Wall clock time and date at job start Tue Mar 31 2020 20:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46926 * 2 1 4 4 H 1.08994 * 109.47377 * 305.34704 * 3 2 1 5 5 C 1.50699 * 109.47146 * 185.34463 * 3 2 1 6 6 O 1.21279 * 119.99968 * 259.44540 * 5 3 2 7 7 N 1.34773 * 120.00050 * 79.44851 * 5 3 2 8 8 C 1.46500 * 120.00231 * 180.02562 * 7 5 3 9 9 H 1.09000 * 110.88428 * 31.11425 * 8 7 5 10 10 C 1.55127 * 111.19059 * 267.18508 * 8 7 5 11 11 N 1.47424 * 104.72146 * 279.19073 * 10 8 7 12 12 C 1.36940 * 125.64961 * 155.81763 * 11 10 8 13 13 H 1.07996 * 120.00336 * 192.40647 * 12 11 10 14 14 C 1.38816 * 119.99571 * 12.41082 * 12 11 10 15 15 N 1.31611 * 120.00075 * 29.58107 * 14 12 11 16 16 Si 1.86798 * 119.99446 * 209.58213 * 14 12 11 17 17 H 1.48504 * 109.47181 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47532 * 299.99822 * 16 14 12 19 19 H 1.48498 * 109.47331 * 60.00037 * 16 14 12 20 20 C 1.47022 * 108.70497 * 335.55304 * 11 10 8 21 21 C 1.54326 * 107.26933 * 1.28540 * 20 11 10 22 22 H 1.08992 * 110.72452 * 263.65084 * 21 20 11 23 23 N 1.46499 * 110.71715 * 140.55468 * 21 20 11 24 24 C 1.35316 * 125.87156 * 326.16883 * 23 21 20 25 25 C 1.35354 * 106.17617 * 179.90552 * 24 23 21 26 26 N 1.33773 * 106.49239 * 0.35334 * 25 24 23 27 27 N 1.28631 * 108.88783 * 359.77363 * 26 25 24 28 28 N 1.46902 * 109.46912 * 65.34507 * 3 2 1 29 29 C 1.46896 * 111.00375 * 275.82862 * 28 3 2 30 30 C 1.46899 * 111.00378 * 39.78822 * 28 3 2 31 31 H 1.09007 * 109.47314 * 280.06034 * 1 2 3 32 32 H 1.09000 * 109.47396 * 40.06430 * 1 2 3 33 33 H 1.08999 * 109.47065 * 160.06922 * 1 2 3 34 34 H 1.08995 * 109.47522 * 240.00138 * 2 1 3 35 35 H 1.08998 * 109.47221 * 120.00143 * 2 1 3 36 36 H 0.97000 * 119.99674 * 359.97438 * 7 5 3 37 37 H 1.09001 * 110.49559 * 160.35157 * 10 8 7 38 38 H 1.08998 * 110.34316 * 37.95278 * 10 8 7 39 39 H 0.97001 * 120.00564 * 6.01483 * 15 14 12 40 40 H 1.08997 * 109.88499 * 120.70104 * 20 11 10 41 41 H 1.09006 * 109.88430 * 241.72037 * 20 11 10 42 42 H 1.07998 * 126.90853 * 0.02562 * 24 23 21 43 43 H 1.07994 * 126.75277 * 180.13179 * 25 24 23 44 44 H 1.09005 * 109.47216 * 71.29284 * 29 28 3 45 45 H 1.09004 * 109.47524 * 191.29712 * 29 28 3 46 46 H 1.09000 * 109.46773 * 311.29641 * 29 28 3 47 47 H 1.08999 * 109.47139 * 52.39691 * 30 28 3 48 48 H 1.08997 * 109.47694 * 172.40648 * 30 28 3 49 49 H 1.09007 * 109.46936 * 292.40564 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6006 1.9832 -0.8382 5 6 3.5411 1.4446 -0.1323 6 8 4.2361 1.6057 0.8484 7 7 4.1113 1.2676 -1.3406 8 6 5.5707 1.2691 -1.4692 9 1 6.0408 0.8821 -0.5651 10 6 6.1023 2.6866 -1.8074 11 7 5.8969 2.8270 -3.2605 12 6 5.7679 4.0102 -3.9377 13 1 5.4231 4.0118 -4.9612 14 6 6.0803 5.2075 -3.3086 15 7 6.9965 5.2352 -2.3642 16 14 5.2001 6.7793 -3.8025 17 1 5.7119 7.9103 -2.9875 18 1 5.4478 7.0545 -5.2407 19 1 3.7414 6.6231 -3.5725 20 6 5.8599 1.4864 -3.8631 21 6 6.0198 0.4646 -2.7176 22 1 7.0591 0.1501 -2.6237 23 7 5.1472 -0.6927 -2.9300 24 6 3.9233 -0.6678 -3.5068 25 6 3.4778 -1.9459 -3.5013 26 7 4.4348 -2.6792 -2.9219 27 7 5.4104 -1.9073 -2.5949 28 7 1.6584 2.0967 1.2588 29 6 0.2906 2.6271 1.1830 30 6 1.8044 1.1774 2.3952 31 1 -0.3634 0.1795 1.0119 32 1 -0.3634 0.7865 -0.6614 33 1 -0.3633 -0.9661 -0.3503 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.5554 1.1384 -2.1249 37 1 7.1621 2.7646 -1.5648 38 1 5.5322 3.4436 -1.2688 39 1 7.5148 4.4392 -2.1677 40 1 4.9055 1.3325 -4.3665 41 1 6.6770 1.3779 -4.5764 42 1 3.4070 0.1975 -3.8953 43 1 2.5337 -2.3028 -3.8855 44 1 -0.4204 1.8009 1.1898 45 1 0.1038 3.2743 2.0400 46 1 0.1735 3.1997 0.2629 47 1 2.8070 0.7498 2.3902 48 1 1.6464 1.7222 3.3260 49 1 1.0680 0.3779 2.3127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129064446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:46 Heat of formation + Delta-G solvation = 120.123210 kcal Electronic energy + Delta-G solvation = -31592.143636 eV Core-core repulsion = 27593.598769 eV Total energy + Delta-G solvation = -3998.544866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.25593 -40.29286 -38.69727 -37.14795 -34.44904 -33.65791 -32.43816 -31.81169 -31.04968 -29.39127 -28.29321 -27.82519 -27.47458 -24.77409 -23.24112 -22.94858 -22.49145 -21.92371 -20.49393 -20.35842 -19.81225 -18.09947 -17.43886 -17.21084 -16.59847 -16.06391 -15.64922 -15.33410 -14.96712 -14.92876 -14.45353 -14.31601 -14.14862 -13.95452 -13.70853 -13.43181 -13.17309 -13.07323 -12.64212 -12.37720 -12.19605 -12.07642 -11.91735 -11.79786 -11.73425 -11.67891 -11.56484 -11.44902 -11.08516 -11.04217 -10.95004 -10.82168 -10.71190 -10.12469 -9.94669 -9.77218 -9.55765 -9.36513 -8.89176 -8.58319 -8.25428 -7.23689 -6.29492 -3.34028 1.64436 2.30663 2.61476 2.79694 3.14851 3.40341 3.45413 3.63107 3.98373 4.32554 4.43297 4.45033 4.57254 4.61130 4.66727 4.74214 4.93893 4.99710 5.07552 5.10602 5.15042 5.17681 5.22784 5.26787 5.28368 5.35402 5.46239 5.52436 5.54299 5.66576 5.72880 5.74907 5.82933 5.83637 5.93122 5.94147 6.04409 6.07262 6.16817 6.30871 6.66193 6.74984 6.79741 6.85530 6.97190 7.48818 7.63660 8.25570 8.43011 8.56756 8.76166 9.58483 10.04565 11.03530 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008448 B = 0.005395 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.477667 B = 5188.390650 C = 7361.512980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.069 3.931 4 H 0.101 0.899 5 C 0.526 3.474 6 O -0.522 6.522 7 N -0.712 5.712 8 C 0.125 3.875 9 H 0.107 0.893 10 C 0.137 3.863 11 N -0.593 5.593 12 C -0.350 4.350 13 H 0.071 0.929 14 C -0.015 4.015 15 N -0.905 5.905 16 Si 1.063 2.937 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.293 1.293 20 C 0.130 3.870 21 C 0.116 3.884 22 H 0.132 0.868 23 N -0.266 5.266 24 C -0.052 4.052 25 C -0.055 4.055 26 N -0.278 5.278 27 N -0.084 5.084 28 N -0.520 5.520 29 C 0.013 3.987 30 C 0.022 3.978 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.395 0.605 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.270 0.730 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.187 0.813 43 H 0.187 0.813 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.312 -10.314 1.941 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C -0.043 4.043 4 H 0.119 0.881 5 C 0.311 3.689 6 O -0.396 6.396 7 N -0.365 5.365 8 C 0.017 3.983 9 H 0.125 0.875 10 C 0.010 3.990 11 N -0.322 5.322 12 C -0.476 4.476 13 H 0.089 0.911 14 C -0.218 4.218 15 N -0.545 5.545 16 Si 0.892 3.108 17 H -0.209 1.209 18 H -0.219 1.219 19 H -0.220 1.220 20 C 0.003 3.997 21 C 0.013 3.987 22 H 0.150 0.850 23 N -0.060 5.060 24 C -0.203 4.203 25 C -0.213 4.213 26 N -0.144 5.144 27 N -0.063 5.063 28 N -0.243 5.243 29 C -0.135 4.135 30 C -0.125 4.125 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.230 0.770 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.204 0.796 43 H 0.204 0.796 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.599 -9.020 3.702 15.153 hybrid contribution -1.271 -1.431 -1.641 2.521 sum -12.870 -10.451 2.061 16.707 Atomic orbital electron populations 1.22046 0.94864 1.02207 1.01997 1.22134 0.96893 0.96167 1.03735 1.21733 0.92827 0.95014 0.94763 0.88131 1.20361 0.90002 0.75742 0.82762 1.90666 1.64174 1.47417 1.37336 1.45748 1.06684 1.74293 1.09782 1.22627 0.81489 0.97642 0.96510 0.87529 1.22087 0.98559 0.92167 0.86158 1.44495 1.86532 0.99844 1.01282 1.19663 1.45479 0.83115 0.99377 0.91141 1.25756 0.97630 1.00283 0.98145 1.70819 1.17781 1.31523 1.34331 0.83560 0.75895 0.75971 0.75394 1.20918 1.21896 1.21975 1.21605 1.00255 0.85609 0.92216 1.23330 0.94579 0.81938 0.98824 0.84988 1.47426 1.13266 1.08177 1.37095 1.23579 0.89186 1.01510 1.06018 1.23525 1.01794 0.90211 1.05738 1.75086 0.99270 1.26078 1.13925 1.78308 1.21147 0.87374 1.19497 1.61720 1.24332 1.36413 1.01844 1.22753 0.88212 0.99605 1.02938 1.22527 1.02166 0.94681 0.93166 0.92081 0.92120 0.92249 0.91023 0.90527 0.76954 0.93914 0.90885 0.91873 0.94371 0.93868 0.79584 0.79640 0.94172 0.91258 0.91412 0.90158 0.91570 0.95375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.18 37.16 0.30 -0.94 16 2 C -0.15 -1.56 4.86 -26.73 -0.13 -1.69 16 3 C 0.07 0.88 2.30 -68.86 -0.16 0.72 16 4 H 0.10 1.18 7.51 -51.93 -0.39 0.79 16 5 C 0.53 8.62 7.00 -10.99 -0.08 8.54 16 6 O -0.52 -10.42 14.54 5.56 0.08 -10.34 16 7 N -0.71 -10.99 4.67 -51.62 -0.24 -11.23 16 8 C 0.13 2.11 3.29 -65.66 -0.22 1.90 16 9 H 0.11 1.86 7.54 -51.93 -0.39 1.47 16 10 C 0.14 2.90 4.96 -2.41 -0.01 2.89 16 11 N -0.59 -13.02 3.33 -169.93 -0.57 -13.59 16 12 C -0.35 -8.90 10.02 -15.06 -0.15 -9.06 16 13 H 0.07 1.78 7.98 -52.49 -0.42 1.36 16 14 C -0.01 -0.40 5.05 -17.43 -0.09 -0.49 16 15 N -0.91 -25.92 12.82 55.49 0.71 -25.21 16 16 Si 1.06 24.05 30.01 -169.99 -5.10 18.94 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.13 2.25 6.85 -3.06 -0.02 2.23 16 21 C 0.12 1.76 3.85 -66.09 -0.25 1.50 16 22 H 0.13 1.88 8.14 -51.93 -0.42 1.46 16 23 N -0.27 -3.79 3.14 -52.98 -0.17 -3.96 16 24 C -0.05 -0.62 8.48 -17.04 -0.14 -0.76 16 25 C -0.05 -0.65 12.06 -17.73 -0.21 -0.86 16 26 N -0.28 -4.27 12.41 30.23 0.38 -3.89 16 27 N -0.08 -1.35 13.16 60.35 0.79 -0.55 16 28 N -0.52 -6.83 4.62 -244.59 -1.13 -7.96 16 29 C 0.01 0.13 8.84 60.06 0.53 0.66 16 30 C 0.02 0.27 7.97 60.06 0.48 0.75 16 31 H 0.06 0.48 4.99 -51.93 -0.26 0.23 16 32 H 0.06 0.46 7.49 -51.93 -0.39 0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.88 6.10 -51.93 -0.32 0.56 16 36 H 0.40 5.38 6.05 -40.82 -0.25 5.13 16 37 H 0.04 0.96 6.90 -51.93 -0.36 0.60 16 38 H 0.07 1.83 7.74 -51.93 -0.40 1.42 16 39 H 0.27 7.68 6.04 -40.82 -0.25 7.43 16 40 H 0.04 0.62 6.03 -51.93 -0.31 0.30 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.19 1.81 6.48 -52.49 -0.34 1.47 16 43 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.04 0.34 4.65 -51.93 -0.24 0.09 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.66 7.77 -51.93 -0.40 0.26 16 47 H 0.08 1.16 6.40 -51.93 -0.33 0.82 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.03 0.29 5.28 -51.92 -0.27 0.01 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -32.22 375.57 -6.81 -39.03 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.08 Total: 7.70 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.15 Total: 5.39 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.22 Total: -66.39 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.10 Total: 18.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.22 -6.81 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129064446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.157 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds