Wall clock time and date at job start Tue Mar 31 2020 20:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 N 1.46897 * 109.47392 * 179.97438 * 3 2 1 5 5 C 1.46892 * 111.00011 * 293.95263 * 4 3 2 6 6 C 1.46896 * 110.99826 * 169.99672 * 4 3 2 7 7 C 1.50703 * 109.47254 * 190.00042 * 6 4 3 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.36935 * 134.45249 * 204.64331 * 16 15 14 18 18 H 1.08003 * 120.00142 * 179.86840 * 17 16 15 19 19 C 1.38809 * 120.00476 * 359.86834 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46957 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.47111 * 209.99709 * 21 19 17 24 24 H 1.48494 * 109.46926 * 329.99957 * 21 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 1.09001 * 109.46429 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47407 * 299.99966 * 1 2 3 30 30 H 1.08994 * 109.46653 * 60.00621 * 1 2 3 31 31 H 1.08998 * 109.47557 * 239.99598 * 2 1 3 32 32 H 1.09000 * 109.46797 * 119.99804 * 2 1 3 33 33 H 1.08998 * 109.47156 * 59.99352 * 3 2 1 34 34 H 1.09007 * 109.46429 * 299.99823 * 3 2 1 35 35 H 1.09011 * 109.47115 * 296.04584 * 5 4 3 36 36 H 1.08996 * 109.47399 * 56.04353 * 5 4 3 37 37 H 1.09000 * 109.47119 * 176.04639 * 5 4 3 38 38 H 1.08998 * 109.47322 * 70.00044 * 6 4 3 39 39 H 1.09002 * 109.47668 * 310.00241 * 6 4 3 40 40 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 41 41 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 42 42 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 43 43 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 44 44 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 45 45 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 46 46 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 47 47 H 0.96996 * 120.00067 * 180.02562 * 20 19 17 48 48 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 49 49 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8860 1.2542 6 6 4.0355 2.7930 -0.2376 7 6 5.5219 2.7183 -0.4743 8 8 6.0871 1.6455 -0.4468 9 7 6.2234 3.8436 -0.7156 10 6 7.6674 3.7701 -0.9517 11 6 8.2066 5.1551 -1.2008 12 6 8.7577 5.9864 -0.2858 13 7 9.0995 7.1112 -0.9559 14 6 9.7360 8.2961 -0.3756 15 6 10.3164 8.0618 1.0309 16 7 9.7529 9.3850 1.3720 17 6 10.0480 10.3409 2.3070 18 1 9.4685 11.2512 2.3502 19 6 11.0921 10.1401 3.1993 20 7 11.7989 9.0309 3.1465 21 14 11.4943 11.4438 4.4753 22 1 10.7157 11.1823 5.7125 23 1 12.9458 11.4014 4.7858 24 1 11.1410 12.7839 3.9420 25 6 8.7467 9.2632 0.2993 26 7 8.7650 6.9628 -2.1900 27 7 8.2298 5.8068 -2.3688 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.7435 1.5266 2.0867 36 1 3.6293 -0.1142 1.4061 37 1 5.1223 0.8327 1.2001 38 1 3.8372 3.4190 0.6324 39 1 3.5494 3.2234 -1.1131 40 1 5.7714 4.7015 -0.7372 41 1 8.1571 3.3413 -0.0774 42 1 7.8619 3.1426 -1.8214 43 1 8.8983 5.7905 0.7669 44 1 10.4291 8.7846 -1.0606 45 1 9.8504 7.2346 1.5662 46 1 11.4055 8.0270 1.0565 47 1 12.5282 8.8903 3.7702 48 1 8.5848 10.1860 -0.2579 49 1 7.8177 8.7901 0.6176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107231055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:18 Heat of formation + Delta-G solvation = 105.691843 kcal Electronic energy + Delta-G solvation = -28164.098084 eV Core-core repulsion = 24164.927427 eV Total energy + Delta-G solvation = -3999.170657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.34744 -40.84973 -39.94056 -38.33963 -36.22319 -34.95061 -34.06672 -33.65379 -32.51085 -29.80866 -29.60872 -27.95512 -27.33965 -26.76353 -25.99518 -24.09348 -23.41274 -22.31752 -21.64556 -21.37790 -21.12559 -19.05171 -18.53893 -17.93530 -17.55293 -17.00518 -16.92613 -16.88507 -16.36372 -16.04177 -15.90662 -15.64421 -15.37911 -15.05687 -14.81565 -14.50999 -14.29548 -14.14868 -13.71666 -13.64231 -13.57885 -13.39301 -13.00903 -12.92676 -12.76940 -12.73847 -12.63771 -12.61148 -12.43333 -12.32997 -12.10824 -11.93079 -11.78665 -11.72169 -11.43165 -11.06585 -10.93547 -10.83680 -10.26246 -10.08913 -9.26732 -9.10793 -8.01081 -5.36295 0.57116 1.23884 1.29666 1.48497 1.49863 1.57406 1.68479 2.28195 2.42813 3.06263 3.07890 3.13202 3.31542 3.34395 3.73776 3.84092 3.92160 3.99468 4.01285 4.15801 4.16184 4.31304 4.36060 4.49658 4.51662 4.56318 4.57650 4.59674 4.61492 4.70693 4.72031 4.86487 4.91084 4.93133 5.01165 5.05958 5.10631 5.12326 5.25512 5.32258 5.36799 5.40398 5.45428 5.66550 5.77343 5.95705 6.12042 6.57709 6.80352 7.28639 7.46461 7.48898 8.33735 9.15660 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.001901 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.545771 B =14727.221630 C =15746.803186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.545 5.545 5 C 0.020 3.980 6 C 0.039 3.961 7 C 0.515 3.485 8 O -0.562 6.562 9 N -0.717 5.717 10 C 0.222 3.778 11 C -0.048 4.048 12 C -0.014 4.014 13 N -0.268 5.268 14 C 0.105 3.895 15 C 0.165 3.835 16 N -0.627 5.627 17 C -0.239 4.239 18 H 0.091 0.909 19 C -0.055 4.055 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.126 3.874 26 N -0.108 5.108 27 N -0.281 5.281 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.411 0.589 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.207 0.793 44 H 0.138 0.862 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.253 0.747 48 H 0.076 0.924 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.598 -12.651 -5.082 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.269 5.269 5 C -0.128 4.128 6 C -0.092 4.092 7 C 0.302 3.698 8 O -0.441 6.441 9 N -0.371 5.371 10 C 0.096 3.904 11 C -0.187 4.187 12 C -0.167 4.167 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.038 3.962 16 N -0.354 5.354 17 C -0.366 4.366 18 H 0.109 0.891 19 C -0.249 4.249 20 N -0.596 5.596 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.192 1.192 25 C 0.000 4.000 26 N -0.087 5.087 27 N -0.148 5.148 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.247 0.753 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.224 0.776 44 H 0.155 0.845 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.859 -12.861 -6.610 22.980 hybrid contribution 0.377 1.129 2.507 2.775 sum -17.482 -11.732 -4.103 21.450 Atomic orbital electron populations 1.21707 0.94414 1.02212 1.02186 1.21517 0.96237 0.95890 1.02168 1.22259 0.85198 0.98037 1.01634 1.61624 1.08527 1.20469 1.36317 1.22514 1.01449 1.00085 0.88733 1.22027 0.90897 0.91741 1.04540 1.20963 0.90160 0.83161 0.75554 1.90671 1.72239 1.29571 1.51572 1.45949 1.08232 1.10253 1.72636 1.19199 0.80465 0.88222 1.02488 1.21930 1.07739 0.99368 0.89705 1.23829 1.03657 0.87056 1.02143 1.47714 1.37781 1.14069 1.06527 1.24690 0.96909 0.82659 0.95520 1.22621 0.99293 0.88273 0.85964 1.45896 1.34939 1.17094 1.37518 1.19341 1.12555 0.96853 1.07875 0.89110 1.25588 0.98332 0.99629 1.01371 1.69914 1.22875 1.26857 1.39944 0.85078 0.76612 0.78825 0.78794 1.21341 1.22132 1.19196 1.23016 0.92318 0.97045 0.87653 1.78287 1.16218 1.14391 0.99815 1.75013 1.15853 0.99786 1.24100 0.92194 0.92420 0.92194 0.92171 0.92240 0.94009 0.89751 0.95284 0.90743 0.91663 0.89911 0.85783 0.75343 0.88834 0.90497 0.77631 0.84466 0.93488 0.91836 0.93803 0.90611 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.48 5.87 30.60 0.18 -1.30 16 3 C 0.06 0.71 4.96 86.30 0.43 1.13 16 4 N -0.54 -9.57 4.50 -927.07 -4.17 -13.74 16 5 C 0.02 0.37 9.01 127.69 1.15 1.52 16 6 C 0.04 0.58 5.45 85.56 0.47 1.04 16 7 C 0.51 10.88 7.56 87.66 0.66 11.55 16 8 O -0.56 -16.39 14.31 -3.04 -0.04 -16.43 16 9 N -0.72 -13.57 5.55 -466.79 -2.59 -16.16 16 10 C 0.22 4.87 6.23 85.63 0.53 5.40 16 11 C -0.05 -1.24 6.61 41.60 0.28 -0.97 16 12 C -0.01 -0.36 10.72 83.49 0.89 0.54 16 13 N -0.27 -8.14 3.54 -332.06 -1.18 -9.31 16 14 C 0.10 3.40 5.14 46.75 0.24 3.64 16 15 C 0.16 6.59 6.90 86.44 0.60 7.19 16 16 N -0.63 -28.00 3.70 -716.75 -2.65 -30.65 16 17 C -0.24 -12.00 10.70 84.03 0.90 -11.10 16 18 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 19 C -0.06 -2.85 5.50 84.86 0.47 -2.39 16 20 N -0.95 -51.91 11.39 21.65 0.25 -51.66 16 21 Si 0.98 42.06 29.55 68.60 2.03 44.09 16 22 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 25 C 0.13 4.32 8.74 86.49 0.76 5.07 16 26 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 27 N -0.28 -8.77 12.41 -48.60 -0.60 -9.37 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.77 6.47 -2.39 -0.02 0.75 16 33 H 0.04 0.47 8.12 -2.39 -0.02 0.45 16 34 H 0.08 0.90 7.93 -2.38 -0.02 0.88 16 35 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.07 1.24 6.30 -2.39 -0.02 1.22 16 37 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 38 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 39 H 0.12 1.35 7.93 -2.39 -0.02 1.33 16 40 H 0.41 6.36 8.46 -92.71 -0.78 5.58 16 41 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.21 4.71 6.74 -2.91 -0.02 4.69 16 44 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 45 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 46 H 0.06 2.91 7.16 -2.39 -0.02 2.89 16 47 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 48 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 49 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -65.31 399.72 -0.04 -65.35 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.18 Total: 20.26 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 8.26 Total: 20.69 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -10.46 Total: -133.96 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.04 Total: -16.43 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -65.31 -0.04 -65.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107231055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.037 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds