Wall clock time and date at job start Tue Mar 31 2020 19:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.35244 * 126.07428 * 2 1 4 4 C 1.40401 * 107.87194 * 180.17975 * 3 2 1 5 5 N 1.40188 * 125.97527 * 179.82931 * 4 3 2 6 6 C 1.34778 * 119.99972 * 359.71129 * 5 4 3 7 7 O 1.21588 * 119.99853 * 5.22000 * 6 5 4 8 8 N 1.34777 * 119.99810 * 185.21850 * 6 5 4 9 9 C 1.48561 * 119.04698 * 354.67638 * 8 6 5 10 10 C 1.56092 * 104.97376 * 124.95325 * 9 8 6 11 11 N 1.47682 * 107.06043 * 128.69119 * 10 9 8 12 12 C 1.48844 * 117.31148 * 300.41318 * 11 10 9 13 13 C 1.57050 * 105.15627 * 302.67456 * 12 11 10 14 14 N 1.48847 * 105.13749 * 130.96811 * 13 12 11 15 15 C 1.47677 * 117.32682 * 302.64784 * 14 13 12 16 16 C 1.48553 * 119.04068 * 174.95118 * 8 6 5 17 17 N 1.31211 * 108.05133 * 359.56169 * 4 3 2 18 18 N 1.34974 * 126.07216 * 179.70403 * 2 1 3 19 19 C 1.46503 * 125.97281 * 359.97438 * 18 2 1 20 20 C 1.50692 * 109.47159 * 270.00012 * 19 18 2 21 21 H 1.07998 * 120.00322 * 0.02562 * 20 19 18 22 22 C 1.37886 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31503 * 120.00021 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99399 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47227 * 89.99809 * 24 22 20 26 26 H 1.48501 * 109.46987 * 209.99611 * 24 22 20 27 27 H 1.48498 * 109.47531 * 329.99640 * 24 22 20 28 28 H 1.09009 * 109.47294 * 270.29986 * 1 2 3 29 29 H 1.09001 * 109.47359 * 30.29349 * 1 2 3 30 30 H 1.09002 * 109.47516 * 150.30308 * 1 2 3 31 31 H 1.07999 * 126.06835 * 0.02562 * 3 2 1 32 32 H 0.97007 * 120.00316 * 179.71786 * 5 4 3 33 33 H 1.08996 * 110.29059 * 243.90779 * 9 8 6 34 34 H 1.09004 * 110.29046 * 6.06902 * 9 8 6 35 35 H 1.09001 * 109.93543 * 9.32851 * 10 9 8 36 36 H 1.09000 * 110.06933 * 248.12924 * 10 9 8 37 37 H 1.00908 * 110.99811 * 171.34744 * 11 10 9 38 38 H 1.08999 * 110.30287 * 183.76571 * 12 11 10 39 39 H 1.09005 * 110.42402 * 61.64510 * 12 11 10 40 40 H 1.08991 * 110.30294 * 12.06416 * 13 12 11 41 41 H 1.08999 * 110.43079 * 249.93720 * 13 12 11 42 42 H 1.00902 * 110.99967 * 71.73173 * 14 13 12 43 43 H 1.08997 * 109.92298 * 180.96669 * 15 14 13 44 44 H 1.08997 * 109.92002 * 59.78339 * 15 14 13 45 45 H 1.09006 * 110.29335 * 243.87012 * 16 8 6 46 46 H 1.08998 * 110.29923 * 6.04166 * 16 8 6 47 47 H 1.08999 * 109.46967 * 30.00169 * 19 18 2 48 48 H 1.09004 * 109.46591 * 149.99954 * 19 18 2 49 49 H 0.97007 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0042 5 7 4.7737 1.4750 -0.0089 6 6 4.6369 2.8158 -0.0157 7 8 3.5321 3.3147 0.0782 8 7 5.7249 3.6036 -0.1264 9 6 7.0723 2.9778 -0.1195 10 6 7.7555 3.4770 -1.4312 11 7 9.0725 4.0269 -1.0515 12 6 9.0868 5.1620 -0.0888 13 6 8.2092 6.2792 -0.7582 14 7 7.2614 6.7169 0.3029 15 6 6.3939 5.6845 0.9048 16 6 5.5421 5.0730 -0.2455 17 7 3.6336 -0.6575 0.0029 18 7 2.3016 -1.0909 0.0056 19 6 1.8500 -2.4846 0.0134 20 6 1.6957 -2.9547 1.4367 21 1 1.9119 -2.2826 2.2539 22 6 1.2773 -4.2428 1.6959 23 7 1.1422 -4.6529 2.9380 24 14 0.9027 -5.4051 0.2824 25 1 2.1351 -6.1452 -0.0900 26 1 -0.1468 -6.3695 0.6994 27 1 0.4218 -4.6249 -0.8860 28 1 -0.3634 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3634 -0.8927 -0.5091 31 1 1.9721 2.1211 0.0004 32 1 5.6587 1.0778 -0.0075 33 1 7.6373 3.3066 0.7526 34 1 6.9845 1.8913 -0.1272 35 1 7.1478 4.2547 -1.8940 36 1 7.8859 2.6462 -2.1246 37 1 9.6250 4.2389 -1.8688 38 1 10.1058 5.5196 0.0591 39 1 8.6512 4.8588 0.8633 40 1 7.6627 5.8720 -1.6088 41 1 8.8335 7.1144 -1.0755 42 1 7.7373 7.2497 1.0154 43 1 5.7404 6.1371 1.6505 44 1 7.0050 4.9091 1.3668 45 1 5.9060 5.4221 -1.2119 46 1 4.4917 5.3350 -0.1185 47 1 0.8912 -2.5587 -0.4998 48 1 2.5845 -3.1073 -0.4974 49 1 0.8482 -5.5592 3.1202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119632830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:28 Heat of formation + Delta-G solvation = 84.960088 kcal Electronic energy + Delta-G solvation = -29664.893713 eV Core-core repulsion = 25664.824059 eV Total energy + Delta-G solvation = -4000.069654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.39802 -41.29640 -39.19535 -36.47807 -36.06478 -35.47346 -35.12949 -33.17831 -32.79479 -30.24234 -29.74578 -28.85861 -27.88564 -26.67171 -25.83769 -24.56911 -23.07473 -21.84258 -21.39511 -21.20605 -20.33305 -19.22982 -19.04907 -18.23481 -17.66220 -17.51699 -16.95970 -16.67796 -16.39331 -16.22173 -16.02072 -15.50628 -15.02344 -14.92927 -14.61233 -14.47118 -14.38320 -14.07498 -13.98134 -13.87958 -13.73509 -13.59426 -13.42507 -13.24739 -13.19543 -12.84386 -12.63336 -12.56503 -12.27015 -12.20126 -12.05981 -11.83446 -11.82360 -11.58536 -11.44363 -11.07501 -10.89434 -10.02894 -9.72371 -9.55735 -9.03396 -8.73466 -8.39933 -6.50989 0.95378 1.06825 1.35865 1.37974 1.47635 1.62032 1.90276 2.27115 2.33755 2.63000 2.92594 2.97051 3.29927 3.74001 3.79207 3.87762 3.96601 3.99200 4.08884 4.11412 4.17495 4.19614 4.39283 4.49932 4.51778 4.61436 4.64256 4.74541 4.80072 4.81514 4.84659 4.88937 4.96041 5.00735 5.03113 5.12088 5.13130 5.18817 5.23886 5.38787 5.64923 5.88655 5.97902 6.01335 6.17600 6.37857 6.44694 6.51630 6.53865 6.55967 7.03227 7.12807 7.33681 8.76839 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.002323 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.461910 B =12051.028393 C =12611.454270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.090 3.910 3 C -0.297 4.297 4 C 0.293 3.707 5 N -0.638 5.638 6 C 0.707 3.293 7 O -0.599 6.599 8 N -0.624 5.624 9 C 0.106 3.894 10 C 0.061 3.939 11 N -0.727 5.727 12 C 0.034 3.966 13 C 0.034 3.966 14 N -0.727 5.727 15 C 0.062 3.938 16 C 0.134 3.866 17 N -0.357 5.357 18 N -0.343 5.343 19 C 0.242 3.758 20 C -0.550 4.550 21 H 0.022 0.978 22 C 0.021 3.979 23 N -0.938 5.938 24 Si 0.952 3.048 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.233 1.233 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.165 0.835 32 H 0.416 0.584 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.357 0.643 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.356 0.644 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.049 0.951 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.203 22.199 -11.296 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.328 4.328 4 C 0.037 3.963 5 N -0.293 5.293 6 C 0.408 3.592 7 O -0.477 6.477 8 N -0.363 5.363 9 C -0.016 4.016 10 C -0.068 4.068 11 N -0.361 5.361 12 C -0.096 4.096 13 C -0.095 4.095 14 N -0.362 5.362 15 C -0.067 4.067 16 C 0.013 3.987 17 N -0.188 5.188 18 N -0.126 5.126 19 C 0.122 3.878 20 C -0.588 4.588 21 H 0.041 0.959 22 C -0.179 4.179 23 N -0.576 5.576 24 Si 0.773 3.227 25 H -0.190 1.190 26 H -0.199 1.199 27 H -0.156 1.156 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.182 0.818 32 H 0.257 0.743 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.177 0.823 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.176 0.824 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.067 0.933 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.683 21.002 -11.088 27.921 hybrid contribution 0.282 -0.177 0.309 0.454 sum 14.965 20.825 -10.779 27.818 Atomic orbital electron populations 1.20501 0.85146 1.04715 1.03791 1.21736 0.96688 0.86337 0.99186 1.21397 0.89981 0.99933 1.21451 1.18985 0.88140 0.88981 1.00167 1.41726 1.06944 1.04012 1.76583 1.15908 0.85318 0.80270 0.77722 1.90824 1.25468 1.73658 1.57730 1.48629 1.04285 1.06973 1.76444 1.22997 0.80941 0.97771 0.99897 1.22961 0.89179 0.99317 0.95343 1.58836 1.16502 1.39889 1.20921 1.24035 1.01254 0.88750 0.95555 1.24045 0.92844 0.98444 0.94192 1.58821 1.29643 1.28959 1.18745 1.22850 0.94860 0.93605 0.95410 1.22595 1.01620 0.74971 0.99521 1.77155 0.99792 1.09676 1.32157 1.48419 1.01757 1.07059 1.55318 1.19783 0.96445 0.74611 0.96979 1.21254 1.47674 0.98720 0.91170 0.95938 1.25848 0.93731 0.99293 0.99032 1.70036 1.46990 1.19191 1.21425 0.85664 0.79041 0.78741 0.79265 1.19026 1.19942 1.15608 0.90454 0.87406 0.90298 0.81774 0.74329 0.89109 0.89429 0.93516 0.89018 0.82304 0.88788 0.91213 0.91109 0.88717 0.82403 0.89773 0.93682 0.89517 0.89680 0.90762 0.93335 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.74 10.11 71.23 0.72 -2.02 16 2 C 0.09 3.81 6.92 41.38 0.29 4.10 16 3 C -0.30 -12.46 9.52 22.11 0.21 -12.25 16 4 C 0.29 12.21 8.11 133.31 1.08 13.29 16 5 N -0.64 -20.61 5.35 -321.24 -1.72 -22.32 16 6 C 0.71 21.53 8.22 179.05 1.47 23.00 16 7 O -0.60 -22.28 12.80 -3.99 -0.05 -22.33 16 8 N -0.62 -13.01 2.65 -817.79 -2.17 -15.18 16 9 C 0.11 1.64 5.90 87.05 0.51 2.15 16 10 C 0.06 0.73 6.30 87.23 0.55 1.28 16 11 N -0.73 -6.71 6.25 -494.05 -3.09 -9.80 16 12 C 0.03 0.26 6.46 87.35 0.56 0.83 16 13 C 0.03 0.27 6.47 87.35 0.57 0.84 16 14 N -0.73 -7.45 6.24 -494.93 -3.09 -10.54 16 15 C 0.06 0.87 6.28 87.07 0.55 1.42 16 16 C 0.13 2.46 5.89 86.90 0.51 2.97 16 17 N -0.36 -16.75 12.59 -54.44 -0.69 -17.44 16 18 N -0.34 -16.27 3.59 -338.45 -1.22 -17.49 16 19 C 0.24 11.65 5.06 85.63 0.43 12.08 16 20 C -0.55 -31.95 9.94 25.60 0.25 -31.69 16 21 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 22 C 0.02 1.16 5.47 84.66 0.46 1.63 16 23 N -0.94 -57.56 13.96 21.45 0.30 -57.27 16 24 Si 0.95 41.06 27.47 68.60 1.88 42.94 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.23 -8.85 6.54 99.48 0.65 -8.20 16 28 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.08 2.44 7.07 -2.39 -0.02 2.42 16 31 H 0.16 6.78 5.93 -2.91 -0.02 6.76 16 32 H 0.42 11.08 6.15 -92.70 -0.57 10.51 16 33 H 0.09 1.35 4.97 -2.39 -0.01 1.33 16 34 H 0.09 1.38 5.47 -2.38 -0.01 1.36 16 35 H 0.05 0.61 4.28 -2.39 -0.01 0.60 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.36 2.33 8.92 -89.69 -0.80 1.53 16 38 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 39 H 0.07 0.73 4.49 -2.38 -0.01 0.72 16 40 H 0.07 0.73 4.47 -2.39 -0.01 0.72 16 41 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.36 2.67 8.92 -89.69 -0.80 1.87 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.05 0.66 4.27 -2.39 -0.01 0.65 16 45 H 0.09 1.43 4.98 -2.38 -0.01 1.42 16 46 H 0.08 1.97 6.94 -2.39 -0.02 1.95 16 47 H 0.07 3.19 6.10 -2.39 -0.01 3.18 16 48 H 0.05 2.29 7.57 -2.38 -0.02 2.27 16 49 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -76.40 368.06 -2.84 -79.24 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -1.18 Total: 32.55 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 8.17 Total: 17.63 kcal Atomic # 7 Polarization: -138.36 SS G_CDS: -11.67 Total: -150.03 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.88 Total: 42.94 kcal Total: -76.40 -2.84 -79.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119632830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.203 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds