Wall clock time and date at job start Tue Mar 31 2020 20:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 N 1.46897 * 109.47392 * 179.97438 * 3 2 1 5 5 C 1.46892 * 111.00011 * 293.95263 * 4 3 2 6 6 C 1.46896 * 110.99826 * 169.99672 * 4 3 2 7 7 C 1.50703 * 109.47254 * 190.00042 * 6 4 3 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.36935 * 134.45249 * 204.64331 * 16 15 14 18 18 H 1.08003 * 120.00142 * 179.86840 * 17 16 15 19 19 C 1.38809 * 120.00476 * 359.86834 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46957 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.47111 * 209.99709 * 21 19 17 24 24 H 1.48494 * 109.46926 * 329.99957 * 21 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 1.09001 * 109.46429 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47407 * 299.99966 * 1 2 3 30 30 H 1.08994 * 109.46653 * 60.00621 * 1 2 3 31 31 H 1.08998 * 109.47557 * 239.99598 * 2 1 3 32 32 H 1.09000 * 109.46797 * 119.99804 * 2 1 3 33 33 H 1.08998 * 109.47156 * 59.99352 * 3 2 1 34 34 H 1.09007 * 109.46429 * 299.99823 * 3 2 1 35 35 H 1.09011 * 109.47115 * 296.04584 * 5 4 3 36 36 H 1.08996 * 109.47399 * 56.04353 * 5 4 3 37 37 H 1.09000 * 109.47119 * 176.04639 * 5 4 3 38 38 H 1.08998 * 109.47322 * 70.00044 * 6 4 3 39 39 H 1.09002 * 109.47668 * 310.00241 * 6 4 3 40 40 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 41 41 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 42 42 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 43 43 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 44 44 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 45 45 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 46 46 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 47 47 H 0.96996 * 120.00067 * 180.02562 * 20 19 17 48 48 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 49 49 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8860 1.2542 6 6 4.0355 2.7930 -0.2376 7 6 5.5219 2.7183 -0.4743 8 8 6.0871 1.6455 -0.4468 9 7 6.2234 3.8436 -0.7156 10 6 7.6674 3.7701 -0.9517 11 6 8.2066 5.1551 -1.2008 12 6 8.7577 5.9864 -0.2858 13 7 9.0995 7.1112 -0.9559 14 6 9.7360 8.2961 -0.3756 15 6 10.3164 8.0618 1.0309 16 7 9.7529 9.3850 1.3720 17 6 10.0480 10.3409 2.3070 18 1 9.4685 11.2512 2.3502 19 6 11.0921 10.1401 3.1993 20 7 11.7989 9.0309 3.1465 21 14 11.4943 11.4438 4.4753 22 1 10.7157 11.1823 5.7125 23 1 12.9458 11.4014 4.7858 24 1 11.1410 12.7839 3.9420 25 6 8.7467 9.2632 0.2993 26 7 8.7650 6.9628 -2.1900 27 7 8.2298 5.8068 -2.3688 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.7435 1.5266 2.0867 36 1 3.6293 -0.1142 1.4061 37 1 5.1223 0.8327 1.2001 38 1 3.8372 3.4190 0.6324 39 1 3.5494 3.2234 -1.1131 40 1 5.7714 4.7015 -0.7372 41 1 8.1571 3.3413 -0.0774 42 1 7.8619 3.1426 -1.8214 43 1 8.8983 5.7905 0.7669 44 1 10.4291 8.7846 -1.0606 45 1 9.8504 7.2346 1.5662 46 1 11.4055 8.0270 1.0565 47 1 12.5282 8.8903 3.7702 48 1 8.5848 10.1860 -0.2579 49 1 7.8177 8.7901 0.6176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107231055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:19 Heat of formation + Delta-G solvation = 127.287533 kcal Electronic energy + Delta-G solvation = -28163.161624 eV Core-core repulsion = 24164.927427 eV Total energy + Delta-G solvation = -3998.234198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.09965 -39.98060 -38.41022 -37.64134 -35.20875 -33.50153 -33.43396 -32.03402 -31.37134 -28.91370 -27.98207 -27.30937 -26.36646 -25.29136 -24.42107 -23.41859 -21.96456 -21.17748 -21.01298 -20.51889 -19.65447 -17.68168 -17.22705 -16.77712 -16.46450 -16.21276 -15.89613 -15.56672 -15.15774 -15.13183 -14.76252 -14.55325 -14.36102 -14.11424 -13.59725 -13.43373 -13.21864 -13.01533 -12.92564 -12.42656 -12.30036 -12.14276 -12.08647 -12.00891 -11.87475 -11.65428 -11.41715 -11.40090 -11.21355 -10.99487 -10.97478 -10.90370 -10.55964 -10.26656 -9.99708 -9.91341 -9.58824 -9.17825 -9.13397 -9.07547 -8.60353 -7.29602 -6.08128 -3.43687 1.78272 2.38331 2.54347 2.61130 3.14624 3.23758 3.29222 3.31086 3.76360 4.18914 4.33219 4.52239 4.61086 4.67618 4.68574 4.70528 4.90179 4.90252 4.97908 5.04252 5.11690 5.13881 5.17055 5.17924 5.31382 5.37327 5.41530 5.44177 5.49562 5.58678 5.67050 5.73845 5.79477 5.87381 5.99326 6.01576 6.07133 6.13083 6.26469 6.29074 6.50183 6.61464 6.74893 6.76164 6.99519 7.12856 7.39280 7.64181 8.13445 8.70656 8.72203 9.38349 10.15573 11.09076 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.001901 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.545771 B =14727.221630 C =15746.803186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.054 3.946 4 N -0.525 5.525 5 C 0.015 3.985 6 C 0.035 3.965 7 C 0.516 3.484 8 O -0.524 6.524 9 N -0.725 5.725 10 C 0.217 3.783 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.163 3.837 16 N -0.598 5.598 17 C -0.233 4.233 18 H 0.087 0.913 19 C 0.000 4.000 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.267 5.267 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.020 0.980 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.402 0.598 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.190 0.810 44 H 0.132 0.868 45 H 0.041 0.959 46 H 0.092 0.908 47 H 0.259 0.741 48 H 0.062 0.938 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 -13.072 -5.034 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.249 5.249 5 C -0.133 4.133 6 C -0.096 4.096 7 C 0.301 3.699 8 O -0.399 6.399 9 N -0.379 5.379 10 C 0.092 3.908 11 C -0.202 4.202 12 C -0.169 4.169 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.198 4.198 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.007 4.007 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.236 0.764 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.207 0.793 44 H 0.150 0.850 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.913 -13.306 -6.523 21.744 hybrid contribution -0.150 1.340 2.561 2.894 sum -16.062 -11.966 -3.962 20.417 Atomic orbital electron populations 1.21740 0.95583 1.01831 1.01756 1.21538 0.95267 0.96179 1.02964 1.22218 0.86591 0.97697 1.00845 1.61649 1.07184 1.19759 1.36319 1.22628 1.03010 0.99444 0.88184 1.21980 0.93050 0.91672 1.02889 1.20440 0.89048 0.83819 0.76589 1.90680 1.71283 1.28148 1.49788 1.46046 1.08844 1.09830 1.73155 1.19252 0.79507 0.89656 1.02377 1.21737 1.08695 0.99052 0.90671 1.23506 1.04333 0.87679 1.01379 1.47914 1.37421 1.13938 1.06455 1.25286 0.97574 0.82724 0.96904 1.22748 1.00850 0.88818 0.83909 1.45665 1.33160 1.16645 1.37016 1.19002 1.13046 0.96139 1.07821 0.89490 1.24853 0.97905 0.97773 0.99279 1.69760 1.22304 1.25222 1.39171 0.86014 0.77592 0.80456 0.81057 1.21295 1.21329 1.20321 1.22926 0.92631 0.96098 0.89068 1.78279 1.15178 1.13802 0.99537 1.75025 1.15575 0.99699 1.23063 0.92490 0.92893 0.92629 0.90959 0.91834 0.94800 0.90696 0.96142 0.91185 0.89221 0.91801 0.87796 0.76425 0.89707 0.89750 0.79256 0.85021 0.94108 0.89008 0.93073 0.91971 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.82 5.87 -26.73 -0.16 -0.98 16 3 C 0.05 0.39 4.96 -3.83 -0.02 0.38 16 4 N -0.53 -4.98 4.50 -244.38 -1.10 -6.08 16 5 C 0.02 0.14 9.01 60.06 0.54 0.68 16 6 C 0.04 0.30 5.45 -4.98 -0.03 0.27 16 7 C 0.52 5.78 7.56 -10.98 -0.08 5.70 16 8 O -0.52 -7.70 14.31 5.55 0.08 -7.62 16 9 N -0.73 -7.48 5.55 -61.47 -0.34 -7.83 16 10 C 0.22 2.53 6.23 -5.19 -0.03 2.50 16 11 C -0.06 -0.86 6.61 -82.78 -0.55 -1.41 16 12 C -0.02 -0.22 10.72 -17.04 -0.18 -0.40 16 13 N -0.26 -4.22 3.54 -56.31 -0.20 -4.42 16 14 C 0.08 1.30 5.14 -70.15 -0.36 0.94 16 15 C 0.16 3.29 6.90 -2.84 -0.02 3.27 16 16 N -0.60 -13.58 3.70 -177.90 -0.66 -14.24 16 17 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 18 H 0.09 2.13 7.83 -52.48 -0.41 1.72 16 19 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 20 N -0.92 -24.84 11.39 55.49 0.63 -24.21 16 21 Si 0.92 20.49 29.55 -169.99 -5.02 15.47 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 C 0.12 2.17 8.74 -2.97 -0.03 2.15 16 26 N -0.09 -1.52 13.17 60.35 0.79 -0.73 16 27 N -0.27 -4.36 12.41 33.29 0.41 -3.95 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.44 6.47 -51.93 -0.34 0.10 16 33 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 34 H 0.07 0.49 7.93 -51.92 -0.41 0.08 16 35 H 0.02 0.17 8.14 -51.92 -0.42 -0.25 16 36 H 0.07 0.60 6.30 -51.93 -0.33 0.27 16 37 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 38 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 39 H 0.10 0.71 7.93 -51.93 -0.41 0.30 16 40 H 0.40 3.57 8.46 -40.82 -0.35 3.23 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.19 2.36 6.74 -52.49 -0.35 2.01 16 44 H 0.13 2.16 8.14 -51.93 -0.42 1.74 16 45 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 46 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 47 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -30.60 399.72 -7.99 -38.59 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.81 Total: 2.53 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -0.80 Total: 6.46 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.46 Total: -61.45 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.08 Total: -7.62 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.60 -7.99 -38.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107231055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.874 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds