48 0.76 5.07 16 24 N -0.11 -3.51 13.16 37.02 0.49 -3.02 16 25 N -0.28 -8.73 12.41 -48.60 -0.60 -9.34 16 26 N -0.51 -8.83 4.54 -927.75 -4.21 -13.04 16 27 C 0.01 0.22 9.20 127.69 1.18 1.40 16 28 C 0.00 0.00 8.72 127.69 1.11 1.11 16 29 H 0.06 0.80 7.71 -2.39 -0.02 0.78 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 1.03 6.12 -2.39 -0.01 1.02 16 33 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.41 6.63 8.46 -92.71 -0.78 5.84 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.21 4.69 6.73 -2.91 -0.02 4.67 16 38 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 39 H 0.05 1.80 6.31 -2.39 -0.02 1.79 16 40 H 0.06 2.90 7.16 -2.39 -0.02 2.88 16 41 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.02 0.50 5.96 -2.39 -0.01 0.48 16 45 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.20 5.95 -2.39 -0.01 1.19 16 48 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 49 H 0.05 1.10 5.32 -2.39 -0.01 1.08 16 Total: -1.00 -63.00 392.34 0.10 -62.90 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.18 Total: 22.23 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 8.43 Total: 19.32 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -10.50 Total: -133.03 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.04 Total: -15.50 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -63.00 0.10 -62.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107211954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.015 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds