Wall clock time and date at job start Tue Mar 31 2020 20:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 N 1.46895 * 109.47048 * 119.99974 * 2 1 3 5 5 C 1.46896 * 111.00332 * 56.04569 * 4 2 1 6 6 C 1.46904 * 110.99959 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.46892 * 169.99657 * 6 4 2 8 8 O 1.21283 * 120.00521 * 359.72736 * 7 6 4 9 9 N 1.34784 * 119.99774 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.35351 * 126.75692 * 94.71126 * 11 10 9 13 13 N 1.35313 * 106.17914 * 179.84733 * 12 11 10 14 14 C 1.46501 * 125.86874 * 180.18435 * 13 12 11 15 15 C 1.53939 * 113.74196 * 14.04027 * 14 13 12 16 16 N 1.47811 * 86.03893 * 222.08403 * 15 14 13 17 17 C 1.36935 * 134.46055 * 204.64589 * 16 15 14 18 18 H 1.07998 * 120.00245 * 179.86140 * 17 16 15 19 19 C 1.38810 * 119.99953 * 359.86489 * 17 16 15 20 20 N 1.31619 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00295 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46671 * 89.99968 * 21 19 17 23 23 H 1.48495 * 109.47258 * 209.99890 * 21 19 17 24 24 H 1.48501 * 109.46781 * 330.00211 * 21 19 17 25 25 C 1.47587 * 91.04823 * 24.54715 * 16 15 14 26 26 N 1.28722 * 108.26119 * 0.41861 * 13 12 11 27 27 N 1.28636 * 110.17653 * 359.73556 * 26 13 12 28 28 H 1.08998 * 109.47428 * 300.00082 * 1 2 3 29 29 H 1.09000 * 109.47481 * 60.00167 * 1 2 3 30 30 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46921 * 240.00005 * 2 1 3 32 32 H 1.09002 * 109.47243 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.46970 * 299.99890 * 3 2 1 34 34 H 1.08998 * 109.47142 * 59.99743 * 3 2 1 35 35 H 1.08997 * 109.47309 * 183.95255 * 5 4 2 36 36 H 1.09000 * 109.47355 * 303.95541 * 5 4 2 37 37 H 1.09004 * 109.47107 * 63.95049 * 5 4 2 38 38 H 1.09001 * 109.46900 * 50.00317 * 6 4 2 39 39 H 1.08993 * 109.47169 * 290.00038 * 6 4 2 40 40 H 0.97005 * 119.99846 * 359.72750 * 9 7 6 41 41 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 42 42 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 43 43 H 1.08000 * 126.90979 * 359.97438 * 12 11 10 44 44 H 1.09003 * 112.93870 * 145.63155 * 14 13 12 45 45 H 1.08999 * 113.77186 * 336.34625 * 15 14 13 46 46 H 1.08993 * 113.77120 * 107.74492 * 15 14 13 47 47 H 0.96998 * 120.00078 * 180.02562 * 20 19 17 48 48 H 1.09002 * 113.76889 * 221.14980 * 25 16 15 49 49 H 1.09000 * 113.86794 * 89.77341 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4730 -2.0534 1.2816 6 6 3.4882 -0.7115 1.2337 7 6 3.9528 -1.2039 2.5800 8 8 3.1407 -1.5042 3.4293 9 7 5.2710 -1.3058 2.8421 10 6 5.7227 -1.7788 4.1530 11 6 7.2292 -1.7995 4.1876 12 6 8.0422 -0.8236 4.6551 13 7 9.3070 -1.2754 4.4905 14 6 10.5297 -0.5572 4.8584 15 6 10.2850 0.6525 5.7783 16 7 11.2724 1.3617 4.9376 17 6 12.1124 2.4250 5.1348 18 1 12.7576 2.7590 4.3358 19 6 12.1346 3.0737 6.3619 20 7 11.3487 2.6663 7.3359 21 14 13.2810 4.5237 6.6313 22 1 12.5842 5.7812 6.2591 23 1 13.6777 4.5821 8.0610 24 1 14.4922 4.3605 5.7877 25 6 10.9914 0.4625 3.8015 26 7 9.2513 -2.4425 3.9505 27 7 8.0262 -2.7839 3.7570 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.7949 -2.5186 2.2133 36 1 0.3842 -2.0100 1.2545 37 1 1.8342 -2.6417 0.4380 38 1 3.8686 0.2957 1.0641 39 1 3.8611 -1.3767 0.4550 40 1 5.9205 -1.0660 2.1627 41 1 5.3511 -1.1093 4.9287 42 1 5.3410 -2.7846 4.3277 43 1 7.7417 0.1242 5.0768 44 1 11.3231 -1.2192 5.2055 45 1 9.2763 1.0599 5.7096 46 1 10.6128 0.4964 6.8060 47 1 11.3639 3.1198 8.1932 48 1 11.8822 0.1549 3.2539 49 1 10.1910 0.8124 3.1495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107238755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:23 Heat of formation + Delta-G solvation = 134.646807 kcal Electronic energy + Delta-G solvation = -28500.789703 eV Core-core repulsion = 24502.874627 eV Total energy + Delta-G solvation = -3997.915076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.09617 -40.05195 -38.41175 -37.96632 -35.20394 -33.43428 -32.44742 -32.01013 -31.33972 -29.44240 -28.00341 -27.37680 -25.98519 -25.29509 -24.60455 -24.35050 -21.96192 -21.15512 -20.73712 -20.17403 -19.64755 -17.71442 -17.25577 -16.86465 -16.52974 -16.28128 -15.73131 -15.34087 -15.17673 -15.12516 -14.74629 -14.63172 -14.15842 -14.01755 -13.53653 -13.21191 -13.11629 -12.93650 -12.84621 -12.55428 -12.31256 -12.22485 -12.12689 -12.06858 -11.86585 -11.62835 -11.40737 -11.34883 -11.20612 -10.98989 -10.97789 -10.96393 -10.55277 -10.26119 -9.98570 -9.90465 -9.58383 -9.16359 -9.13070 -9.07104 -8.57115 -7.28802 -6.07229 -3.42800 1.78845 2.38631 2.55603 2.61555 3.14887 3.24598 3.29941 3.31854 3.75608 4.19692 4.33647 4.53769 4.58769 4.64458 4.69154 4.71241 4.89183 4.95024 4.97644 5.00103 5.13206 5.17922 5.26634 5.29943 5.35085 5.38013 5.48071 5.48555 5.50846 5.59333 5.60488 5.73728 5.79705 5.91276 5.99319 6.02132 6.07911 6.13747 6.26916 6.29834 6.50982 6.64979 6.76962 6.79751 7.00126 7.13663 7.40319 7.65028 8.14687 8.70913 8.72945 9.39196 10.16409 11.09975 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.002061 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.771986 B =13581.938903 C =14816.707608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.150 4.150 4 N -0.519 5.519 5 C 0.014 3.986 6 C 0.030 3.970 7 C 0.516 3.484 8 O -0.524 6.524 9 N -0.726 5.726 10 C 0.217 3.783 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.163 3.837 16 N -0.598 5.598 17 C -0.233 4.233 18 H 0.087 0.913 19 C -0.001 4.001 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.268 5.268 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.019 0.981 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.402 0.598 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.191 0.809 44 H 0.132 0.868 45 H 0.042 0.958 46 H 0.092 0.908 47 H 0.259 0.741 48 H 0.062 0.938 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 -5.879 -12.869 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.208 4.208 4 N -0.244 5.244 5 C -0.133 4.133 6 C -0.101 4.101 7 C 0.301 3.699 8 O -0.399 6.399 9 N -0.379 5.379 10 C 0.092 3.908 11 C -0.202 4.202 12 C -0.168 4.168 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.199 4.199 20 N -0.564 5.564 21 Si 0.749 3.251 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.007 4.007 26 N -0.068 5.068 27 N -0.135 5.135 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.208 0.792 44 H 0.150 0.850 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.225 -6.770 -12.148 21.370 hybrid contribution 0.796 1.513 -0.412 1.759 sum -15.429 -5.257 -12.560 20.578 Atomic orbital electron populations 1.21906 0.93991 1.02169 1.02367 1.21668 0.96035 0.95101 0.90468 1.21942 1.01020 0.95231 1.02558 1.61710 1.05470 1.18332 1.38898 1.22635 1.00726 0.88027 1.01948 1.22062 0.90172 1.03135 0.94692 1.20447 0.81918 0.77840 0.89664 1.90678 1.52965 1.48482 1.47776 1.46049 1.07116 1.68259 1.16490 1.19249 0.85195 1.01201 0.85129 1.21738 0.96841 0.93389 1.08204 1.23513 0.84024 1.02734 1.06555 1.47917 1.08268 1.12296 1.37255 1.25289 0.83053 0.92852 1.01293 1.22746 0.93497 0.83302 0.96773 1.45672 1.43253 1.35420 1.08157 1.18996 1.14144 1.04904 0.97922 0.89492 1.24858 0.99464 0.99673 0.95870 1.69758 1.40436 1.42503 1.03752 0.86012 0.79962 0.81729 0.77404 1.21263 1.21346 1.20332 1.22928 0.98387 0.87696 0.91716 1.78275 1.15257 0.98467 1.14829 1.75018 0.95737 1.24249 1.18447 0.91514 0.92162 0.92368 0.94245 0.92501 0.92037 0.91422 0.89275 0.90968 0.96290 0.87354 0.91959 0.76452 0.89624 0.89865 0.79212 0.85034 0.94077 0.89015 0.93067 0.91983 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.84 37.16 0.33 -0.65 16 2 C 0.08 0.56 2.68 -67.71 -0.18 0.38 16 3 C -0.15 -1.02 8.99 37.16 0.33 -0.68 16 4 N -0.52 -4.95 4.37 -236.34 -1.03 -5.98 16 5 C 0.01 0.13 8.84 60.06 0.53 0.66 16 6 C 0.03 0.27 5.26 -4.98 -0.03 0.24 16 7 C 0.52 5.85 7.55 -10.98 -0.08 5.76 16 8 O -0.52 -7.73 14.32 5.56 0.08 -7.65 16 9 N -0.73 -7.56 5.55 -61.48 -0.34 -7.91 16 10 C 0.22 2.55 6.23 -5.19 -0.03 2.52 16 11 C -0.06 -0.87 6.61 -82.78 -0.55 -1.41 16 12 C -0.01 -0.21 10.72 -17.05 -0.18 -0.39 16 13 N -0.26 -4.24 3.54 -56.30 -0.20 -4.44 16 14 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 15 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 16 N -0.60 -13.62 3.70 -177.89 -0.66 -14.28 16 17 C -0.23 -5.93 10.70 -15.06 -0.16 -6.10 16 18 H 0.09 2.14 7.83 -52.49 -0.41 1.73 16 19 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 20 N -0.92 -24.92 11.39 55.49 0.63 -24.29 16 21 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.12 2.18 8.74 -2.97 -0.03 2.15 16 26 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 27 N -0.27 -4.37 12.41 33.29 0.41 -3.96 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.37 6.26 -51.93 -0.33 0.05 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.36 6.20 -51.93 -0.32 0.04 16 33 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.03 5.89 -51.93 -0.31 0.73 16 36 H 0.07 0.60 6.01 -51.93 -0.31 0.29 16 37 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.11 0.80 5.83 -51.93 -0.30 0.49 16 39 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.40 3.62 8.46 -40.82 -0.35 3.28 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.19 2.39 6.74 -52.49 -0.35 2.04 16 44 H 0.13 2.17 8.14 -51.93 -0.42 1.74 16 45 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 46 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 47 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -30.61 394.70 -7.49 -38.11 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.58 Total: 3.07 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.52 Total: 6.60 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -0.39 Total: -61.59 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.08 Total: -7.65 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.61 -7.49 -38.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.753 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds