Wall clock time and date at job start Tue Mar 31 2020 20:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 N 1.46895 * 109.47048 * 119.99974 * 2 1 3 5 5 C 1.46896 * 111.00332 * 56.04569 * 4 2 1 6 6 C 1.46904 * 110.99959 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.46892 * 169.99657 * 6 4 2 8 8 O 1.21283 * 120.00521 * 359.72736 * 7 6 4 9 9 N 1.34784 * 119.99774 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 C 1.35351 * 126.75692 * 94.71126 * 11 10 9 13 13 N 1.35313 * 106.17914 * 179.84733 * 12 11 10 14 14 C 1.46501 * 125.86874 * 180.18435 * 13 12 11 15 15 C 1.53939 * 113.74196 * 14.04027 * 14 13 12 16 16 N 1.47811 * 86.03893 * 222.08403 * 15 14 13 17 17 C 1.36935 * 134.46055 * 204.64589 * 16 15 14 18 18 H 1.07998 * 120.00245 * 179.86140 * 17 16 15 19 19 C 1.38810 * 119.99953 * 359.86489 * 17 16 15 20 20 N 1.31619 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00295 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46671 * 89.99968 * 21 19 17 23 23 H 1.48495 * 109.47258 * 209.99890 * 21 19 17 24 24 H 1.48501 * 109.46781 * 330.00211 * 21 19 17 25 25 C 1.47587 * 91.04823 * 24.54715 * 16 15 14 26 26 N 1.28722 * 108.26119 * 0.41861 * 13 12 11 27 27 N 1.28636 * 110.17653 * 359.73556 * 26 13 12 28 28 H 1.08998 * 109.47428 * 300.00082 * 1 2 3 29 29 H 1.09000 * 109.47481 * 60.00167 * 1 2 3 30 30 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46921 * 240.00005 * 2 1 3 32 32 H 1.09002 * 109.47243 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.46970 * 299.99890 * 3 2 1 34 34 H 1.08998 * 109.47142 * 59.99743 * 3 2 1 35 35 H 1.08997 * 109.47309 * 183.95255 * 5 4 2 36 36 H 1.09000 * 109.47355 * 303.95541 * 5 4 2 37 37 H 1.09004 * 109.47107 * 63.95049 * 5 4 2 38 38 H 1.09001 * 109.46900 * 50.00317 * 6 4 2 39 39 H 1.08993 * 109.47169 * 290.00038 * 6 4 2 40 40 H 0.97005 * 119.99846 * 359.72750 * 9 7 6 41 41 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 42 42 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 43 43 H 1.08000 * 126.90979 * 359.97438 * 12 11 10 44 44 H 1.09003 * 112.93870 * 145.63155 * 14 13 12 45 45 H 1.08999 * 113.77186 * 336.34625 * 15 14 13 46 46 H 1.08993 * 113.77120 * 107.74492 * 15 14 13 47 47 H 0.96998 * 120.00078 * 180.02562 * 20 19 17 48 48 H 1.09002 * 113.76889 * 221.14980 * 25 16 15 49 49 H 1.09000 * 113.86794 * 89.77341 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4730 -2.0534 1.2816 6 6 3.4882 -0.7115 1.2337 7 6 3.9528 -1.2039 2.5800 8 8 3.1407 -1.5042 3.4293 9 7 5.2710 -1.3058 2.8421 10 6 5.7227 -1.7788 4.1530 11 6 7.2292 -1.7995 4.1876 12 6 8.0422 -0.8236 4.6551 13 7 9.3070 -1.2754 4.4905 14 6 10.5297 -0.5572 4.8584 15 6 10.2850 0.6525 5.7783 16 7 11.2724 1.3617 4.9376 17 6 12.1124 2.4250 5.1348 18 1 12.7576 2.7590 4.3358 19 6 12.1346 3.0737 6.3619 20 7 11.3487 2.6663 7.3359 21 14 13.2810 4.5237 6.6313 22 1 12.5842 5.7812 6.2591 23 1 13.6777 4.5821 8.0610 24 1 14.4922 4.3605 5.7877 25 6 10.9914 0.4625 3.8015 26 7 9.2513 -2.4425 3.9505 27 7 8.0262 -2.7839 3.7570 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.7949 -2.5186 2.2133 36 1 0.3842 -2.0100 1.2545 37 1 1.8342 -2.6417 0.4380 38 1 3.8686 0.2957 1.0641 39 1 3.8611 -1.3767 0.4550 40 1 5.9205 -1.0660 2.1627 41 1 5.3511 -1.1093 4.9287 42 1 5.3410 -2.7846 4.3277 43 1 7.7417 0.1242 5.0768 44 1 11.3231 -1.2192 5.2055 45 1 9.2763 1.0599 5.7096 46 1 10.6128 0.4964 6.8060 47 1 11.3639 3.1198 8.1932 48 1 11.8822 0.1549 3.2539 49 1 10.1910 0.8124 3.1495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107238755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:22 Heat of formation + Delta-G solvation = 112.836070 kcal Electronic energy + Delta-G solvation = -28501.735487 eV Core-core repulsion = 24502.874627 eV Total energy + Delta-G solvation = -3998.860860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.34907 -40.91301 -39.94090 -38.68844 -36.23366 -34.94987 -33.66690 -33.08604 -32.44576 -30.17706 -29.69603 -28.22491 -26.96235 -26.61292 -26.00161 -25.27248 -23.41715 -22.35604 -21.57853 -21.13154 -20.82178 -19.05484 -18.56822 -17.98391 -17.57643 -17.22066 -16.96727 -16.76323 -16.23484 -15.94988 -15.84793 -15.68713 -15.44397 -14.88000 -14.78044 -14.48759 -14.26707 -13.89622 -13.72435 -13.58433 -13.42924 -13.38161 -13.12002 -12.99552 -12.85863 -12.74663 -12.68631 -12.61008 -12.43395 -12.31706 -12.10374 -11.93242 -11.78997 -11.71938 -11.53235 -11.06506 -10.93501 -10.84002 -10.26496 -10.09039 -9.23909 -9.10584 -8.00700 -5.35960 0.57012 1.23556 1.29556 1.48779 1.50238 1.57718 1.68217 2.27686 2.43130 3.04722 3.07919 3.13109 3.31769 3.34339 3.73970 3.83572 3.92227 3.97713 4.01362 4.08144 4.16350 4.31640 4.32660 4.44846 4.50372 4.57666 4.60358 4.62163 4.63165 4.70419 4.84476 4.93039 4.94832 4.96814 5.01410 5.05640 5.06016 5.10666 5.14031 5.33676 5.37098 5.40040 5.43972 5.66526 5.77629 5.98745 6.17102 6.57426 6.80656 7.28447 7.46119 7.49195 8.34012 9.16045 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.002061 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.771986 B =13581.938903 C =14816.707608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.148 4.148 4 N -0.538 5.538 5 C 0.019 3.981 6 C 0.034 3.966 7 C 0.515 3.485 8 O -0.562 6.562 9 N -0.718 5.718 10 C 0.222 3.778 11 C -0.048 4.048 12 C -0.013 4.013 13 N -0.269 5.269 14 C 0.105 3.895 15 C 0.165 3.835 16 N -0.628 5.628 17 C -0.237 4.237 18 H 0.091 0.909 19 C -0.057 4.057 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.126 3.874 26 N -0.108 5.108 27 N -0.281 5.281 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.411 0.589 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.207 0.793 44 H 0.138 0.862 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.253 0.747 48 H 0.076 0.924 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.752 -5.538 -14.804 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.206 4.206 4 N -0.264 5.264 5 C -0.129 4.129 6 C -0.096 4.096 7 C 0.302 3.698 8 O -0.440 6.440 9 N -0.371 5.371 10 C 0.097 3.903 11 C -0.187 4.187 12 C -0.167 4.167 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.039 3.961 16 N -0.355 5.355 17 C -0.365 4.365 18 H 0.109 0.891 19 C -0.251 4.251 20 N -0.596 5.596 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.192 1.192 25 C 0.000 4.000 26 N -0.087 5.087 27 N -0.148 5.148 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.246 0.754 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.224 0.776 44 H 0.155 0.845 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.469 -6.452 -14.141 22.646 hybrid contribution 0.789 1.342 0.133 1.562 sum -15.680 -5.111 -14.008 21.638 Atomic orbital electron populations 1.21897 0.93578 1.02266 1.02507 1.21748 0.96421 0.95286 0.89882 1.21936 1.01300 0.94723 1.02602 1.61693 1.05954 1.18402 1.40337 1.22528 1.01147 0.88231 1.00966 1.22090 0.89999 1.04283 0.93261 1.20944 0.81579 0.76982 0.90280 1.90669 1.53899 1.50218 1.49173 1.45952 1.07234 1.67754 1.16173 1.19197 0.83768 1.01249 0.86135 1.21927 0.97446 0.92432 1.06946 1.23832 0.83371 1.03367 1.06087 1.47717 1.08373 1.12290 1.37718 1.24692 0.83347 0.92119 0.99612 1.22617 0.93149 0.84670 0.95707 1.45909 1.43574 1.35509 1.10495 1.19334 1.14120 1.05190 0.97864 0.89093 1.25604 1.01245 1.02257 0.95967 1.69913 1.42186 1.43665 1.03849 0.85072 0.78610 0.78863 0.76727 1.21288 1.22172 1.19185 1.23019 0.99256 0.86630 0.91129 1.78283 1.15738 0.98819 1.15868 1.75007 0.95873 1.24987 1.18906 0.92708 0.90661 0.92311 0.93374 0.92032 0.90651 0.92718 0.91780 0.90353 0.95332 0.85728 0.90168 0.75388 0.88889 0.90440 0.77635 0.84457 0.93491 0.91847 0.93803 0.90593 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.84 71.98 0.64 -1.07 16 2 C 0.07 0.97 2.68 44.92 0.12 1.09 16 3 C -0.15 -1.71 8.99 71.98 0.65 -1.06 16 4 N -0.54 -9.57 4.37 -901.64 -3.94 -13.50 16 5 C 0.02 0.34 8.84 127.69 1.13 1.47 16 6 C 0.03 0.54 5.26 85.56 0.45 0.99 16 7 C 0.52 11.08 7.55 87.65 0.66 11.75 16 8 O -0.56 -16.47 14.32 -3.04 -0.04 -16.52 16 9 N -0.72 -13.80 5.55 -466.79 -2.59 -16.39 16 10 C 0.22 4.91 6.23 85.63 0.53 5.45 16 11 C -0.05 -1.25 6.61 41.60 0.28 -0.98 16 12 C -0.01 -0.35 10.72 83.49 0.89 0.54 16 13 N -0.27 -8.17 3.54 -332.05 -1.18 -9.34 16 14 C 0.10 3.41 5.14 46.74 0.24 3.65 16 15 C 0.17 6.62 6.90 86.44 0.60 7.22 16 16 N -0.63 -28.11 3.70 -716.72 -2.65 -30.76 16 17 C -0.24 -11.96 10.70 84.03 0.90 -11.06 16 18 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.06 -2.95 5.50 84.86 0.47 -2.48 16 20 N -0.95 -52.12 11.39 21.65 0.25 -51.87 16 21 Si 0.98 42.20 29.55 68.60 2.03 44.22 16 22 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 C 0.13 4.33 8.74 86.48 0.76 5.09 16 26 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 27 N -0.28 -8.77 12.41 -48.60 -0.60 -9.38 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.68 6.26 -2.39 -0.01 0.66 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.64 6.20 -2.39 -0.01 0.62 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.50 5.89 -2.39 -0.01 1.48 16 36 H 0.08 1.26 6.01 -2.39 -0.01 1.25 16 37 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.13 1.53 5.83 -2.39 -0.01 1.51 16 39 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 40 H 0.41 6.51 8.46 -92.70 -0.78 5.73 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.21 4.77 6.74 -2.91 -0.02 4.75 16 44 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 45 H 0.05 1.82 6.31 -2.39 -0.02 1.81 16 46 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 47 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 48 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -65.32 394.70 0.25 -65.07 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.19 Total: 20.96 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 8.31 Total: 20.58 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -10.23 Total: -134.32 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.04 Total: -16.52 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -65.32 0.25 -65.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107238755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.908 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds