Wall clock time and date at job start Tue Mar 31 2020 20:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47350 * 2 1 4 4 H 1.09000 * 109.46585 * 56.85645 * 3 2 1 5 5 C 1.50702 * 109.47199 * 176.85600 * 3 2 1 6 6 O 1.21285 * 119.99364 * 95.02015 * 5 3 2 7 7 N 1.34771 * 119.99951 * 274.74544 * 5 3 2 8 8 C 1.46506 * 119.99413 * 179.97438 * 7 5 3 9 9 H 1.08994 * 110.88709 * 31.12093 * 8 7 5 10 10 C 1.54911 * 111.00424 * 267.19294 * 8 7 5 11 11 N 1.47419 * 104.83226 * 204.91995 * 10 8 7 12 12 C 1.36938 * 125.64666 * 204.08617 * 11 10 8 13 13 H 1.08007 * 119.99851 * 180.02562 * 12 11 10 14 14 C 1.38811 * 120.00150 * 0.05439 * 12 11 10 15 15 N 1.31612 * 120.00140 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99813 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47034 * 60.00221 * 16 14 12 18 18 H 1.48502 * 109.46724 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47420 * 299.99805 * 16 14 12 20 20 C 1.47022 * 108.70330 * 24.12919 * 11 10 8 21 21 C 1.54319 * 107.27116 * 358.94554 * 20 11 10 22 22 H 1.09002 * 110.71562 * 219.44509 * 21 20 11 23 23 N 1.46496 * 110.72623 * 96.16833 * 21 20 11 24 24 C 1.35315 * 125.86310 * 331.19232 * 23 21 20 25 25 C 1.35353 * 106.17440 * 179.90581 * 24 23 21 26 26 N 1.33775 * 106.49676 * 0.34851 * 25 24 23 27 27 N 1.28642 * 108.88465 * 359.77901 * 26 25 24 28 28 N 1.46901 * 109.47077 * 296.86280 * 3 2 1 29 29 C 1.46906 * 110.99650 * 183.92626 * 28 3 2 30 30 C 1.46898 * 111.00113 * 307.87651 * 28 3 2 31 31 H 1.09007 * 109.47093 * 305.03057 * 1 2 3 32 32 H 1.09005 * 109.47490 * 65.02822 * 1 2 3 33 33 H 1.08994 * 109.47358 * 185.03006 * 1 2 3 34 34 H 1.09005 * 109.46944 * 240.00852 * 2 1 3 35 35 H 1.08995 * 109.47118 * 120.00664 * 2 1 3 36 36 H 0.96996 * 120.00444 * 0.02562 * 7 5 3 37 37 H 1.09002 * 110.36867 * 323.76451 * 10 8 7 38 38 H 1.09000 * 110.36386 * 86.07954 * 10 8 7 39 39 H 0.96997 * 120.00394 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.88483 * 239.51715 * 20 11 10 41 41 H 1.09003 * 110.00483 * 118.42924 * 20 11 10 42 42 H 1.08002 * 126.91709 * 0.02562 * 24 23 21 43 43 H 1.08001 * 126.75424 * 180.12962 * 25 24 23 44 44 H 1.09002 * 109.47066 * 59.54827 * 29 28 3 45 45 H 1.09001 * 109.47102 * 179.54774 * 29 28 3 46 46 H 1.09002 * 109.46891 * 299.55159 * 29 28 3 47 47 H 1.09004 * 109.46943 * 59.98788 * 30 28 3 48 48 H 1.08995 * 109.47107 * 179.97438 * 30 28 3 49 49 H 1.09008 * 109.46890 * 299.99428 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6314 1.9723 0.8605 5 6 3.5451 1.4432 0.0779 6 8 4.2047 1.5162 -0.9372 7 7 4.1578 1.3682 1.2759 8 6 5.6209 1.3683 1.3515 9 1 6.0521 1.9496 0.5366 10 6 6.1767 -0.0777 1.3580 11 7 7.4856 0.0241 2.0286 12 6 8.5319 -0.8454 1.8726 13 1 9.4539 -0.6830 2.4113 14 6 8.4080 -1.9350 1.0217 15 7 7.2846 -2.1328 0.3651 16 14 9.8351 -3.1215 0.8095 17 1 10.1739 -3.7280 2.1220 18 1 9.4511 -4.1919 -0.1455 19 1 11.0145 -2.3883 0.2838 20 6 7.4812 1.2132 2.8932 21 6 6.1065 1.8948 2.7279 22 1 6.2136 2.9794 2.7099 23 7 5.1909 1.4805 3.7938 24 6 5.2190 0.2957 4.4469 25 6 4.2061 0.3355 5.3439 26 7 3.6110 1.5240 5.1923 27 7 4.2182 2.1786 4.2662 28 7 1.6133 2.1128 -1.2355 29 6 2.1637 3.4726 -1.3138 30 6 1.9866 1.3249 -2.4178 31 1 -0.3634 0.5899 0.8415 32 1 -0.3634 0.4339 -0.9316 33 1 -0.3634 -1.0236 0.0901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.6302 1.3134 2.0880 37 1 5.5134 -0.7365 1.9186 38 1 6.3002 -0.4411 0.3379 39 1 7.1978 -2.8945 -0.2292 40 1 8.2732 1.8969 2.5875 41 1 7.6264 0.9190 3.9327 42 1 5.9115 -0.5174 4.2863 43 1 3.9302 -0.4410 6.0420 44 1 3.2525 3.4256 -1.2920 45 1 1.8388 3.9432 -2.2418 46 1 1.8082 4.0578 -0.4657 47 1 1.5089 0.3464 -2.3680 48 1 1.6584 1.8437 -3.3185 49 1 3.0691 1.1999 -2.4441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129271465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:51 Heat of formation + Delta-G solvation = 118.317770 kcal Electronic energy + Delta-G solvation = -31500.396232 eV Core-core repulsion = 27501.773076 eV Total energy + Delta-G solvation = -3998.623156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.10933 -40.37159 -38.36754 -36.51977 -34.33125 -33.68357 -32.81515 -31.80346 -30.72397 -29.20787 -28.13262 -27.38174 -26.97642 -24.95195 -23.28323 -22.75632 -22.41032 -21.71362 -20.38995 -20.21539 -19.74676 -17.75838 -17.43528 -17.00731 -16.30949 -15.83770 -15.29814 -15.23609 -14.90832 -14.70256 -14.41293 -14.34847 -14.06321 -13.72399 -13.45957 -13.16633 -12.99331 -12.75431 -12.54173 -12.37514 -12.14346 -11.92881 -11.79019 -11.65411 -11.54923 -11.48738 -11.34061 -11.06099 -10.98362 -10.82436 -10.75696 -10.70081 -10.56159 -10.26525 -10.09516 -10.00758 -9.88292 -9.13176 -8.89057 -8.73524 -8.06436 -7.18149 -5.88365 -3.35199 1.83476 2.50260 2.74906 2.78135 3.27731 3.29997 3.33713 3.34841 3.94788 4.26096 4.49450 4.65645 4.77859 4.83231 4.87604 5.01679 5.02377 5.20052 5.27565 5.35425 5.37876 5.45060 5.51037 5.51767 5.57979 5.64962 5.71816 5.74641 5.78215 5.89625 5.96036 6.00414 6.02656 6.07319 6.09713 6.13634 6.21810 6.34719 6.37224 6.59896 6.87005 6.89300 6.99297 7.09618 7.34363 7.57363 7.65322 8.06342 8.38513 8.71644 8.93173 9.53952 10.11374 11.14535 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.004700 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.891291 B = 5955.542524 C = 7612.203221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.067 3.933 4 H 0.100 0.900 5 C 0.492 3.508 6 O -0.532 6.532 7 N -0.713 5.713 8 C 0.109 3.891 9 H 0.114 0.886 10 C 0.147 3.853 11 N -0.597 5.597 12 C -0.238 4.238 13 H 0.082 0.918 14 C -0.001 4.001 15 N -0.914 5.914 16 Si 0.919 3.081 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.129 3.871 21 C 0.116 3.884 22 H 0.119 0.881 23 N -0.276 5.276 24 C -0.018 4.018 25 C -0.068 4.068 26 N -0.276 5.276 27 N -0.103 5.103 28 N -0.513 5.513 29 C 0.011 3.989 30 C -0.005 4.005 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.020 0.980 38 H 0.121 0.879 39 H 0.257 0.743 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.194 0.806 43 H 0.186 0.814 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 6.229 1.845 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.045 4.045 4 H 0.118 0.882 5 C 0.277 3.723 6 O -0.408 6.408 7 N -0.364 5.364 8 C 0.001 3.999 9 H 0.132 0.868 10 C 0.021 3.979 11 N -0.325 5.325 12 C -0.365 4.365 13 H 0.100 0.900 14 C -0.198 4.198 15 N -0.561 5.561 16 Si 0.748 3.252 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.209 1.209 20 C 0.002 3.998 21 C 0.013 3.987 22 H 0.137 0.863 23 N -0.069 5.069 24 C -0.169 4.169 25 C -0.225 4.225 26 N -0.142 5.142 27 N -0.082 5.082 28 N -0.235 5.235 29 C -0.137 4.137 30 C -0.152 4.152 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.038 0.962 38 H 0.138 0.862 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.211 0.789 43 H 0.203 0.797 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.382 7.480 0.883 12.826 hybrid contribution 2.125 -1.722 0.430 2.769 sum -8.256 5.758 1.313 10.151 Atomic orbital electron populations 1.21643 0.94193 1.01153 1.02683 1.21580 0.97365 0.93108 1.03323 1.21959 0.89205 0.97826 0.95525 0.88239 1.21915 0.91485 0.75541 0.83360 1.90624 1.67000 1.49373 1.33852 1.46024 1.06980 1.74434 1.09010 1.23059 0.80212 1.02351 0.94281 0.86789 1.22380 0.84815 0.88133 1.02600 1.44383 1.12859 1.26131 1.49126 1.18967 0.92132 1.02547 1.22886 0.90012 1.24830 0.97535 0.98564 0.98831 1.69732 1.24376 1.30493 1.31482 0.86104 0.81121 0.80309 0.77631 1.20993 1.21442 1.20922 1.21651 0.90780 0.90951 0.96423 1.23207 0.89621 1.01140 0.84707 0.86325 1.47446 1.22137 1.11587 1.25780 1.23893 1.03765 0.92270 0.96981 1.23547 0.97320 0.97970 1.03620 1.75050 1.22843 1.05123 1.11226 1.78255 0.99724 1.20522 1.09721 1.62535 1.56848 1.02727 1.01435 1.22526 0.99347 0.89655 1.02213 1.22812 1.02915 0.97892 0.91625 0.92739 0.91629 0.92928 0.90610 0.91187 0.76945 0.96158 0.86159 0.93235 0.92753 0.94072 0.78934 0.79668 0.93701 0.91359 0.91850 0.91471 0.92135 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.66 37.16 0.36 -1.10 16 2 C -0.12 -1.45 4.91 -26.73 -0.13 -1.58 16 3 C 0.07 0.90 2.33 -68.86 -0.16 0.74 16 4 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.49 8.03 6.04 -10.99 -0.07 7.96 16 6 O -0.53 -10.27 11.89 5.55 0.07 -10.21 16 7 N -0.71 -11.47 5.16 -51.72 -0.27 -11.74 16 8 C 0.11 1.91 3.29 -65.78 -0.22 1.69 16 9 H 0.11 2.15 7.54 -51.93 -0.39 1.75 16 10 C 0.15 3.18 5.16 -2.53 -0.01 3.17 16 11 N -0.60 -13.13 3.39 -170.08 -0.58 -13.71 16 12 C -0.24 -5.90 10.27 -15.06 -0.15 -6.05 16 13 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 14 C 0.00 -0.02 5.49 -17.43 -0.10 -0.11 16 15 N -0.91 -24.84 10.09 55.49 0.56 -24.28 16 16 Si 0.92 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.13 2.24 6.27 -3.07 -0.02 2.22 16 21 C 0.12 1.80 3.97 -66.10 -0.26 1.53 16 22 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 23 N -0.28 -4.26 2.38 -52.98 -0.13 -4.39 16 24 C -0.02 -0.27 9.33 -17.04 -0.16 -0.43 16 25 C -0.07 -0.95 12.05 -17.73 -0.21 -1.17 16 26 N -0.28 -4.44 12.41 30.24 0.38 -4.06 16 27 N -0.10 -1.67 12.28 60.35 0.74 -0.92 16 28 N -0.51 -6.67 4.54 -244.57 -1.11 -7.78 16 29 C 0.01 0.14 9.20 60.07 0.55 0.69 16 30 C 0.00 -0.07 8.72 60.06 0.52 0.46 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.03 6.13 -51.93 -0.32 0.71 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 6.16 6.80 -40.82 -0.28 5.89 16 37 H 0.02 0.47 7.58 -51.93 -0.39 0.08 16 38 H 0.12 3.17 5.87 -51.93 -0.31 2.86 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.70 7.18 -51.93 -0.37 0.33 16 42 H 0.19 3.07 7.71 -52.49 -0.40 2.67 16 43 H 0.19 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.04 0.66 5.96 -51.93 -0.31 0.35 16 45 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.83 5.95 -51.93 -0.31 0.53 16 48 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 49 H 0.07 1.18 5.32 -51.92 -0.28 0.91 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -28.42 380.89 -7.21 -35.63 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -7.53 Total: 12.10 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -0.06 Total: 8.03 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.40 Total: -66.89 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.42 -7.21 -35.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129271465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.944 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds