Wall clock time and date at job start Tue Mar 31 2020 20:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47350 * 2 1 4 4 H 1.09000 * 109.46585 * 56.85645 * 3 2 1 5 5 C 1.50702 * 109.47199 * 176.85600 * 3 2 1 6 6 O 1.21285 * 119.99364 * 95.02015 * 5 3 2 7 7 N 1.34771 * 119.99951 * 274.74544 * 5 3 2 8 8 C 1.46506 * 119.99413 * 179.97438 * 7 5 3 9 9 H 1.08994 * 110.88709 * 31.12093 * 8 7 5 10 10 C 1.54911 * 111.00424 * 267.19294 * 8 7 5 11 11 N 1.47419 * 104.83226 * 204.91995 * 10 8 7 12 12 C 1.36938 * 125.64666 * 204.08617 * 11 10 8 13 13 H 1.08007 * 119.99851 * 180.02562 * 12 11 10 14 14 C 1.38811 * 120.00150 * 0.05439 * 12 11 10 15 15 N 1.31612 * 120.00140 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99813 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47034 * 60.00221 * 16 14 12 18 18 H 1.48502 * 109.46724 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47420 * 299.99805 * 16 14 12 20 20 C 1.47022 * 108.70330 * 24.12919 * 11 10 8 21 21 C 1.54319 * 107.27116 * 358.94554 * 20 11 10 22 22 H 1.09002 * 110.71562 * 219.44509 * 21 20 11 23 23 N 1.46496 * 110.72623 * 96.16833 * 21 20 11 24 24 C 1.35315 * 125.86310 * 331.19232 * 23 21 20 25 25 C 1.35353 * 106.17440 * 179.90581 * 24 23 21 26 26 N 1.33775 * 106.49676 * 0.34851 * 25 24 23 27 27 N 1.28642 * 108.88465 * 359.77901 * 26 25 24 28 28 N 1.46901 * 109.47077 * 296.86280 * 3 2 1 29 29 C 1.46906 * 110.99650 * 183.92626 * 28 3 2 30 30 C 1.46898 * 111.00113 * 307.87651 * 28 3 2 31 31 H 1.09007 * 109.47093 * 305.03057 * 1 2 3 32 32 H 1.09005 * 109.47490 * 65.02822 * 1 2 3 33 33 H 1.08994 * 109.47358 * 185.03006 * 1 2 3 34 34 H 1.09005 * 109.46944 * 240.00852 * 2 1 3 35 35 H 1.08995 * 109.47118 * 120.00664 * 2 1 3 36 36 H 0.96996 * 120.00444 * 0.02562 * 7 5 3 37 37 H 1.09002 * 110.36867 * 323.76451 * 10 8 7 38 38 H 1.09000 * 110.36386 * 86.07954 * 10 8 7 39 39 H 0.96997 * 120.00394 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.88483 * 239.51715 * 20 11 10 41 41 H 1.09003 * 110.00483 * 118.42924 * 20 11 10 42 42 H 1.08002 * 126.91709 * 0.02562 * 24 23 21 43 43 H 1.08001 * 126.75424 * 180.12962 * 25 24 23 44 44 H 1.09002 * 109.47066 * 59.54827 * 29 28 3 45 45 H 1.09001 * 109.47102 * 179.54774 * 29 28 3 46 46 H 1.09002 * 109.46891 * 299.55159 * 29 28 3 47 47 H 1.09004 * 109.46943 * 59.98788 * 30 28 3 48 48 H 1.08995 * 109.47107 * 179.97438 * 30 28 3 49 49 H 1.09008 * 109.46890 * 299.99428 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6314 1.9723 0.8605 5 6 3.5451 1.4432 0.0779 6 8 4.2047 1.5162 -0.9372 7 7 4.1578 1.3682 1.2759 8 6 5.6209 1.3683 1.3515 9 1 6.0521 1.9496 0.5366 10 6 6.1767 -0.0777 1.3580 11 7 7.4856 0.0241 2.0286 12 6 8.5319 -0.8454 1.8726 13 1 9.4539 -0.6830 2.4113 14 6 8.4080 -1.9350 1.0217 15 7 7.2846 -2.1328 0.3651 16 14 9.8351 -3.1215 0.8095 17 1 10.1739 -3.7280 2.1220 18 1 9.4511 -4.1919 -0.1455 19 1 11.0145 -2.3883 0.2838 20 6 7.4812 1.2132 2.8932 21 6 6.1065 1.8948 2.7279 22 1 6.2136 2.9794 2.7099 23 7 5.1909 1.4805 3.7938 24 6 5.2190 0.2957 4.4469 25 6 4.2061 0.3355 5.3439 26 7 3.6110 1.5240 5.1923 27 7 4.2182 2.1786 4.2662 28 7 1.6133 2.1128 -1.2355 29 6 2.1637 3.4726 -1.3138 30 6 1.9866 1.3249 -2.4178 31 1 -0.3634 0.5899 0.8415 32 1 -0.3634 0.4339 -0.9316 33 1 -0.3634 -1.0236 0.0901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.6302 1.3134 2.0880 37 1 5.5134 -0.7365 1.9186 38 1 6.3002 -0.4411 0.3379 39 1 7.1978 -2.8945 -0.2292 40 1 8.2732 1.8969 2.5875 41 1 7.6264 0.9190 3.9327 42 1 5.9115 -0.5174 4.2863 43 1 3.9302 -0.4410 6.0420 44 1 3.2525 3.4256 -1.2920 45 1 1.8388 3.9432 -2.2418 46 1 1.8082 4.0578 -0.4657 47 1 1.5089 0.3464 -2.3680 48 1 1.6584 1.8437 -3.3185 49 1 3.0691 1.1999 -2.4441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129271465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:50 Heat of formation + Delta-G solvation = 98.440087 kcal Electronic energy + Delta-G solvation = -31501.258193 eV Core-core repulsion = 27501.773076 eV Total energy + Delta-G solvation = -3999.485117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.33488 -41.65474 -39.79736 -37.76360 -35.89565 -35.03815 -33.87379 -33.45864 -31.93723 -30.73459 -29.52614 -28.53665 -28.18697 -26.63895 -24.39436 -24.02808 -23.65462 -23.00605 -21.90160 -21.57249 -20.99023 -19.27307 -18.74115 -18.52626 -17.57025 -17.05071 -16.80129 -16.49282 -16.27503 -15.97679 -15.75371 -15.62993 -15.55659 -14.93839 -14.84276 -14.44432 -14.40450 -14.07241 -13.96252 -13.53199 -13.30544 -13.24924 -13.12903 -12.83585 -12.79342 -12.73738 -12.68321 -12.51314 -12.34030 -12.32320 -12.13988 -11.96138 -11.92946 -11.82687 -11.71510 -11.33504 -11.18348 -10.78974 -10.32200 -10.18996 -9.23866 -9.02206 -7.82552 -5.29839 0.59264 1.24506 1.43931 1.48379 1.49658 1.55997 1.61224 1.97692 2.45505 2.87738 3.14346 3.30643 3.34409 3.47176 3.62993 3.70054 3.77506 3.87799 3.98312 4.14969 4.20290 4.24042 4.29976 4.36814 4.40920 4.54344 4.57325 4.63436 4.66895 4.74750 4.75531 4.76808 4.89340 4.94171 5.01511 5.11528 5.17888 5.23625 5.26603 5.39567 5.45699 5.46409 5.62024 5.68898 5.80905 5.92084 6.17704 6.32165 6.98942 7.08127 7.49937 7.66748 8.25077 9.17906 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.004700 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.891291 B = 5955.542524 C = 7612.203221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 C 0.074 3.926 4 H 0.117 0.883 5 C 0.488 3.512 6 O -0.564 6.564 7 N -0.706 5.706 8 C 0.121 3.879 9 H 0.102 0.898 10 C 0.163 3.837 11 N -0.613 5.613 12 C -0.237 4.237 13 H 0.092 0.908 14 C -0.058 4.058 15 N -0.944 5.944 16 Si 0.977 3.023 17 H -0.274 1.274 18 H -0.301 1.301 19 H -0.278 1.278 20 C 0.129 3.871 21 C 0.132 3.868 22 H 0.150 0.850 23 N -0.276 5.276 24 C -0.029 4.029 25 C -0.054 4.054 26 N -0.290 5.290 27 N -0.109 5.109 28 N -0.505 5.505 29 C 0.012 3.988 30 C -0.001 4.001 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.401 0.599 37 H 0.000 1.000 38 H 0.072 0.928 39 H 0.245 0.755 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.184 0.816 43 H 0.218 0.782 44 H 0.018 0.982 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 7.397 3.414 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C -0.039 4.039 4 H 0.134 0.866 5 C 0.274 3.726 6 O -0.443 6.443 7 N -0.358 5.358 8 C 0.012 3.988 9 H 0.120 0.880 10 C 0.036 3.964 11 N -0.341 5.341 12 C -0.365 4.365 13 H 0.110 0.890 14 C -0.251 4.251 15 N -0.593 5.593 16 Si 0.805 3.195 17 H -0.200 1.200 18 H -0.228 1.228 19 H -0.204 1.204 20 C 0.003 3.997 21 C 0.029 3.971 22 H 0.167 0.833 23 N -0.070 5.070 24 C -0.180 4.180 25 C -0.210 4.210 26 N -0.156 5.156 27 N -0.087 5.087 28 N -0.227 5.227 29 C -0.136 4.136 30 C -0.149 4.149 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.237 0.763 37 H 0.018 0.982 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.201 0.799 43 H 0.235 0.765 44 H 0.037 0.963 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.310 8.685 2.497 14.477 hybrid contribution 2.411 -2.067 -0.026 3.176 sum -8.899 6.618 2.471 11.362 Atomic orbital electron populations 1.21585 0.92046 1.02067 1.03106 1.21575 0.99089 0.92234 1.02303 1.22059 0.86741 0.98690 0.96407 0.86559 1.22615 0.92818 0.74430 0.82709 1.90631 1.68056 1.50695 1.34920 1.45975 1.06254 1.74229 1.09343 1.22629 0.81121 0.99438 0.95562 0.87994 1.21895 0.84898 0.90234 0.99330 1.44511 1.12266 1.27193 1.50100 1.19358 0.92997 1.02468 1.21715 0.89007 1.25572 0.99539 1.00551 0.99440 1.70020 1.26160 1.30596 1.32511 0.85179 0.78677 0.78195 0.77418 1.20015 1.22771 1.20418 1.21798 0.92398 0.89565 0.95968 1.23072 0.88364 1.02431 0.83229 0.83279 1.47413 1.22149 1.11697 1.25698 1.23903 1.04343 0.92097 0.97685 1.24044 0.96000 0.97826 1.03163 1.75057 1.23203 1.05895 1.11442 1.78249 0.99814 1.20699 1.09985 1.62607 1.56122 1.02903 1.01066 1.22562 0.97684 0.89552 1.03799 1.22755 1.00789 0.98726 0.92582 0.91789 0.91542 0.91917 0.92124 0.91812 0.76347 0.98247 0.91024 0.94497 0.90944 0.92958 0.79891 0.76507 0.96294 0.89786 0.90323 0.90812 0.90462 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.66 71.98 0.70 -1.79 16 2 C -0.11 -2.79 4.91 30.59 0.15 -2.64 16 3 C 0.07 1.91 2.33 44.17 0.10 2.01 16 4 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 5 C 0.49 16.15 6.04 87.66 0.53 16.68 16 6 O -0.56 -22.74 11.89 -3.04 -0.04 -22.77 16 7 N -0.71 -22.76 5.16 -435.95 -2.25 -25.01 16 8 C 0.12 4.29 3.29 46.38 0.15 4.44 16 9 H 0.10 3.93 7.54 -2.39 -0.02 3.91 16 10 C 0.16 7.33 5.16 86.86 0.45 7.78 16 11 N -0.61 -27.15 3.39 -692.00 -2.35 -29.50 16 12 C -0.24 -11.80 10.27 84.03 0.86 -10.94 16 13 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 14 C -0.06 -3.04 5.49 84.86 0.47 -2.57 16 15 N -0.94 -53.66 10.09 21.65 0.22 -53.44 16 16 Si 0.98 43.07 29.55 68.60 2.03 45.10 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 C 0.13 4.27 6.27 86.73 0.54 4.82 16 21 C 0.13 3.87 3.97 46.18 0.18 4.06 16 22 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 23 N -0.28 -8.04 2.38 -321.54 -0.77 -8.81 16 24 C -0.03 -0.84 9.33 83.49 0.78 -0.06 16 25 C -0.05 -1.38 12.05 83.73 1.01 -0.37 16 26 N -0.29 -8.63 12.41 -58.25 -0.72 -9.36 16 27 N -0.11 -3.27 12.28 37.02 0.45 -2.82 16 28 N -0.50 -12.56 4.54 -927.68 -4.21 -16.78 16 29 C 0.01 0.29 9.20 127.69 1.18 1.46 16 30 C 0.00 -0.02 8.72 127.69 1.11 1.09 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.26 7.71 -2.38 -0.02 1.24 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.67 6.13 -2.38 -0.01 1.65 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.40 12.16 6.80 -92.71 -0.63 11.53 16 37 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 38 H 0.07 4.00 5.87 -2.39 -0.01 3.99 16 39 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 42 H 0.18 5.74 7.71 -2.91 -0.02 5.72 16 43 H 0.22 3.98 8.06 -2.91 -0.02 3.95 16 44 H 0.02 0.55 5.96 -2.39 -0.01 0.54 16 45 H 0.08 1.71 8.11 -2.39 -0.02 1.69 16 46 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.07 1.82 5.95 -2.38 -0.01 1.80 16 48 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 49 H 0.04 1.35 5.32 -2.38 -0.01 1.34 16 Total: -1.00 -63.58 380.89 0.91 -62.67 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.33 Total: 36.73 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 8.21 Total: 23.98 kcal Atomic # 7 Polarization: -136.08 SS G_CDS: -9.63 Total: -145.71 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.77 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.58 0.91 -62.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129271465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.109 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds