Wall clock time and date at job start Tue Mar 31 2020 19:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.35244 * 126.07428 * 2 1 4 4 C 1.40401 * 107.87194 * 180.17975 * 3 2 1 5 5 N 1.40188 * 125.97527 * 179.82931 * 4 3 2 6 6 C 1.34778 * 119.99972 * 359.71129 * 5 4 3 7 7 O 1.21588 * 119.99853 * 5.22000 * 6 5 4 8 8 N 1.34777 * 119.99810 * 185.21850 * 6 5 4 9 9 C 1.48561 * 119.04698 * 354.67638 * 8 6 5 10 10 C 1.56092 * 104.97376 * 124.95325 * 9 8 6 11 11 N 1.47682 * 107.06043 * 128.69119 * 10 9 8 12 12 C 1.48844 * 117.31148 * 300.41318 * 11 10 9 13 13 C 1.57050 * 105.15627 * 302.67456 * 12 11 10 14 14 N 1.48847 * 105.13749 * 130.96811 * 13 12 11 15 15 C 1.47677 * 117.32682 * 302.64784 * 14 13 12 16 16 C 1.48553 * 119.04068 * 174.95118 * 8 6 5 17 17 N 1.31211 * 108.05133 * 359.56169 * 4 3 2 18 18 N 1.34974 * 126.07216 * 179.70403 * 2 1 3 19 19 C 1.46503 * 125.97281 * 359.97438 * 18 2 1 20 20 C 1.50692 * 109.47159 * 270.00012 * 19 18 2 21 21 H 1.07998 * 120.00322 * 0.02562 * 20 19 18 22 22 C 1.37886 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31503 * 120.00021 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99399 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47227 * 89.99809 * 24 22 20 26 26 H 1.48501 * 109.46987 * 209.99611 * 24 22 20 27 27 H 1.48498 * 109.47531 * 329.99640 * 24 22 20 28 28 H 1.09009 * 109.47294 * 270.29986 * 1 2 3 29 29 H 1.09001 * 109.47359 * 30.29349 * 1 2 3 30 30 H 1.09002 * 109.47516 * 150.30308 * 1 2 3 31 31 H 1.07999 * 126.06835 * 0.02562 * 3 2 1 32 32 H 0.97007 * 120.00316 * 179.71786 * 5 4 3 33 33 H 1.08996 * 110.29059 * 243.90779 * 9 8 6 34 34 H 1.09004 * 110.29046 * 6.06902 * 9 8 6 35 35 H 1.09001 * 109.93543 * 9.32851 * 10 9 8 36 36 H 1.09000 * 110.06933 * 248.12924 * 10 9 8 37 37 H 1.00908 * 110.99811 * 171.34744 * 11 10 9 38 38 H 1.08999 * 110.30287 * 183.76571 * 12 11 10 39 39 H 1.09005 * 110.42402 * 61.64510 * 12 11 10 40 40 H 1.08991 * 110.30294 * 12.06416 * 13 12 11 41 41 H 1.08999 * 110.43079 * 249.93720 * 13 12 11 42 42 H 1.00902 * 110.99967 * 71.73173 * 14 13 12 43 43 H 1.08997 * 109.92298 * 180.96669 * 15 14 13 44 44 H 1.08997 * 109.92002 * 59.78339 * 15 14 13 45 45 H 1.09006 * 110.29335 * 243.87012 * 16 8 6 46 46 H 1.08998 * 110.29923 * 6.04166 * 16 8 6 47 47 H 1.08999 * 109.46967 * 30.00169 * 19 18 2 48 48 H 1.09004 * 109.46591 * 149.99954 * 19 18 2 49 49 H 0.97007 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0042 5 7 4.7737 1.4750 -0.0089 6 6 4.6369 2.8158 -0.0157 7 8 3.5321 3.3147 0.0782 8 7 5.7249 3.6036 -0.1264 9 6 7.0723 2.9778 -0.1195 10 6 7.7555 3.4770 -1.4312 11 7 9.0725 4.0269 -1.0515 12 6 9.0868 5.1620 -0.0888 13 6 8.2092 6.2792 -0.7582 14 7 7.2614 6.7169 0.3029 15 6 6.3939 5.6845 0.9048 16 6 5.5421 5.0730 -0.2455 17 7 3.6336 -0.6575 0.0029 18 7 2.3016 -1.0909 0.0056 19 6 1.8500 -2.4846 0.0134 20 6 1.6957 -2.9547 1.4367 21 1 1.9119 -2.2826 2.2539 22 6 1.2773 -4.2428 1.6959 23 7 1.1422 -4.6529 2.9380 24 14 0.9027 -5.4051 0.2824 25 1 2.1351 -6.1452 -0.0900 26 1 -0.1468 -6.3695 0.6994 27 1 0.4218 -4.6249 -0.8860 28 1 -0.3634 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3634 -0.8927 -0.5091 31 1 1.9721 2.1211 0.0004 32 1 5.6587 1.0778 -0.0075 33 1 7.6373 3.3066 0.7526 34 1 6.9845 1.8913 -0.1272 35 1 7.1478 4.2547 -1.8940 36 1 7.8859 2.6462 -2.1246 37 1 9.6250 4.2389 -1.8688 38 1 10.1058 5.5196 0.0591 39 1 8.6512 4.8588 0.8633 40 1 7.6627 5.8720 -1.6088 41 1 8.8335 7.1144 -1.0755 42 1 7.7373 7.2497 1.0154 43 1 5.7404 6.1371 1.6505 44 1 7.0050 4.9091 1.3668 45 1 5.9060 5.4221 -1.2119 46 1 4.4917 5.3350 -0.1185 47 1 0.8912 -2.5587 -0.4998 48 1 2.5845 -3.1073 -0.4974 49 1 0.8482 -5.5592 3.1202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119632830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:29 Heat of formation + Delta-G solvation = 111.716030 kcal Electronic energy + Delta-G solvation = -29663.733488 eV Core-core repulsion = 25664.824059 eV Total energy + Delta-G solvation = -3998.909429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93945 -40.04938 -38.40343 -35.25127 -35.12975 -34.63616 -33.25128 -31.53429 -31.08221 -29.46114 -29.03745 -27.12947 -26.37854 -25.86804 -25.23615 -22.79724 -21.87882 -21.05152 -20.46785 -19.75994 -19.12613 -17.87790 -17.39006 -17.09980 -17.04679 -16.11816 -15.85635 -15.45140 -15.33529 -14.83063 -14.49358 -14.38719 -13.91506 -13.84321 -13.70240 -13.52525 -13.17264 -13.12749 -12.80549 -12.63906 -12.55153 -12.36603 -12.23754 -12.03169 -11.83827 -11.61527 -11.53212 -11.41975 -11.36438 -11.17681 -10.78699 -10.55880 -10.01636 -9.94160 -9.66794 -9.55248 -9.40858 -8.84007 -8.76914 -8.25724 -7.94655 -7.40401 -6.24787 -4.27552 2.25476 2.59983 3.05768 3.15798 3.19240 3.22518 3.27307 3.43997 3.75845 3.80424 4.00762 4.22631 4.41383 4.44073 4.57355 4.62197 4.63728 4.68942 4.84048 5.03797 5.13124 5.19045 5.26262 5.31834 5.36688 5.43470 5.61131 5.65291 5.67658 5.74999 5.85372 5.97431 6.07144 6.24916 6.39222 6.46450 6.50064 6.54410 6.62824 6.67054 6.80020 6.85656 6.94290 6.95526 7.30881 7.48721 7.83243 7.89967 8.33522 8.56077 8.63019 8.81250 9.30531 10.87799 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.002323 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.461910 B =12051.028393 C =12611.454270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 C -0.285 4.285 4 C 0.286 3.714 5 N -0.645 5.645 6 C 0.711 3.289 7 O -0.565 6.565 8 N -0.641 5.641 9 C 0.109 3.891 10 C 0.053 3.947 11 N -0.725 5.725 12 C 0.029 3.971 13 C 0.030 3.970 14 N -0.726 5.726 15 C 0.053 3.947 16 C 0.134 3.866 17 N -0.322 5.322 18 N -0.319 5.319 19 C 0.232 3.768 20 C -0.540 4.540 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.887 5.887 24 Si 0.874 3.126 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.404 0.596 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.347 0.653 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.346 0.654 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.050 0.950 48 H 0.045 0.955 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 21.473 -9.072 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.316 4.316 4 C 0.032 3.968 5 N -0.298 5.298 6 C 0.412 3.588 7 O -0.440 6.440 8 N -0.381 5.381 9 C -0.014 4.014 10 C -0.076 4.076 11 N -0.359 5.359 12 C -0.101 4.101 13 C -0.100 4.100 14 N -0.359 5.359 15 C -0.076 4.076 16 C 0.012 3.988 17 N -0.153 5.153 18 N -0.101 5.101 19 C 0.113 3.887 20 C -0.578 4.578 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.524 5.524 24 Si 0.700 3.300 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.179 0.821 32 H 0.242 0.758 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.166 0.834 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.165 0.835 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.730 20.210 -8.853 25.987 hybrid contribution 0.435 -0.138 -0.483 0.664 sum 14.165 20.072 -9.336 26.281 Atomic orbital electron populations 1.20346 0.87848 1.02649 1.03435 1.21045 0.94867 0.86985 1.00750 1.21232 0.89663 0.99811 1.20918 1.18688 0.86738 0.89225 1.02156 1.41709 1.07493 1.03900 1.76675 1.15697 0.84694 0.80529 0.77864 1.90857 1.23758 1.73233 1.56175 1.48554 1.04522 1.06841 1.78191 1.22798 0.82284 0.97829 0.98463 1.23092 0.88779 0.99193 0.96503 1.58866 1.17213 1.39471 1.20318 1.24059 1.00572 0.89105 0.96316 1.24049 0.93114 0.97924 0.94939 1.58868 1.29198 1.29527 1.18301 1.23031 0.94900 0.93342 0.96360 1.22513 1.02278 0.75895 0.98076 1.77243 0.99413 1.08467 1.30135 1.48478 1.01176 1.06952 1.53473 1.19980 0.95244 0.73800 0.99653 1.21185 1.47201 0.99012 0.90385 0.90121 1.24812 0.94511 0.97485 0.95765 1.69874 1.45794 1.18289 1.18445 0.86888 0.78957 0.81492 0.82650 1.19659 1.20566 1.18885 0.90104 0.90685 0.91166 0.82103 0.75756 0.89796 0.89405 0.93154 0.89537 0.83425 0.90165 0.90124 0.90176 0.90203 0.83527 0.89554 0.93578 0.90577 0.87613 0.93262 0.93726 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.00 0.36 -1.07 16 2 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 3 C -0.29 -5.94 9.52 -39.83 -0.38 -6.31 16 4 C 0.29 5.89 8.11 -154.37 -1.25 4.64 16 5 N -0.65 -10.37 5.35 -15.51 -0.08 -10.45 16 6 C 0.71 10.81 8.22 -86.92 -0.71 10.10 16 7 O -0.56 -10.37 12.80 5.29 0.07 -10.30 16 8 N -0.64 -6.85 2.65 -172.46 -0.46 -7.31 16 9 C 0.11 0.91 5.90 -1.25 -0.01 0.90 16 10 C 0.05 0.36 6.30 -1.74 -0.01 0.35 16 11 N -0.73 -4.15 6.25 -107.51 -0.67 -4.82 16 12 C 0.03 0.15 6.46 -0.55 0.00 0.15 16 13 C 0.03 0.15 6.47 -0.55 0.00 0.15 16 14 N -0.73 -4.38 6.24 -107.79 -0.67 -5.05 16 15 C 0.05 0.40 6.28 -1.99 -0.01 0.39 16 16 C 0.13 1.27 5.89 -1.50 -0.01 1.26 16 17 N -0.32 -7.43 12.59 31.44 0.40 -7.03 16 18 N -0.32 -7.49 3.59 -58.33 -0.21 -7.70 16 19 C 0.23 5.65 5.06 -5.20 -0.03 5.62 16 20 C -0.54 -15.25 9.94 -34.44 -0.34 -15.59 16 21 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 24 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 28 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.15 7.07 -51.93 -0.37 0.79 16 31 H 0.16 3.29 5.93 -52.49 -0.31 2.98 16 32 H 0.40 5.41 6.15 -40.82 -0.25 5.16 16 33 H 0.08 0.68 4.97 -51.93 -0.26 0.43 16 34 H 0.09 0.73 5.47 -51.93 -0.28 0.45 16 35 H 0.05 0.37 4.28 -51.93 -0.22 0.15 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.35 1.56 8.92 -39.29 -0.35 1.21 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.51 4.49 -51.93 -0.23 0.27 16 40 H 0.08 0.50 4.47 -51.93 -0.23 0.27 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.35 1.66 8.92 -39.29 -0.35 1.31 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.36 4.27 -51.93 -0.22 0.14 16 45 H 0.08 0.67 4.98 -51.93 -0.26 0.41 16 46 H 0.11 1.21 6.94 -51.93 -0.36 0.85 16 47 H 0.05 1.12 6.10 -51.93 -0.32 0.80 16 48 H 0.04 1.08 7.57 -51.93 -0.39 0.68 16 49 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -33.84 368.06 -9.58 -43.42 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.54 Total: 9.72 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.06 Total: 4.09 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -0.93 Total: -68.09 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.84 -9.58 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119632830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.139 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds